View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7703_high_1 (Length: 851)
Name: NF7703_high_1
Description: NF7703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7703_high_1 |
 | |
|
| [»] scaffold0707 (1 HSPs) |
| | |
|
| [»] scaffold0050 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 639; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 59 - 840
Target Start/End: Complemental strand, 3766531 - 3765750
Alignment:
| Q |
59 |
aaaatcatcatcaagaaagtaaagaagacaatcacaaatataaaagaggatttagccatcacatgtggttgttaaaaaacaaagttgatgtgcttcgctt |
158 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
3766531 |
aaaatcatcatcaagaaagcaaagaagacaatcataaatataaaagaggatttagcgatcacatgtggtggttaaaaaacaaagttgatgtgcttcgctt |
3766432 |
T |
|
| Q |
159 |
tcaaccaaccataggattgcaccttaattttgtcaagcaactgtttgatagaattatgtttattcttgaagattcttgcatttctttctttccataaaac |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3766431 |
tcaaccaaccataggattgcaccttaattttgtcaagcaattgttggatagaattatgtttattcttgaagattattgcatttctttctttccataaaac |
3766332 |
T |
|
| Q |
259 |
ccaaaccgttgaaaacaaaaattaattgggtaatgccttgtttgtatttagagaagtcaccgccgaactgagttaagtggtcttaaatacgataaggagt |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3766331 |
ccaaaccgttgaaaacaaaaattaattgggtaatgccttgtttgtatttagagaagtcaatgtcgaactgagttaagtgatcttaaatacgataaggagt |
3766232 |
T |
|
| Q |
359 |
gaccaaggcgaagcctagctatgaagaaaccacgatccagacttgatgaaaatagtcgcaatgcnnnnnnnnctt-gagccacgtcttctaacttaccac |
457 |
Q |
| |
|
||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||| |
|
|
| T |
3766231 |
gaccatgacgaagcctagctaagaagaaaccacgatccagacttgatgaaaatagtcgcaatgcaaaaaaaaaatcgagccgcgtcttctaacttaccac |
3766132 |
T |
|
| Q |
458 |
accctcccacacaagattgagcagttacggaatcacccctctcttgaacaaattgttgtttgttggaaggtagttgagaagtagacgccacacaaaaaga |
557 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
3766131 |
accctcccacacaagattgagcagttatggaatcacccctctcttgaacaaattgttgtttgttggaaggtagttgagaagtagacgccacacaaaa-ga |
3766033 |
T |
|
| Q |
558 |
ttgactttttgaggaacatcttgatgtcaaaaaacaagattatactgcaatgttgttttgaaccattgattgatgtaaaaacgtttaagctgaactcaca |
657 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||| |
|
|
| T |
3766032 |
ttgacttttagaggaacatcttgatgtcaaaaaacaagattatactgcaatgttgttttgaaccgttgattgttgtaaaaaggtttaagctgaactcacc |
3765933 |
T |
|
| Q |
658 |
atattttctttttgaagaatgcaaattccagaatcacctgccaataacatcatcctgcaaaataatagaatttaacatagcattacactccctcagttgc |
757 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3765932 |
atattttctttttgaagaacgcaaactccagaatcacctgccaataacatcatcctgcaaaataatagaatttaacatagcattacactccctcagttgc |
3765833 |
T |
|
| Q |
758 |
tcctcctcccaagcccattacctcatatgatatgtcacattcaagcatcgcctccctcgccccaccctaaatgattcatctca |
840 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3765832 |
tcctcctcccaagcccattacctcatatgatatttcacattcaagcatcgcctccctcgccccaccctaaatgattcatctca |
3765750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 3766585 - 3766545
Alignment:
| Q |
19 |
aaggagtgcttaagagaagcaaagagaaatgtattgctaca |
59 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
3766585 |
aaggagtgcttaacagaagcaaggagaaatgtattgctaca |
3766545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 1e-74; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 60 - 775
Target Start/End: Complemental strand, 23848027 - 23847313
Alignment:
| Q |
60 |
aaatcatcatcaagaaagtaaagaagacaatcacaaatataaaagaggatttagccatcacatgtggttgttaaaaaacaaagttgatgtgcttcgcttt |
159 |
Q |
| |
|
|||||| || ||| ||||| ||||| ||| ||||||| ||||||||||||||||||| ||||| |||| ||||||| |||| |||||||| |||||| | |
|
|
| T |
23848027 |
aaatcaccaacaataaagtgaagaaaacagtcacaaacataaaagaggatttagccaccacatatggtagttaaaag-caaaattgatgtgtttcgctct |
23847929 |
T |
|
| Q |
160 |
caaccaaccataggattgcaccttaattttgtcaagcaactgtttgatagaattatgtttattcttgaagattcttgcatttctttctttccataaaacc |
259 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||| || || | |||||||| ||||||||||||||| ||| |||||||| ||||||||||||| ||| |
|
|
| T |
23847928 |
caaccatccataggattgcatcttaattttgtcaagaaagtggtggatagaatgatgtttattcttgaaaattattgcatttttttctttccataatacc |
23847829 |
T |
|
| Q |
260 |
caaaccgttgaaaacaaaaattaattgggtaatgccttgtttgtatttagagaagtcaccgccgaactgagttaagtggtcttaaatacgataaggagtg |
359 |
Q |
| |
|
||||| |||||||| ||||||| ||| ||||||| ||||||||||||||| |||||||||| |||||||||| | | |||||| ||| | |||| |
|
|
| T |
23847828 |
caaacttttgaaaac-caaattaaatggataatgccacatttgtatttagagaaaccaccgccgaattgagttaagtaatttgaaatacaatacgaagtg |
23847730 |
T |
|
| Q |
360 |
accaaggcgaagcctagctatgaagaaaccacgatccagacttgatgaaaatagtcgcaatgcnnnnnnnncttgagccacgtcttctaacttaccacac |
459 |
Q |
| |
|
|||| | ||||||||| | | | |||| |||| ||| |||||| ||||||||||||||| ||| || | ||| | || ||||||||| |
|
|
| T |
23847729 |
accatgacgaagcctaaccgagcataaacaacgacccaaacttgacaaaaatagtcgcaatgaagaaaaga--tgaaccgcatctacaaaattaccacac |
23847632 |
T |
|
| Q |
460 |
cctcccacacaagattgagcagt-tacggaatcacccctctcttgaacaaattgttgtttgttggaaggtagttgagaagtagacgccacacaaaaagat |
558 |
Q |
| |
|
|||| ||||||||||||| |||| |||||||||||||||||| | |||||| ||||||||||| |||||| || || || ||||||||||||| |
|
|
| T |
23847631 |
cctctcacacaagattgaacagtagccggaatcacccctctctt--ataaattgccctttgttggaagccggttgagtaggaggcgtcacacaaaaagat |
23847534 |
T |
|
| Q |
559 |
tgactttttgaggaacatcttgatgtcaaaaaacaagattatac---tgcaatgttgttttgaaccattgattgatgt-aaaaacgtt-taagctgaact |
653 |
Q |
| |
|
||||||| |||||||||||||||| ||||| ||||| || || ||||||||||||||||| ||||||| ||| ||||| ||| |||| ||||| |
|
|
| T |
23847533 |
tgactttgagaggaacatcttgatgccaaaatacaag-gtaaacatttgcaatgttgttttgaattgttgattgttgtaaaaaaagttgtaagtcgaact |
23847435 |
T |
|
| Q |
654 |
cacaatattttctttttgaagaatgcaaattccagaatcacctgccaa-taacatcatcctgcaaaataatagaatttaacatagcattacactccctca |
752 |
Q |
| |
|
||||||| || || |||||||| ||||| |||| || ||| || ||| ||| |||||| | ||||||| || |||| | || |||| ||||||||||| |
|
|
| T |
23847434 |
gacaatatatt-ttgttgaagaacgcaaactccacaaccacatgtcaattaatatcatcatacaaaatattataattcagcagagcacaacactccctca |
23847336 |
T |
|
| Q |
753 |
gttgctcctcctcccaagcccat |
775 |
Q |
| |
|
| | |||||||||| || ||||| |
|
|
| T |
23847335 |
gctactcctcctccaaaacccat |
23847313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 706 - 768
Target Start/End: Complemental strand, 45091891 - 45091829
Alignment:
| Q |
706 |
atcatcctgcaaaataatagaatttaa-catagcattacactccctcagttgctcctcctccca |
768 |
Q |
| |
|
|||||||||||||||||| ||||| || ||| ||| ||||||||||||| |||||||||||||| |
|
|
| T |
45091891 |
atcatcctgcaaaataattgaattcaaacat-gcactacactccctcagctgctcctcctccca |
45091829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 713 - 770
Target Start/End: Complemental strand, 18429531 - 18429474
Alignment:
| Q |
713 |
tgcaaaataatagaatttaacatagcattacactccctcagttgctcctcctcccaag |
770 |
Q |
| |
|
|||||||||||| | || |||| |||| |||||| |||||||||||||||||||||| |
|
|
| T |
18429531 |
tgcaaaataataaagttcaacagagcactacactttctcagttgctcctcctcccaag |
18429474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 18430171 - 18430119
Alignment:
| Q |
102 |
aagaggatttagccatcacatgtggttgttaaaaaacaaagttgatgtgcttcg |
155 |
Q |
| |
|
|||||||||||| ||||||||||||| | | |||||||||||||||||| |||| |
|
|
| T |
18430171 |
aagaggatttagtcatcacatgtggtag-tcaaaaacaaagttgatgtgtttcg |
18430119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 4e-62; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 60 - 717
Target Start/End: Original strand, 24448106 - 24448767
Alignment:
| Q |
60 |
aaatcatcatcaagaaagtaaagaagacaatcacaaatataaaagaggatttagccatcacatgtggttgttaaaaaacaaagttgatgtgcttcgcttt |
159 |
Q |
| |
|
|||||| || |||||||||||||| ||| ||||||||||||||||||||||| || || ||||| | ||||||| ||| |||||||| |||||||| |
|
|
| T |
24448106 |
aaatcaccaacaagaaagtaaagagaacattcacaaatataaaagaggatttattcaccatatgtgatagttaaaagtaaaa-ttgatgtgtttcgcttt |
24448204 |
T |
|
| Q |
160 |
caaccaaccataggattgcaccttaattttgtcaagcaactgtttgatagaattatgtttattcttgaagattcttgcatttctttctttccataaaacc |
259 |
Q |
| |
|
|||||| || | ||||||| |||||||||||||| || || | ||||||||||| ||||||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
24448205 |
caaccattcacatgattgcatcttaattttgtcaaataagtgctggatagaattatatttattcttgaagattcttgcatttctttcttttcataataca |
24448304 |
T |
|
| Q |
260 |
caaaccgttgaaaacaaaaattaattgggtaatgccttgtttgtatttagagaagtcaccgccgaactgagttaagtggtcttaaatacgataaggagtg |
359 |
Q |
| |
|
||||||| ||||||| |||| ||| || ||||||| |||||||||||||||||| ||||||| ||| ||||| | ||| ||||||||| | |||| |
|
|
| T |
24448305 |
caaaccgatgaaaac-caaataaataggataatgccacatttgtatttagagaagtcgtcgccgaattgaattaagcgatctgaaatacgatgcgaagtg |
24448403 |
T |
|
| Q |
360 |
accaaggcgaagcctagctatgaagaaaccacgatccagacttgatgaaaatagtcgcaatgcnnnnnnnncttgagccacgtcttctaacttaccacac |
459 |
Q |
| |
|
|||| | ||||||||| | | | |||| |||| || |||||||||||||||||| ||| |||||| | | ||||| ||| ||||| |
|
|
| T |
24448404 |
accatgacgaagcctaaccaaacataaacaacgactcaaacttgatgaaaatagtcgtgatgaagaaaaaa--tgagccgtggcatctaaattaacacac |
24448501 |
T |
|
| Q |
460 |
cctcccacacaagattgagcagt-tacggaatcacccctctcttgaacaaattgttgtttgttggaaggtagttgagaagtagacgccacacaaaa---a |
555 |
Q |
| |
|
|||||||| ||||| ||| ||| || |||||||| ||||||||| ||||||| |||||||||||| |||||||||| ||||||||||||||| | |
|
|
| T |
24448502 |
gctcccacataagatggagaagtagccgaaatcacccgtctcttgaataaattgtcatttgttggaaggcagttgagaaggagacgccacacaaaaaata |
24448601 |
T |
|
| Q |
556 |
gattgactttttgaggaacatcttgatgtcaaaaaacaagattat--actgcaatgttgttttgaaccattgattgatgtaaaaacgtt-taagctgaac |
652 |
Q |
| |
|
|||||||| | || |||||| |||||||||||| |||| |||| || | ||||||||||||| |||||| || ||||| || ||||| |||| |
|
|
| T |
24448602 |
aattgacttctagatgaacattttgatgtcaaaatacaaagttatcatctacgatgttgttttgaattgttgattattgcaaaaaaattgtaagccgaac |
24448701 |
T |
|
| Q |
653 |
tcacaatattt-tctttttgaagaatgcaaattccagaatcacctgccaataacatcatcctgcaa |
717 |
Q |
| |
|
| ||||| ||| | ||||||||||||||||| |||| || |||| ||||||||||||| ||||| |
|
|
| T |
24448702 |
taacaatttttatttttttgaagaatgcaaactccacaactacctatcaataacatcatcttgcaa |
24448767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 156 - 249
Target Start/End: Original strand, 31264167 - 31264262
Alignment:
| Q |
156 |
ctttcaaccaaccataggattgc--accttaattttgtcaagcaactgtttgatagaattatgtttattcttgaagattcttgcatttctttcttt |
249 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||| || | |||||||| | ||||||| ||||||||| ||||||| ||||||| |
|
|
| T |
31264167 |
ctttcaacaaaccataggattgcgcaccttaattttgtcaagcaagtggtggatagaatcacgtttattgttgaagatttttgcattcatttcttt |
31264262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 713 - 762
Target Start/End: Original strand, 24448780 - 24448829
Alignment:
| Q |
713 |
tgcaaaataatagaatttaacatagcattacactccctcagttgctcctc |
762 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||| |||||||| |
|
|
| T |
24448780 |
tgcaaaataatagaattcaacatagcactacactccctcagatgctcctc |
24448829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 159
Target Start/End: Complemental strand, 7419494 - 7419397
Alignment:
| Q |
59 |
aaaatcatcatcaagaaagtaaagaagacaatcacaaatataaaagaggatttagccatcacatgtggttgttaaaaaacaaagttgatgtgcttcgctt |
158 |
Q |
| |
|
||||||| || |||||||| |||||| ||||||||||| |||||||| |||| ||||| ||||| |||| ||| |||| ||||||||||| | ||||||| |
|
|
| T |
7419494 |
aaaatcaccaacaagaaagcaaagaa-acaatcacaaacataaaaga-gattgagccaccacatttggtagtt-aaaagcaaagttgatgagtttcgctt |
7419398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 9e-23; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 147 - 262
Target Start/End: Complemental strand, 134300 - 134185
Alignment:
| Q |
147 |
tgtgcttcgctttcaaccaaccataggattgcaccttaattttgtcaagcaactgtttgatagaattatgtttattcttgaagattcttgcatttctttc |
246 |
Q |
| |
|
||||||||||||||||||||||| | |||| ||||||| ||||||||||| || | |||| ||||| | ||||||||||||||||||||||||||| |
|
|
| T |
134300 |
tgtgcttcgctttcaaccaaccaaaatattgagccttaatgttgtcaagcaagtggtgaatagtattatttgaattcttgaagattcttgcatttctttc |
134201 |
T |
|
| Q |
247 |
tttccataaaacccaa |
262 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
134200 |
tttccataagacccaa |
134185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 147 - 262
Target Start/End: Complemental strand, 38597203 - 38597088
Alignment:
| Q |
147 |
tgtgcttcgctttcaaccaaccataggattgcaccttaattttgtcaagcaactgtttgatagaattatgtttattcttgaagattcttgcatttctttc |
246 |
Q |
| |
|
||||||||||||||||||||||| | ||||| ||||||| ||||||||||| || | |||| |||| | |||||||||||| || ||||||||||| |
|
|
| T |
38597203 |
tgtgcttcgctttcaaccaaccaaaagattgagccttaatgttgtcaagcaagtggtgaatagtattacttgaattcttgaagatcctagcatttctttc |
38597104 |
T |
|
| Q |
247 |
tttccataaaacccaa |
262 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
38597103 |
tttccataagacccaa |
38597088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 262
Target Start/End: Original strand, 47798093 - 47798208
Alignment:
| Q |
147 |
tgtgcttcgctttcaaccaaccataggattgcaccttaattttgtcaagcaactgtttgatagaattatgtttattcttgaagattcttgcatttctttc |
246 |
Q |
| |
|
||||||| | ||||||||||| || ||||| ||||||| ||||||||||| || | |||| ||| ||| |||||||||| || ||||||||||||| |
|
|
| T |
47798093 |
tgtgctttgttttcaaccaactattagattgagccttaatattgtcaagcaattgatgaatagtattttgtgaattcttgaagctttttgcatttctttc |
47798192 |
T |
|
| Q |
247 |
tttccataaaacccaa |
262 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
47798193 |
tttccataaaacccaa |
47798208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 485 - 565
Target Start/End: Complemental strand, 38596863 - 38596783
Alignment:
| Q |
485 |
cggaatcacccctctcttgaacaaattgttgtttgttggaaggtagttgagaagtagacgccacacaaaaagattgacttt |
565 |
Q |
| |
|
||||| |||||||||||| | |||||||| |||||||| | | ||||||||| || |||||||| |||||||||||||| |
|
|
| T |
38596863 |
cggaagcacccctctctttaccaaattgtcatttgttggtaagcggttgagaagaaggcgccacacgaaaagattgacttt |
38596783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 451 - 566
Target Start/End: Complemental strand, 46174301 - 46174186
Alignment:
| Q |
451 |
ttaccacaccctcccacacaagattgagcagttac-ggaatcacccctctcttgaacaaattgttgtttgttggaaggtagttgagaagtagacgccaca |
549 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||| | ||||||||||||| ||||||||||| | |||||||||||| ||||||||| ||||| |||| |
|
|
| T |
46174301 |
ttaccacaccctcc-acacaagattgagaagtagctggaatcacccctcatttgaacaaattatcttttgttggaaggcggttgagaagaagacgtcaca |
46174203 |
T |
|
| Q |
550 |
caaaaagattgactttt |
566 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
46174202 |
caaaaagattgattttt |
46174186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 516 - 595
Target Start/End: Complemental strand, 26522363 - 26522284
Alignment:
| Q |
516 |
tttgttggaaggtagttgagaagtagacgccacacaaaaagattgactttttgaggaacatcttgatgtcaaaaaacaag |
595 |
Q |
| |
|
||||||||||| | ||||||||||||| | ||||| ||| |||| |||||| |||||||||||||||| ||||||||||| |
|
|
| T |
26522363 |
tttgttggaagatggttgagaagtagatgtcacacgaaaggattaacttttagaggaacatcttgatgccaaaaaacaag |
26522284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 692 - 781
Target Start/End: Original strand, 18748133 - 18748222
Alignment:
| Q |
692 |
cacctgccaataacatcatcctgcaaaataatagaatttaacatagcattacactccctcagttgctcctcctcccaagcccattacctc |
781 |
Q |
| |
|
|||||| || |||||||||||||||||||||||| || |||||| | ||| ||||||||| | |||||||||||| |||||| ||||| |
|
|
| T |
18748133 |
cacctgtcattaacatcatcctgcaaaataatagtgttcaacatatcgctactctccctcagctactcctcctcccacgcccataacctc |
18748222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 224 - 258
Target Start/End: Complemental strand, 1852477 - 1852443
Alignment:
| Q |
224 |
ttgaagattcttgcatttctttctttccataaaac |
258 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
|
|
| T |
1852477 |
ttgaagattcttgcatttctttcttttcataaaac |
1852443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 712 - 786
Target Start/End: Original strand, 5366819 - 5366893
Alignment:
| Q |
712 |
ctgcaaaataatagaatttaacatagcattacactccctcagttgctcctcctcccaagcccattacctcatatg |
786 |
Q |
| |
|
||||||||||||||| || |||||| || |||||||||||| ||||||||| ||| |||||| ||||| |||| |
|
|
| T |
5366819 |
ctgcaaaataatagagttcaacatatcactacactccctcaactgctcctccatccacgcccataacctcttatg |
5366893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 102 - 263
Target Start/End: Original strand, 21589363 - 21589524
Alignment:
| Q |
102 |
aagaggatttagccatcacatgtggttgttaaaaaacaaagttgatgtgcttcgctttcaaccaaccataggattgcacctta-attttgtcaagcaact |
200 |
Q |
| |
|
|||||| |||||||| ||||| |||| || |||| | |||||| |||| || | ||||| ||||||||| |||||||| || || ||||||||||| | |
|
|
| T |
21589363 |
aagaggctttagccaccacatatggtagtcaaaag-cgaagttgttgtgttttgttttcagccaaccataagattgcactttttatgttgtcaagcaagt |
21589461 |
T |
|
| Q |
201 |
gtttgatagaattatgtttattcttgaagattcttgcatttctttctttccataaaacccaaa |
263 |
Q |
| |
|
| | |||| ||||| ||||||||||||||||| || |||||||||||||||||| ||||||| |
|
|
| T |
21589462 |
ggtagatattattatttttattcttgaagattcctgaatttctttctttccataagacccaaa |
21589524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 33519105 - 33519049
Alignment:
| Q |
217 |
tttattcttgaagattcttgcatttctttctttccataaaacccaaaccgttgaaaa |
273 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||| || ||||| |
|
|
| T |
33519105 |
tttattcttgaagatttttacatttctttctttccataaaacccaaacggtagaaaa |
33519049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 29298145 - 29298206
Alignment:
| Q |
217 |
tttattcttgaagattcttgcatttctttctttccataaaacccaaaccgttgaaaacaaaa |
278 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||| ||||||| || |||||||||| |
|
|
| T |
29298145 |
tttattcttgacgattcttgaatttctttctttccataagacccaaattgtagaaaacaaaa |
29298206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 488 - 579
Target Start/End: Original strand, 21589725 - 21589816
Alignment:
| Q |
488 |
aatcacccctctcttgaacaaattgttgtttgttggaaggtagttgagaagtagacgccacacaaaaagattgactttttgaggaacatctt |
579 |
Q |
| |
|
||||||||||| |||||| ||||||| || ||||||||| | ||||||| ||| || |||||||||||||||||||| || |||||||| |
|
|
| T |
21589725 |
aatcacccctcgcttgaaaaaattgtctttcgttggaaggcggatgagaaggagatgctacacaaaaagattgacttttgaagaaacatctt |
21589816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 177
Target Start/End: Complemental strand, 33519241 - 33519174
Alignment:
| Q |
109 |
tttagccatcacatgtggttgttaaaaaacaaagttgatgtgcttcgctttcaaccaaccataggattg |
177 |
Q |
| |
|
|||||||| |||||||||| ||||||| ||||||||||||| ||||||||||| || ||||| ||||| |
|
|
| T |
33519241 |
tttagccaccacatgtggtagttaaaag-caaagttgatgtgtttcgctttcaatcagccataagattg |
33519174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 702 - 771
Target Start/End: Original strand, 8591656 - 8591724
Alignment:
| Q |
702 |
taacatcatcctgcaaaataatagaatttaacatagcattacactccctcagttgctcctcctcccaagc |
771 |
Q |
| |
|
|||||||||| ||||||| ||||||||| ||| |||| |||| ||||| ||||| |||||||||||||| |
|
|
| T |
8591656 |
taacatcatcttgcaaaa-aatagaattcaacggagcactacaatcccttagttgatcctcctcccaagc |
8591724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 262
Target Start/End: Complemental strand, 21082443 - 21082328
Alignment:
| Q |
147 |
tgtgcttcgctttcaaccaaccataggattgcaccttaattttgtcaagcaactgtttgatagaattatgtttattcttgaagattcttgcatttctttc |
246 |
Q |
| |
|
|||| |||||||||||||||||| | ||||| |||| | ||||||||||| || | ||| ||| || ||||||||||||||||||||||||||| |
|
|
| T |
21082443 |
tgtgtttcgctttcaaccaaccaaaagattgagccttgttgttgtcaagcaagtggtgaataatattttgagaattcttgaagattcttgcatttctttc |
21082344 |
T |
|
| Q |
247 |
tttccataaaacccaa |
262 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
21082343 |
tttccataaaacccaa |
21082328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 273
Target Start/End: Original strand, 40155344 - 40155461
Alignment:
| Q |
156 |
ctttcaaccaaccataggattgcaccttaattttgtcaagcaactgtttgatagaattatgtttattcttgaagattcttgcatttctttctttccataa |
255 |
Q |
| |
|
||||||||||| || | |||||| | || || ||||| ||||| || | |||| || || ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
40155344 |
ctttcaaccaatcaaaagattgcgcttttatgttgtcgagcaagtggtggatattatcatttttattcttgaagattcttgcatatctttctttccatag |
40155443 |
T |
|
| Q |
256 |
aacccaaaccgttgaaaa |
273 |
Q |
| |
|
|||||||| || ||||| |
|
|
| T |
40155444 |
cacccaaactgtagaaaa |
40155461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 217 - 264
Target Start/End: Original strand, 32639279 - 32639326
Alignment:
| Q |
217 |
tttattcttgaagattcttgcatttctttctttccataaaacccaaac |
264 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
32639279 |
tttatgcttgaagatgcttgcatttctttctttccataagacccaaac |
32639326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 274
Target Start/End: Original strand, 4471962 - 4472019
Alignment:
| Q |
217 |
tttattcttgaagattcttgcatttctttctttccataaaacccaaaccgttgaaaac |
274 |
Q |
| |
|
||||| ||||||| ||| ||||||||||||||||||||| |||||||| || |||||| |
|
|
| T |
4471962 |
tttatgcttgaaggttcatgcatttctttctttccataacacccaaactgtagaaaac |
4472019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 515 - 593
Target Start/End: Complemental strand, 21081464 - 21081386
Alignment:
| Q |
515 |
gtttgttggaaggtagttgagaagtagacgccacacaaaaagattgactttttgaggaacatcttgatgtcaaaaaaca |
593 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||||| || || |||| ||||||| || ||||||||| |
|
|
| T |
21081464 |
gtttgttggaagacggttgagaaggagacgccacacaaaaagattaaccttgggagggacatctttattccaaaaaaca |
21081386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 205 - 274
Target Start/End: Original strand, 12017796 - 12017865
Alignment:
| Q |
205 |
gatagaattatgtttattcttgaagattcttgcatttctttctttccataaaacccaaaccgttgaaaac |
274 |
Q |
| |
|
|||||||| || ||||||||| ||||||||||||||||||||| || |||| || ||||||| ||||||| |
|
|
| T |
12017796 |
gatagaatcatatttattcttcaagattcttgcatttctttctctcaataacactcaaaccgatgaaaac |
12017865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 22583670 - 22583726
Alignment:
| Q |
218 |
ttattcttgaagattcttgcatttctttctttccataaaacccaaaccgttgaaaac |
274 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| | |||||||| ||||||||| |
|
|
| T |
22583670 |
ttattcttgaagattcttgcatttatttctttccacatgacccaaactgttgaaaac |
22583726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 485 - 565
Target Start/End: Complemental strand, 30705030 - 30704951
Alignment:
| Q |
485 |
cggaatcacccctctcttgaacaaattgttgtttgttggaaggtagttgagaagtagacgccacacaaaaagattgacttt |
565 |
Q |
| |
|
||||||||| |||||| | || ||||||| |||||||||||| ||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
30705030 |
cggaatcactcctctcataaataaattgtcatttgttggaaggcggttgagaagaagacg-cacacaaaaagattgacttt |
30704951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 433 - 509
Target Start/End: Original strand, 22583893 - 22583970
Alignment:
| Q |
433 |
tgagccacgtcttctaacttaccacaccctcccacacaagattgagcagt-tacggaatcacccctctcttgaacaaa |
509 |
Q |
| |
|
||||| || ||||||| |||||||||| ||||||||||||||||| ||| |||||||||||||||||| |||||| |
|
|
| T |
22583893 |
tgagctacatcttctagattaccacaccatcccacacaagattgagaagtagccggaatcacccctctctttaacaaa |
22583970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 519 - 586
Target Start/End: Original strand, 30052060 - 30052127
Alignment:
| Q |
519 |
gttggaaggtagttgagaagtagacgccacacaaaaagattgactttttgaggaacatcttgatgtca |
586 |
Q |
| |
|
||||||||| ||||||||| |||||||||| ||||||||||| || |||||||||||| |||||| |
|
|
| T |
30052060 |
gttggaaggcggttgagaagaagacgccacataaaaagattgatttgcagaggaacatctttatgtca |
30052127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 519 - 589
Target Start/End: Complemental strand, 30658769 - 30658699
Alignment:
| Q |
519 |
gttggaaggtagttgagaagtagacgccacacaaaaagattgactttttgaggaacatcttgatgtcaaaa |
589 |
Q |
| |
|
||||||||| ||||| ||| |||||||||| ||||| ||||||||| ||||||||||| ||||||||| |
|
|
| T |
30658769 |
gttggaaggcggttgaaaagaagacgccacataaaaaaattgactttcaaaggaacatctttatgtcaaaa |
30658699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0707 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0707
Description:
Target: scaffold0707; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 7648 - 7593
Alignment:
| Q |
217 |
tttattcttgaagattcttgcatttctttctttccataaaacccaaaccgttgaaaa |
273 |
Q |
| |
|
|||||||||||||||| || |||||||| ||||||||||||||||||| || ||||| |
|
|
| T |
7648 |
tttattcttgaagatttttacatttctt-ctttccataaaacccaaacggtagaaaa |
7593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 62628 - 62668
Alignment:
| Q |
217 |
tttattcttgaagattcttgcatttctttctttccataaaa |
257 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
62628 |
tttattcttgaagattctaacatttctttctttccataaaa |
62668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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