View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7703_high_15 (Length: 316)
Name: NF7703_high_15
Description: NF7703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7703_high_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 21 - 166
Target Start/End: Original strand, 20079901 - 20080045
Alignment:
| Q |
21 |
cttgttattgtggatgactattctcgctatacatggactttgtttatttctcataaaaatgacgcttttgttgcctttcggaaacttgctaaaattattc |
120 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||| ||||||||||||| | ||||||||||||||||||| |
|
|
| T |
20079901 |
cttgttattgtggatgactattcactctatacatggactttgtttatttctcataaaaacgacgattttgttgccttt-gaaaacttgctaaaattattc |
20079999 |
T |
|
| Q |
121 |
aaaatgaaaaagatttaaaaattgcatctatccgaagtgatcatgg |
166 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
20080000 |
aaaatgaaaacgatttaaaaattgcatctatccaaagtgatcatgg |
20080045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 280
Target Start/End: Original strand, 22834612 - 22834654
Alignment:
| Q |
238 |
caagaactccacaacaaaatggggtagtggaaaggaaaaatag |
280 |
Q |
| |
|
|||||||||||||||||||||| || || |||||||||||||| |
|
|
| T |
22834612 |
caagaactccacaacaaaatggagttgttgaaaggaaaaatag |
22834654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 29563207 - 29563248
Alignment:
| Q |
239 |
aagaactccacaacaaaatggggtagtggaaaggaaaaatag |
280 |
Q |
| |
|
||||||||||||||||||||| || || |||||||||||||| |
|
|
| T |
29563207 |
aagaactccacaacaaaatggagttgttgaaaggaaaaatag |
29563248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 20578249 - 20578209
Alignment:
| Q |
240 |
agaactccacaacaaaatggggtagtggaaaggaaaaatag |
280 |
Q |
| |
|
|||||||||||||||||||| || || |||||||||||||| |
|
|
| T |
20578249 |
agaactccacaacaaaatggtgttgttgaaaggaaaaatag |
20578209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University