View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7703_high_9 (Length: 456)

Name: NF7703_high_9
Description: NF7703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7703_high_9
NF7703_high_9
[»] chr6 (5 HSPs)
chr6 (217-438)||(4339220-4339443)
chr6 (13-121)||(4338995-4339103)
chr6 (258-389)||(17930262-17930392)
chr6 (298-384)||(17930212-17930298)
chr6 (328-389)||(5107140-5107201)
[»] chr4 (6 HSPs)
chr4 (253-386)||(47223808-47223943)
chr4 (284-387)||(25366121-25366223)
chr4 (296-360)||(47223908-47223972)
chr4 (346-389)||(26330348-26330391)
chr4 (296-338)||(26330353-26330395)
chr4 (321-389)||(40714861-40714929)
[»] chr7 (4 HSPs)
chr7 (259-386)||(14754018-14754146)
chr7 (217-386)||(43427379-43427546)
chr7 (296-373)||(14753976-14754053)
chr7 (298-386)||(28636451-28636538)
[»] chr3 (6 HSPs)
chr3 (258-389)||(32847512-32847645)
chr3 (311-386)||(26748901-26748976)
chr3 (298-389)||(37341419-37341510)
chr3 (298-388)||(32847609-32847699)
chr3 (259-336)||(52633042-52633123)
chr3 (346-389)||(37341617-37341660)
[»] chr2 (2 HSPs)
chr2 (220-286)||(14699802-14699872)
chr2 (298-376)||(5938812-5938890)
[»] chr8 (2 HSPs)
chr8 (299-338)||(13406151-13406190)
chr8 (321-389)||(8227254-8227322)


Alignment Details
Target: chr6 (Bit Score: 172; Significance: 3e-92; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 217 - 438
Target Start/End: Original strand, 4339220 - 4339443
Alignment:
Q  217 aacataataacatccatacattacaatagcaatattcatag-taatatccatacatttcaattctaacaaaaagagttagtcacatttaacaaaaacaaa 315  Q
    |||||||||||||||||||||||||||| |||||||||||  || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4339220 aacataataacatccatacattacaataacaatattcatacatagtatccatacattttaattctaacaaaaagagttagtcacatttaacaaaaacaaa 4339319  T
Q  316 gttatttgactaaacaaaaacatgaatagtgttcatcacatttaacaaaaactaagttctttgattcaaca-aaacttatctataaagacatgaataagc 414  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||     
T  4339320 gttacttgactaaacaaaaacatgaatagtgttcatcatatttaacaaaaattaagttctttgattcaacacaaacctatctataaagacatgaataagt 4339419  T
Q  415 tcatcatatttaacaaggtctaaa 438  Q
    ||||||||||||||||||||||||    
T  4339420 tcatcatatttaacaaggtctaaa 4339443  T

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Target: chr6; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 4338995 - 4339103
Alignment:
Q  13 aatatgatatttgtgtttgtttcattgaataaatatgatacttgtatcctctttatatccgcgcggatatcaattatgcgggtaatccacaaatttctaa 112  Q
    |||||||||||| |||||||||| ||| |||||||||||| |||| |||| |||||||| ||| ||||||||||||||||||||||||||||| ||||||    
T  4338995 aatatgatatttatgtttgtttcgttggataaatatgatatttgtgtcctttttatatctgcgtggatatcaattatgcgggtaatccacaaacttctaa 4339094  T
Q  113 gtatccatg 121  Q
    |||||||||    
T  4339095 gtatccatg 4339103  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 258 - 389
Target Start/End: Complemental strand, 17930392 - 17930262
Alignment:
Q  258 taatatccatacatttcaattctaacaaaaagagttagtcacatttaacaaaaacaaagttatttgactaaacaaaaacatgaatagtgttcatcacatt 357  Q
    ||||||| |||||||||| |||||  ||||| | ||| | | ||||||||||||||||||| ||| | | |||||||| || ||||  |||||| |||||    
T  17930392 taatatctatacatttcatttctataaaaaaaa-ttaattatatttaacaaaaacaaagttttttaatttaacaaaaatataaataaagttcatgacatt 17930294  T
Q  358 taacaaaaactaagttctttgattcaacaaaa 389  Q
    ||| |||||| |||||||||||||||||||||    
T  17930293 taagaaaaacaaagttctttgattcaacaaaa 17930262  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 384
Target Start/End: Complemental strand, 17930298 - 17930212
Alignment:
Q  298 acatttaacaaaaacaaagttatttgactaaacaaaaacatgaatagtgttcatcacatttaacaaaaactaagttctttgattcaa 384  Q
    |||||||| |||||||||||| ||||| | ||||||||||| ||||  |||||||| ||| ||||||||| ||| |  |||||||||    
T  17930298 acatttaagaaaaacaaagttctttgattcaacaaaaacataaataaagttcatcatattcaacaaaaacaaagcttcttgattcaa 17930212  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 389
Target Start/End: Original strand, 5107140 - 5107201
Alignment:
Q  328 aacaaaaacatgaatagtgttcatcacatttaacaaaaactaagttctttgattcaacaaaa 389  Q
    ||||||||||| |||   |||||||| ||||||||||||| |||||| ||||||||||||||    
T  5107140 aacaaaaacataaatcaagttcatcatatttaacaaaaacaaagttccttgattcaacaaaa 5107201  T

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Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 253 - 386
Target Start/End: Original strand, 47223808 - 47223943
Alignment:
Q  253 catagtaatatccatacatttcaattctaacaaaaagagttagtcacatttaacaaaaacaaa--gttatttgactaaacaaaaacatgaatagtgttca 350  Q
    |||| |||||||||||||||| | ||||||||||||   ||| ||||||||||||||||||||  |||| ||||||||||||||||||||||| ||||||    
T  47223808 catactaatatccatacattttatttctaacaaaaaagtttaatcacatttaacaaaaacaaaaagttacttgactaaacaaaaacatgaataatgttca 47223907  T
Q  351 tcacatttaacaaaaactaagttctttgattcaaca 386  Q
    ||||||||||||||||||||||||||||||| ||||    
T  47223908 tcacatttaacaaaaactaagttctttgatttaaca 47223943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 284 - 387
Target Start/End: Complemental strand, 25366223 - 25366121
Alignment:
Q  284 aaaaagagttagtcacatttaacaaaaacaaagttatttgactaaacaaaaacatgaatagtgttcatcacatttaacaaaaactaagttctttgattca 383  Q
    ||||||||||| ||||||||||| |||||||||||  || | | ||||| ||||| | ||  ||||||||||||||| |||||| |||||| ||||||||    
T  25366223 aaaaagagttaatcacatttaactaaaacaaagtttctt-attcaacaagaacataactaaagttcatcacatttaaaaaaaacaaagttcattgattca 25366125  T
Q  384 acaa 387  Q
    ||||    
T  25366124 acaa 25366121  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 360
Target Start/End: Original strand, 47223908 - 47223972
Alignment:
Q  296 tcacatttaacaaaaacaaagttatttgactaaacaaaaacatgaatagtgttcatcacatttaa 360  Q
    ||||||||||||||||| ||||| ||||| | |||| |||||| ||||| |||||| ||||||||    
T  47223908 tcacatttaacaaaaactaagttctttgatttaacacaaacataaatagagttcattacatttaa 47223972  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 26330348 - 26330391
Alignment:
Q  346 gttcatcacatttaacaaaaactaagttctttgattcaacaaaa 389  Q
    |||||||||||||||||||||  ||||| |||||||||||||||    
T  26330348 gttcatcacatttaacaaaaataaagttatttgattcaacaaaa 26330391  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 338
Target Start/End: Original strand, 26330353 - 26330395
Alignment:
Q  296 tcacatttaacaaaaacaaagttatttgactaaacaaaaacat 338  Q
    |||||||||||||||| |||||||||||| | |||||||||||    
T  26330353 tcacatttaacaaaaataaagttatttgattcaacaaaaacat 26330395  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 389
Target Start/End: Complemental strand, 40714929 - 40714861
Alignment:
Q  321 ttgactaaacaaaaacatgaatagtgttcatcacatttaacaaaaactaagttctttgattcaacaaaa 389  Q
    |||||| ||||||||||| |||| ||||| | || ||||| |||||  ||||||||||||| |||||||    
T  40714929 ttgactcaacaaaaacataaataatgttccttacttttaataaaaataaagttctttgatttaacaaaa 40714861  T

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Target: chr7 (Bit Score: 81; Significance: 6e-38; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 259 - 386
Target Start/End: Complemental strand, 14754146 - 14754018
Alignment:
Q  259 aatatccatacatttcaattctaacaaaaaga-gttagtcacatttaacaaaaacaaagttatttgactaaacaaaaacatgaatagtgttcatcacatt 357  Q
    ||||||||| ||||||| || ||||||||| | |||| ||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||    
T  14754146 aatatccatgcatttcatttttaacaaaaaaaagttaatcacatttaacaaaaccaaagttacttgactaaacaaaaacatgaataatgttcatcacatt 14754047  T
Q  358 taacaaaaactaagttctttgattcaaca 386  Q
    ||||||||||||||||| |||||| ||||    
T  14754046 taacaaaaactaagttccttgatttaaca 14754018  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 217 - 386
Target Start/End: Complemental strand, 43427546 - 43427379
Alignment:
Q  217 aacataataacatccatacattacaatagcaatattcatagtaatatccatacatttcaattctaacaaaaa-gagttagtcacatttaacaaaaacaaa 315  Q
    |||||||||| || |||||||||||||| ||||   |||||||||||  || ||||||| || ||||||||| |||||| ||||||||||||||||||||    
T  43427546 aacataataatattcatacattacaataacaatg--catagtaatatttatgcatttcatttttaacaaaaaagagttaatcacatttaacaaaaacaaa 43427449  T
Q  316 gttatttgactaaacaaaaacatgaatagtgttcatcacatttaacaaaaactaagttctttgattcaaca 386  Q
    |||| || || |||||| |||||||| | |||||||||||||||||||||  ||| |||||||||||||||    
T  43427448 gttactttaccaaacaacaacatgaacaatgttcatcacatttaacaaaatataa-ttctttgattcaaca 43427379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 296 - 373
Target Start/End: Complemental strand, 14754053 - 14753976
Alignment:
Q  296 tcacatttaacaaaaacaaagttatttgactaaacaaaaacatgaatagtgttcatcacatttaacaaaaactaagtt 373  Q
    ||||||||||||||||| |||||  |||| | |||| |||||| ||||  |||||||| ||||||||||||| |||||    
T  14754053 tcacatttaacaaaaactaagttccttgatttaacacaaacataaataaagttcatcatatttaacaaaaacaaagtt 14753976  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 386
Target Start/End: Original strand, 28636451 - 28636538
Alignment:
Q  298 acatttaacaaaaacaaagttatttgactaaacaaaaacatgaatagtgttcatcacatttaacaaaaactaagttctttgattcaaca 386  Q
    |||||||| ||||| |||||||||||| | ||||||||||| | ||  |||||||| ||| |||| |||| ||||| |||| |||||||    
T  28636451 acatttaataaaaataaagttatttgatttaacaaaaacataagtaaagttcatcatattcaacataaacaaagtt-tttgcttcaaca 28636538  T

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Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 258 - 389
Target Start/End: Original strand, 32847512 - 32847645
Alignment:
Q  258 taatatccatacatttcaattctaac--aaaaagagttagtcacatttaacaaaaacaaagttatttgactaaacaaaaacatgaatagtgttcatcaca 355  Q
    |||||||||||| ||||| |||||    ||||| | ||| |||||||||||||||||||||||  || | | ||||||||||| ||||  |||||| |||    
T  32847512 taatatccatacttttcatttctatataaaaaaaaattaatcacatttaacaaaaacaaagtttcttaattcaacaaaaacataaataaagttcataaca 32847611  T
Q  356 tttaacaaaaactaagttctttgattcaacaaaa 389  Q
    |||||||||||| |||||||||||||||||||||    
T  32847612 tttaacaaaaacaaagttctttgattcaacaaaa 32847645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 311 - 386
Target Start/End: Original strand, 26748901 - 26748976
Alignment:
Q  311 acaaagttatttgactaaacaaaaacatgaatagtgttcatcacatttaacaaaaactaagttctttgattcaaca 386  Q
    |||||||||||||| ||| |||||||||||||| |||||||||||||||| ||||||||||||  ||||| |||||    
T  26748901 acaaagttatttgattaagcaaaaacatgaatattgttcatcacatttaataaaaactaagtttcttgatgcaaca 26748976  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 298 - 389
Target Start/End: Complemental strand, 37341510 - 37341419
Alignment:
Q  298 acatttaacaaaaacaaagttatttgactaaacaaaaacatgaatagtgttcatcacatttaacaaaaactaagttctttgattcaacaaaa 389  Q
    |||||||||||||||||||||  |||| | || |||||||| ||||  ||| |||||||||||||||||  |||||| ||||||||||||||    
T  37341510 acatttaacaaaaacaaagttccttgattcaaaaaaaacataaataaagtttatcacatttaacaaaaataaagttccttgattcaacaaaa 37341419  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 388
Target Start/End: Original strand, 32847609 - 32847699
Alignment:
Q  298 acatttaacaaaaacaaagttatttgactaaacaaaaacatgaatagtgttcatcacatttaacaaaaactaagttctttgattcaacaaa 388  Q
    ||||||||||||||||||||| ||||| | ||||||||||| ||||   ||||||| |||  |||||||| |||||  || ||||||||||    
T  32847609 acatttaacaaaaacaaagttctttgattcaacaaaaacataaataaaattcatcatattccacaaaaacaaagtttcttaattcaacaaa 32847699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 336
Target Start/End: Complemental strand, 52633123 - 52633042
Alignment:
Q  259 aatatccatacatttcaattctaacaaaaa----gagttagtcacatttaacaaaaacaaagttatttgactaaacaaaaac 336  Q
    ||||| ||||||||| | ||||||||||||    |||||| |||||||||||||||||||| ||| || | |||||||||||    
T  52633123 aatatacatacattttatttctaacaaaaaagaagagttaatcacatttaacaaaaacaaaattactttattaaacaaaaac 52633042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 37341617 - 37341660
Alignment:
Q  346 gttcatcacatttaacaaaaactaagttctttgattcaacaaaa 389  Q
    |||||| |||||||||||||| |||||| |||||||||||||||    
T  37341617 gttcataacatttaacaaaaattaagttttttgattcaacaaaa 37341660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 220 - 286
Target Start/End: Original strand, 14699802 - 14699872
Alignment:
Q  220 ataataacatccatacattacaatagcaatatt----catagtaatatccatacatttcaattctaacaaa 286  Q
    ||||||| |||||||||| ||||||||||||||    |||||||||||||||| |||||| ||| ||||||    
T  14699802 ataataatatccatacatcacaatagcaatattcatacatagtaatatccatagatttcatttcaaacaaa 14699872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 376
Target Start/End: Original strand, 5938812 - 5938890
Alignment:
Q  298 acatttaacaaaaacaaagttatttgactaaacaaaaacatgaatagtgttcatcacatttaacaaaaactaagttctt 376  Q
    |||||||| ||||| |||||||||||| | |||||||| || | ||  |||||||| ||| ||||||||| ||||||||    
T  5938812 acatttaataaaaataaagttatttgatttaacaaaaatataagtaaagttcatcatattcaacaaaaacaaagttctt 5938890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 13406151 - 13406190
Alignment:
Q  299 catttaacaaaaacaaagttatttgactaaacaaaaacat 338  Q
    |||||||||||||||||||||||||| | |||||||||||    
T  13406151 catttaacaaaaacaaagttatttgattcaacaaaaacat 13406190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 389
Target Start/End: Complemental strand, 8227322 - 8227254
Alignment:
Q  321 ttgactaaacaaaaacatgaatagtgttcatcacatttaacaaaaactaagttctttgattcaacaaaa 389  Q
    |||||||||||||||||| ||||  || | | |||||||| |||||  ||||||||||||| |||||||    
T  8227322 ttgactaaacaaaaacataaataaagtcccttacatttaataaaaataaagttctttgatttaacaaaa 8227254  T

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