View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7703_high_25 (Length: 211)
Name: NF7703_high_25
Description: NF7703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7703_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 3e-96; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 3718915 - 3719096
Alignment:
| Q |
17 |
caagatcttcctcccgaattttttcatgatcgttcttgcgttccttataagctttttcttcaacattgcaaaaactcgtctcttgctcatggtttcttgg |
116 |
Q |
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| T |
3718915 |
caagatcttcctcccgaattttttcatgatcgttcttgcgttccttataagctttttcttcaacattgcaaaaactcgtctcttgctcatggtttcttgg |
3719014 |
T |
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| Q |
117 |
tgaatagtttctcaaaaatggaggcaagtacagggagagccttgcaggaggagcacaacaaaaccaccaaattagtttatat |
198 |
Q |
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| T |
3719015 |
tgaatagtttctcaaaaatggaggcaagtacagggagagccttgcaggaggagctcaacaaaaccaccaaattagtttatat |
3719096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 3770789 - 3770608
Alignment:
| Q |
17 |
caagatcttcctcccgaattttttcatgatcgttcttgcgttccttataagctttttcttcaacattgcaaaaactcgtctcttgctcatggtttcttgg |
116 |
Q |
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| T |
3770789 |
caagatcttcctcccgaattttttcatgatcgatctagtgttcgttacagtttttttcttctacattccaagaacttgtctcttgctcatggtttcttgg |
3770690 |
T |
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| Q |
117 |
tgaatagtttctcaaaaatggaggcaagtacagggagagccttgcaggaggagcacaacaaaaccaccaaattagtttatat |
198 |
Q |
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| T |
3770689 |
tgaatagtttctcaaaaatggaggctagtacagggagagccttgcaggaggagcacaacaaaaccaccaaattagtttatat |
3770608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 3707407 - 3707587
Alignment:
| Q |
18 |
aagatcttcctcccgaattttttcatgatcgttcttgcgttccttataagctttttcttcaacattgcaaaaactcgtctcttgctcatggtttcttggt |
117 |
Q |
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| T |
3707407 |
aagatcttcctcccgaattttttcatgatcgatctagtgttgcttacagtatttttcttctacattccaagaacttgtctcttgctcatggtttcttggc |
3707506 |
T |
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| Q |
118 |
gaatagtttctcaaaaatggaggcaagtacagggagagccttgcaggaggagcacaacaaaaccaccaaattagtttatat |
198 |
Q |
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| T |
3707507 |
gaatagtttctcaaaaatggaggcaagtacagggagagccttgcaggaggagcacaacaaaaccaccaaattagtttatat |
3707587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 69 - 192
Target Start/End: Complemental strand, 3778398 - 3778275
Alignment:
| Q |
69 |
tttttcttcaacattgcaaaaactcgtctcttgctcatggtttcttggtgaatagtttctcaaaaatggaggcaagtacagggagagccttgcaggagga |
168 |
Q |
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| T |
3778398 |
tttttcttctacattccaagaacttttctcttgctcatggtttcttggtgaatagtttctcaaaaatggaggcaagtacagcgagagccttgcagaaaat |
3778299 |
T |
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| Q |
169 |
gcacaacaaaaccaccaaattagt |
192 |
Q |
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||||||||| | |||| ||||||| |
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| T |
3778298 |
gcacaacaatagcacccaattagt |
3778275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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