View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7703_high_12 (Length: 392)
Name: NF7703_high_12
Description: NF7703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7703_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 10 - 381
Target Start/End: Original strand, 23176796 - 23177187
Alignment:
| Q |
10 |
acatgaaatagagaatttaattctatgaaatagagaattttatctggaagggatattcattggttacatattcatttaatggctaatttattcaatttct |
109 |
Q |
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| T |
23176796 |
acatgaaatagagaatttaattatatgaaatagagaattttatcaggaagggatattcattggttacatattcatttaatggctaatttattcaatttct |
23176895 |
T |
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| Q |
110 |
ttagttcatacaaaagtcaattaatggttacatattcatttaatgg--------------------ttgtttatttatggtcgaatgttgaccatattcc |
189 |
Q |
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| T |
23176896 |
ttagttcatacaaaagtcaattaatggttacatattcatttaatggttgtttatttatggtcatggttgtttatttatggtcgaatgttgaccatattcc |
23176995 |
T |
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| Q |
190 |
ctgcatacatctgggttactttgtggagtccaatttagctcagaagctctatctggttggaagttttagctgtggcgaccagtgttgattgtgactggca |
289 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
23176996 |
ctgcatacatctgggttactttgtggagtccaattcagctcagaagctctatctggttggaagttttagcggtggcgaccagcgttgattgtgactggca |
23177095 |
T |
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| Q |
290 |
aatgaaccttgtgtattcatgaacttttatacttctcccgaataacataatggctatttctttcataagcatgtgatttagggttatgatgt |
381 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23177096 |
aatgaaccttgtgtattcatgaacctttatacttctcccgaataacataatggctatttctttcataagcatgtgatttagggttatgatgt |
23177187 |
T |
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