View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7703_high_24 (Length: 216)
Name: NF7703_high_24
Description: NF7703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7703_high_24 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 39034401 - 39034603
Alignment:
| Q |
1 |
atttggttgctagctgagcatagtgtggccaaattaaagccatgaaatctacaataacaaaacaaaaagagccacaaaatctttcgcatgaaaagacgtt |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39034401 |
atttggttgctagctgaacatagtgtggccaaattaaagccatgaaatctacaataacaaaacaaaaagagccacaaaatctttcgcatgaaaagacgtt |
39034500 |
T |
|
| Q |
101 |
tgttaa-tttnnnnnnnntacaaaccaccaattctcaattatatgcgtctgtctttataggaatgccgtatcatgggtgctataccaaatgctagttgaa |
199 |
Q |
| |
|
|||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39034501 |
tgttaattttttaaaaaatagaaaccaccaattctcaattatatgcgtctgtctttataggaatgccgtatcatgggtgctataccaaatgctagttgaa |
39034600 |
T |
|
| Q |
200 |
act |
202 |
Q |
| |
|
||| |
|
|
| T |
39034601 |
act |
39034603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University