View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7702_low_8 (Length: 306)
Name: NF7702_low_8
Description: NF7702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7702_low_8 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 5366118 - 5366432
Alignment:
| Q |
1 |
tggaaggaatttggtctatgtatattgttgtgtcatttgtaatatatatttctggattgaacatggaacacagcctgaagcttgtgtatgagtgtatgac |
100 |
Q |
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| T |
5366118 |
tggaaggaatttggtctatgtatattgttgtgtcatttgtaatatatgtttctggattgaacatggaacacagcctgaagcttgtgtatgagtgtatgac |
5366217 |
T |
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| Q |
101 |
aacttttgctgtgtttggaagtagggaaagtagtaccataattagtggtcatagtttattactactttagccatatcttattgatacaataaaggcatgg |
200 |
Q |
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| T |
5366218 |
aacttttgctgtgtttggaagtagggaaagtagtaccataattagtggtcatagtttattac-actttagccatatcttattgatacaataaaggcatgg |
5366316 |
T |
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| Q |
201 |
atatactactccgt----------taaaggcatggagtattttccacttaagacttaatcactatacagtcatcatgccactagctttacatagacggtg |
290 |
Q |
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|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5366317 |
atatactactccatgaatatacaataaaggcatggagtattttccacttaagacttaatcactatacagtcatcatgccactagctttacatagacggtg |
5366416 |
T |
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| Q |
291 |
ggatattatttgtggt |
306 |
Q |
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|||||||||||||||| |
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| T |
5366417 |
ggatattatttgtggt |
5366432 |
T |
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