View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7702_low_7 (Length: 335)
Name: NF7702_low_7
Description: NF7702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7702_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 5366475 - 5366793
Alignment:
| Q |
1 |
tctatggtggaaattcacgggtcaacatcttctccttttttgataaaattgagagctccatggagatgtgaaattcattttcaaaacagaatgtaataac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5366475 |
tctatggtggaaattcacgggtcaacatcttctccttttttgataaaattgagagctccatggagatgtgaaattcattttcaaaacagaatgtaataac |
5366574 |
T |
|
| Q |
101 |
ttcaataagattgtcgtgcttttcgggggtaaatatgttaatcctaatctgtcattttgtgtcttattatttcataaacgaaactcttcatttcttttga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5366575 |
ttcaataagattgtcgtgcttttcgggggtaaatatgttaatcctaatctgtcgttttgtgtcttattatttcataaacgaaactcttcatttcttttga |
5366674 |
T |
|
| Q |
201 |
aaactgaagtgatcaaaattctaaactcacctattgtgtgaatggtttgttcttgacaacatgcaagcctcaattaacacactccacactcagtactttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5366675 |
aaactgaagtgatcaaaattctaaactcacctattgtgtgaatggtttgttcttgacaacatgcaagcctcaattaacacactccacactcagtactttt |
5366774 |
T |
|
| Q |
301 |
ttcaactagggcttaaggt |
319 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
5366775 |
ttcaactagggcttaaggt |
5366793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University