View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7703_low_12 (Length: 464)

Name: NF7703_low_12
Description: NF7703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7703_low_12
NF7703_low_12
[»] chr1 (1 HSPs)
chr1 (13-392)||(42287479-42287860)


Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 13 - 392
Target Start/End: Complemental strand, 42287860 - 42287479
Alignment:
Q  13 aatatacaccttcactaacacccaaacacaaactaacagagaaagggtgaaagctcttgttcacnnnnnnn-gggataagaacataaaagagactgt-gt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||| ||    
T  42287860 aatatacaccttcactaacacccaaacacaaactaacagagaaagggtgaaagctcttgttcacttttttttgggataagaacataaaagagactgttgt 42287761  T
Q  111 tcaaatttaacctttgtgtgtttttacttattgtaaaaaagttcaactnnnnnnnnnnnnnnnnnnncacacacctttttatatgtaaaaggttccttag 210  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||                   |||||||||||||||||||||||||||||||||    
T  42287760 tcaaatttaacctttgtgtgtttttacttattgtaaaaaaattcaacttattatatttatatatatacacacacctttttatatgtaaaaggttccttag 42287661  T
Q  211 taaagaagtttaaagagtacttcaatttatataaattagagctcaatacgaagaggaaagaaagagagcgatatataaggagtctatgaatttgatctat 310  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||     
T  42287660 taaagaagtttaaagagtacttcaatttagataaattagagctcaatacgaagaggaaagaaagagaacgatatataaggagtctatgagtttgatctac 42287561  T
Q  311 ggtttggttggattttacttgctttcttgcaaaacttcagattgttatgacttatgaccattttccttgcaatcgaatgatg 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42287560 ggtttggttggattttacttgctttcttgcaaaacttcagattgttatgacttatgaccattttccttgcaattgaatgatg 42287479  T

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