View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7703_high_10 (Length: 446)
Name: NF7703_high_10
Description: NF7703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7703_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 14 - 428
Target Start/End: Original strand, 14085076 - 14085493
Alignment:
| Q |
14 |
aagaatatttgttaacctgttnnnnnnnnntaaagaaaatatacattagtaactaacaaatcaaagccataaaatatgacagtatagcaaactaaaatca |
113 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14085076 |
aagaatatttgttaacctgttaaaaaaaaataaagaaaatatacattagtaactaacaaatcaaagccataaaatatgacagtatagcaaactaaaatca |
14085175 |
T |
|
| Q |
114 |
aagacaactatcaaaacagagtaaacatagactaaatcaaatacaaagttaaaacaa---tgctaaaccaatattaacctaaaagagtaaaagaattacc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||| |
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| T |
14085176 |
aagacaactatcaaaacagagtaaacatagactaaatcaaatacaaagttaaaacaaaaatgctaaaccaatattaccctaaaagagtaaaagaatcacc |
14085275 |
T |
|
| Q |
211 |
ttcatgtttttggacaaacattcatatgtttaagcatgttgttagttcgatggctagaactatttgacgcaaaagaagcaaaacagaagttacaaaatgt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14085276 |
ttcatgtttttggacaaacattcatatgtttaagcatgttgttagtttgatggctagaactatttgacgcaaaagaagcaaaacagaagttacaaaattc |
14085375 |
T |
|
| Q |
311 |
ggcgtatgcgtctcttttcttcgtaaaatgtctccaagccattgaaggatgtctatcatgttttcttttctttagttttagcactaactcagcatgttca |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
14085376 |
ggcgtatgcgtctcttttcttcgtaaaatgtctccaagccattgaaggatgtctatcatgttttcttttctttagttttagcactaactcaacatgttca |
14085475 |
T |
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| Q |
411 |
tgtccttggcctcgcagt |
428 |
Q |
| |
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|||||||||||||||||| |
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| T |
14085476 |
tgtccttggcctcgcagt |
14085493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 49 - 422
Target Start/End: Complemental strand, 12190254 - 12189888
Alignment:
| Q |
49 |
aaaatatacattagtaactaacaaatcaaagccataaaatatgacagtatagcaaactaaaatcaaagacaactatcaaaacagagtaaacatagactaa |
148 |
Q |
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|||||||||||||||| |||| |||||||||||| ||||||| ||| || ||||||||| |||||||||| ||| ||||| ||||| || ||||||||| |
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| T |
12190254 |
aaaatatacattagta-ctaataaatcaaagccacaaaatataacacta--gcaaactaacatcaaagacatctaccaaaatagagttaaaatagactaa |
12190158 |
T |
|
| Q |
149 |
atcaaatacaaagttaaaacaa---tgctaaaccaatattaacctaaaagagtaaaagaattaccttcatgtttttggacaaacattcatatgtttaagc |
245 |
Q |
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|||||||||||||||| || || | ||||| ||| || ||| | | | ||||| || |||||||||||||||||||||| |||| ||||||||| |
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| T |
12190157 |
atcaaatacaaagttacaataaaattactaaatcaacat-aactcagagtaataaaaaaactaccttcatgtttttggacaaatcatcatgtgtttaagc |
12190059 |
T |
|
| Q |
246 |
atgttgttagttcgatggctagaactatttgacgcaaaagaagcaaaacagaagttacaaaatgtggcgtatgcgtctcttttcttcgtaaaatgtctcc |
345 |
Q |
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|||||||||||||||||| | ||| |||||| ||||||||| || || |||||||||| ||| | |||| |||||||| |||||||||||| |
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| T |
12190058 |
atgttgttagttcgatggttggaagcatttgaaacaaaagaagtgaagcaatagttacaaaa---ggca---gtgtcttttttcttcataaaatgtctcc |
12189965 |
T |
|
| Q |
346 |
aagccattgaaggatgtctatcatgttttcttttctttagttttagcactaactcagcatgttcatgtccttggcct |
422 |
Q |
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|| ||||||||||| ||||| || ||||||||||||||||||||||||||| || |||||||||| ||||||||||| |
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| T |
12189964 |
aaaccattgaaggaggtctagcaggttttcttttctttagttttagcactaccttagcatgttcaggtccttggcct |
12189888 |
T |
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