View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7703_low_10 (Length: 480)

Name: NF7703_low_10
Description: NF7703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7703_low_10
NF7703_low_10
[»] chr4 (9 HSPs)
chr4 (125-310)||(12088538-12088724)
chr4 (22-127)||(43288003-43288108)
chr4 (381-470)||(43288179-43288268)
chr4 (32-127)||(13010399-13010493)
chr4 (17-69)||(43472249-43472301)
chr4 (33-100)||(11913948-11914015)
chr4 (52-118)||(31767325-31767390)
chr4 (87-129)||(6663739-6663781)
chr4 (83-129)||(31890167-31890213)
[»] chr5 (3 HSPs)
chr5 (125-309)||(36331839-36332024)
chr5 (186-310)||(40351872-40351996)
chr5 (87-129)||(25634833-25634875)
[»] scaffold0002 (2 HSPs)
scaffold0002 (125-310)||(420001-420187)
scaffold0002 (165-236)||(215489-215560)
[»] chr7 (1 HSPs)
chr7 (17-127)||(32352290-32352400)
[»] chr1 (1 HSPs)
chr1 (17-127)||(43254261-43254371)
[»] chr2 (3 HSPs)
chr2 (17-127)||(27107376-27107486)
chr2 (83-129)||(1234941-1234987)
chr2 (79-127)||(8424678-8424726)
[»] chr3 (4 HSPs)
chr3 (125-259)||(20160195-20160321)
chr3 (32-129)||(9372059-9372156)
chr3 (67-118)||(14655064-14655114)
chr3 (71-127)||(14658325-14658380)
[»] chr8 (3 HSPs)
chr8 (32-127)||(22264494-22264588)
chr8 (32-127)||(609804-609898)
chr8 (32-118)||(38678841-38678926)
[»] chr6 (1 HSPs)
chr6 (71-127)||(2936003-2936058)


Alignment Details
Target: chr4 (Bit Score: 175; Significance: 5e-94; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 125 - 310
Target Start/End: Complemental strand, 12088724 - 12088538
Alignment:
Q  125 atactatgtatgaacatagtagaatggaggtcgggcaagtatgcccccatcgtctagtggtttaggacatctctctttcaaggaggcaacggggattcga 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12088724 atactatgtatgaacatagtagaatggaggtcgggcaagtatgcccccatcgtctagtggtttaggacatctctctttcaaggaggcaacggggattcga 12088625  T
Q  225 cttcccct-ggggtagggtactacaaaaggaaattgatcaaggattattaataaagactaaaattgattcttcctgggtcgatgccc 310  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12088624 cttcccctgggggtagggtactacaaaaggaaattgatcaaggattatcaataaagactaaaattgattcttcctgggtcgatgccc 12088538  T

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Target: chr4; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 22 - 127
Target Start/End: Original strand, 43288003 - 43288108
Alignment:
Q  22 ccgttaatgacttgtttgtttatttcaacattaccgacttcgaatcaccgcaatttcaagaacagataagtttacttgatatccctcttgtttattccct 121  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43288003 ccgttaatgacttgtttatttatttcaacattaccgacttcgaatcaccgcaatttcaagaacagataagtttacttgatatccctcttgtttattccct 43288102  T
Q  122 taaata 127  Q
    ||||||    
T  43288103 taaata 43288108  T

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Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 381 - 470
Target Start/End: Original strand, 43288179 - 43288268
Alignment:
Q  381 taaggatttaatcgatgattttttgtgcctaattaggatatctatcaccgtaattcaattttggtgaaaggttaagaaacttaatgatgt 470  Q
    |||||||||| | ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||    
T  43288179 taaggatttatttgatgattttttgtgcctaattaggatatctatccccgtaattcagttttggtgaaaggttaagaaatttaatgatgt 43288268  T

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Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 32 - 127
Target Start/End: Complemental strand, 13010493 - 13010399
Alignment:
Q  32 cttgtttgtttatttcaacattaccgacttcgaatcaccgcaatttcaagaacagataagtttacttgatatccctcttgtttattcccttaaata 127  Q
    |||||||| ||| |||| | ||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||| |||||||| ||| ||||    
T  13010493 cttgtttgcttacttcaccgttaccgacttcaaatcaccgcaatttcaagaacagataagtttactt-atatccttctagtttattctctttaata 13010399  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 43472249 - 43472301
Alignment:
Q  17 catcaccgttaatgacttgtttgtttatttcaacattaccgacttcgaatcac 69  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  43472249 catcaccgttaatgacttatttgtttatttcaacattaccgacttcgaatcac 43472301  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 11914015 - 11913948
Alignment:
Q  33 ttgtttgtttatttcaacattaccgacttcgaatcaccgcaatttcaagaacagataagtttacttga 100  Q
    ||||||||||| |||| | ||| ||||||| ||||||| ||||||||||||||||||||||| |||||    
T  11914015 ttgtttgtttacttcatcgttatcgacttcaaatcaccacaatttcaagaacagataagtttccttga 11913948  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 52 - 118
Target Start/End: Complemental strand, 31767390 - 31767325
Alignment:
Q  52 ttaccgacttcgaatcaccgcaatttcaagaacagataagtttacttgatatccctcttgtttattc 118  Q
    ||||||| ||| ||| |||||||||||||||| ||||||||||||||| |||||||||| |||||||    
T  31767390 ttaccgagttcaaattaccgcaatttcaagaa-agataagtttacttgttatccctcttatttattc 31767325  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 6663781 - 6663739
Alignment:
Q  87 ataagtttacttgatatccctcttgtttattcccttaaatact 129  Q
    |||||||||||||||||| ||||||||||||| ||| ||||||    
T  6663781 ataagtttacttgatatctctcttgtttattctctttaatact 6663739  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 129
Target Start/End: Original strand, 31890167 - 31890213
Alignment:
Q  83 acagataagtttacttgatatccctcttgtttattcccttaaatact 129  Q
    ||||| |||||||||||||||| ||||||||||||| ||| ||||||    
T  31890167 acagaaaagtttacttgatatctctcttgtttattctctttaatact 31890213  T

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Target: chr5 (Bit Score: 170; Significance: 5e-91; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 125 - 309
Target Start/End: Complemental strand, 36332024 - 36331839
Alignment:
Q  125 atactatgtatgaacatagtagaatggaggtcgggcaagtatgcccccatcgtctagtggtttaggacatctctctttcaaggaggcaacggggattcga 224  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36332024 atactatgtatgaacatagtagaattgaggtcgggcaagtatgcccccatcgtctagtggtttaggacatctctctttcaaggaggcaacggggattcga 36331925  T
Q  225 cttcccct-ggggtagggtactacaaaaggaaattgatcaaggattattaataaagactaaaattgattcttcctgggtcgatgcc 309  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  36331924 cttcccctgggggtagggtactacaaaaggaaattgatcaaggattatcaataaagactaaaattgattcttcctgggtcgatgcc 36331839  T

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Target: chr5; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 186 - 310
Target Start/End: Complemental strand, 40351996 - 40351872
Alignment:
Q  186 ttaggacatctctctttcaaggaggcaacggggattcgacttcccctggggtagggtactacaaaaggaaattgatcaaggattattaataaagactaaa 285  Q
    ||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||| |||||||||||||||| | |||||  ||||||||||||    
T  40351996 ttaggacatctctctttcaaggaggcaacggggattcgactcccctgggggtagggtactagaaaaggaaattgatcaggtattatccataaagactaaa 40351897  T
Q  286 attgattcttcctgggtcgatgccc 310  Q
    |||||||||| | |||||| |||||    
T  40351896 attgattctttccgggtcgttgccc 40351872  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 25634875 - 25634833
Alignment:
Q  87 ataagtttacttgatatccctcttgtttattcccttaaatact 129  Q
    |||||||||||||||||| ||||||||||||| ||| ||||||    
T  25634875 ataagtttacttgatatctctcttgtttattctctttaatact 25634833  T

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Target: scaffold0002 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 125 - 310
Target Start/End: Complemental strand, 420187 - 420001
Alignment:
Q  125 atactatgtatgaacatagtagaatggaggtcgggcaagtatgcccccatcgtctagtggtttaggacatctctctttcaaggaggcaacggggattcga 224  Q
    ||||||||||  ||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  420187 atactatgtacaaacatagtagaatggaggtcaagcaagtatgcccccatcgtctagtggtttacgacatctctctttcaaggaggcaacggggattcga 420088  T
Q  225 cttcccct-ggggtagggtactacaaaaggaaattgatcaaggattattaataaagactaaaattgattcttcctgggtcgatgccc 310  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  420087 cttcccctaggggtagggtactacaaaaggaaattgatcaaggattatcaataaagactaaaattgattcttcctgggtcgatgccc 420001  T

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Target: scaffold0002; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 165 - 236
Target Start/End: Original strand, 215489 - 215560
Alignment:
Q  165 atgcccccatcgtctagtggtttaggacatctctctttcaaggaggcaacggggattcgacttcccctgggg 236  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  215489 atgcccctatcgtctagtggttcaggacatctctctttcaaggaggcatcggggattcgacttcccctgggg 215560  T

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Target: chr7 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 32352400 - 32352290
Alignment:
Q  17 catcaccgttaatgacttgtttgtttatttcaacattaccgacttcgaatcaccgcaatttcaagaacagataagtttacttgatatccctcttgtttat 116  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32352400 catcatcgttaatgacttgtttgtttatttcaacattaccgacttcgaatcaccgcaatttcaagaacagataagtttacttgatatccctcttgtttat 32352301  T
Q  117 tcccttaaata 127  Q
    || ||||||||    
T  32352300 tcgcttaaata 32352290  T

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Target: chr1 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 43254261 - 43254371
Alignment:
Q  17 catcaccgttaatgacttgtttgtttatttcaacattaccgacttcgaatcaccgcaatttcaagaacagataagtttacttgatatccctcttgtttat 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  43254261 catcaccgttaatgacttgtttgtttatttcaacattaccgacttcgaatcaccacaatttcaagaacagataagtttatttgatatccctcttgtttat 43254360  T
Q  117 tcccttaaata 127  Q
    |||||||||||    
T  43254361 tcccttaaata 43254371  T

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Target: chr2 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 27107376 - 27107486
Alignment:
Q  17 catcaccgttaatgacttgtttgtttatttcaacattaccgacttcgaatcaccgcaatttcaagaacagataagtttacttgatatccctcttgtttat 116  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  27107376 catcaccattaatgacttgtttgtttatttcaacattaccgacttcgaatcaccgcaatttcaagaacagataagtttacttgatattcctcttgattat 27107475  T
Q  117 tcccttaaata 127  Q
    |||||||||||    
T  27107476 tcccttaaata 27107486  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 129
Target Start/End: Original strand, 1234941 - 1234987
Alignment:
Q  83 acagataagtttacttgatatccctcttgtttattcccttaaatact 129  Q
    |||||||||||||||||||||| ||||||||||||| ||| ||||||    
T  1234941 acagataagtttacttgatatctctcttgtttattctctttaatact 1234987  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 8424678 - 8424726
Alignment:
Q  79 aagaacagataagtttacttgatatccctcttgtttattcccttaaata 127  Q
    |||||| ||| ||||||||||||||||||||||||||||| ||| ||||    
T  8424678 aagaacggatgagtttacttgatatccctcttgtttattctcttcaata 8424726  T

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Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 125 - 259
Target Start/End: Original strand, 20160195 - 20160321
Alignment:
Q  125 atactatgtatgaacatagtagaatggaggtcgggcaagtatgcccccatcgtctagtggtttaggacatctctctttcaaggaggcaacggggattcga 224  Q
    ||||||||||||||||||||||||||||||| ||||             |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20160195 atactatgtatgaacatagtagaatggaggttgggc-------------tcgtctagtggtttaggacatctctctttcaaggaggcaacggggattcga 20160281  T
Q  225 cttcccct--ggggta---gggtactacaaaaggaaattg 259  Q
    ||||||||  ||||||   |||||||||||||||||||||    
T  20160282 cttcccctggggggtaggggggtactacaaaaggaaattg 20160321  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 32 - 129
Target Start/End: Complemental strand, 9372156 - 9372059
Alignment:
Q  32 cttgtttgtttatttcaacattaccgacttcgaatcaccgcaattt-caagaacagataagtttacttgatatccctcttgtttattcccttaaatact 129  Q
    ||||||| |||| |||| | ||||||||||| ||||||| || ||| |||||| ||||||||||||||| |||||||||||||||||| ||| ||||||    
T  9372156 cttgtttatttacttcaccgttaccgacttcaaatcaccacagttttcaagaa-agataagtttacttgttatccctcttgtttattctctttaatact 9372059  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 14655064 - 14655114
Alignment:
Q  67 caccgcaatttcaagaacagataagtttacttgatatccctcttgtttattc 118  Q
    ||||||||||||||||| ||||||||||||||| |||| |||||||| ||||    
T  14655064 caccgcaatttcaagaa-agataagtttacttgttatctctcttgttaattc 14655114  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 127
Target Start/End: Original strand, 14658325 - 14658380
Alignment:
Q  71 gcaatttcaagaacagataagtttacttgatatccctcttgtttattcccttaaata 127  Q
    ||||||||||||| |||| |||||||||| ||||||||||||| |||| ||| ||||    
T  14658325 gcaatttcaagaa-agatgagtttacttgttatccctcttgttaattctctttaata 14658380  T

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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 32 - 127
Target Start/End: Original strand, 22264494 - 22264588
Alignment:
Q  32 cttgtttgtttatttcaacattaccgacttcgaatcaccgcaatttcaagaacagataagtttacttgatatccctcttgtttattcccttaaata 127  Q
    |||||||||||| |||| | ||||| ||||| |||||||||||||||||||||| |||||||||||| |||||||||| |||||||| ||| ||||    
T  22264494 cttgtttgtttacttcaccgttaccaacttcaaatcaccgcaatttcaagaacaaataagtttactt-atatccctctagtttattctctttaata 22264588  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 32 - 127
Target Start/End: Complemental strand, 609898 - 609804
Alignment:
Q  32 cttgtttgtttatttcaacattaccgacttcgaatcaccgcaatttcaagaacagataagtttacttgatatccctcttgtttattcccttaaata 127  Q
    |||||||||||| |||| ||||||| || || |||||||||||||||||| | ||||||||||| ||| |||||||||||||||||| ||| ||||    
T  609898 cttgtttgtttacttcaccattaccaacgtcaaatcaccgcaatttcaagga-agataagtttatttgttatccctcttgtttattctctttaata 609804  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 32 - 118
Target Start/End: Original strand, 38678841 - 38678926
Alignment:
Q  32 cttgtttgtttatttcaacattaccgacttcgaatcaccgcaatttcaagaacagataagtttacttgatatccctcttgtttattc 118  Q
    |||||||| ||| |||| | ||||||||||| |||||||| |||||| | ||||||||||||||||| |||||||||| ||||||||    
T  38678841 cttgtttgcttacttcaccgttaccgacttcaaatcaccgtaatttccaaaacagataagtttactt-atatccctctagtttattc 38678926  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 127
Target Start/End: Complemental strand, 2936058 - 2936003
Alignment:
Q  71 gcaatttcaagaacagataagtttacttgatatccctcttgtttattcccttaaata 127  Q
    ||||||||||||| ||||||| ||| ||| |||||||||||||||||| ||| ||||    
T  2936058 gcaatttcaagaa-agataagattaattgttatccctcttgtttattctctttaata 2936003  T

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