View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7703_low_15 (Length: 434)

Name: NF7703_low_15
Description: NF7703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7703_low_15
NF7703_low_15
[»] chr2 (5 HSPs)
chr2 (49-417)||(36281702-36282066)
chr2 (50-108)||(34784965-34785023)
chr2 (49-107)||(18889575-18889633)
chr2 (49-97)||(29970543-29970591)
chr2 (16-48)||(36281657-36281689)
[»] chr7 (1 HSPs)
chr7 (52-108)||(15902842-15902898)
[»] chr4 (4 HSPs)
chr4 (50-95)||(13134468-13134513)
chr4 (53-108)||(46083974-46084029)
chr4 (49-81)||(10499280-10499312)
chr4 (49-81)||(33950153-33950185)
[»] chr6 (5 HSPs)
chr6 (49-109)||(26562706-26562766)
chr6 (49-95)||(7086812-7086858)
chr6 (52-86)||(10842552-10842586)
chr6 (52-90)||(26178682-26178720)
chr6 (49-85)||(13360378-13360414)
[»] chr1 (3 HSPs)
chr1 (49-108)||(44482247-44482306)
chr1 (49-95)||(20157346-20157392)
chr1 (49-81)||(14332652-14332684)
[»] chr5 (2 HSPs)
chr5 (49-95)||(41091253-41091299)
chr5 (49-82)||(2577189-2577222)
[»] chr8 (4 HSPs)
chr8 (52-108)||(2572039-2572095)
chr8 (49-81)||(14731729-14731761)
chr8 (49-89)||(34897102-34897142)
chr8 (49-81)||(39954289-39954321)
[»] chr3 (3 HSPs)
chr3 (49-81)||(11313810-11313842)
chr3 (49-81)||(32804550-32804582)
chr3 (49-81)||(49505164-49505196)


Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 49 - 417
Target Start/End: Original strand, 36281702 - 36282066
Alignment:
Q  49 gagaaaatcacataatttagtgtaatcatatgtttcgatgtggtgtctgtatcggacacggatgtgtgttcgacgtcgaaacacgcctaatccgctaaga 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  36281702 gagaaaatcacataatttagtgtaatcatatgtttcgatgtggtgtccgtgtcggacacggacgtgtgttcgacgccgaaacacgcctaatccgctaaga 36281801  T
Q  149 gtttgtgcttcgtaaattttaacaatggcttgagcttaaagaaatttatcatcaaatgatgaatatattcataaagcgaaactgatagtgattcccaact 248  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  36281802 gtttgtgcttcgtaatttttaacaatggcttgagcttaaagaaatttatcatcgaatgatgaatatattcataaagcgaaactgatagtgattcccaact 36281901  T
Q  249 tttcttttatttcctaagattaatctaaaggggaggcaacaaggagaattccaaggcatcatcaattgttgaatataagttctgaatattttcaataacg 348  Q
    ||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36281902 tttcttttatttcctaagattaatctaaaggggagg---caaggagaattccaaggcatcatcaattgttgaatataagttctgaatattttcaataacg 36281998  T
Q  349 gtataaatggttaaaaccttccttaactaaacatattcatggtaatgttgctgattataaggataattt 417  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36281999 gtat-aatggttaaaaccttccttaactaaacatattcatggtaatgttgctgattataaggataattt 36282066  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 34785023 - 34784965
Alignment:
Q  50 agaaaatcacataatttagtgtaatcatatgtttcgatgtggtgtctgtatcggacacg 108  Q
    ||||||||||||||||||||||||| |||||| ||| ||| ||||| ||||||||||||    
T  34785023 agaaaatcacataatttagtgtaattatatgtgtcggtgtcgtgtcggtatcggacacg 34784965  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 18889633 - 18889575
Alignment:
Q  49 gagaaaatcacataatttagtgtaatcatatgtttcgatgtggtgtctgtatcggacac 107  Q
    ||||||||||||||||| ||||||||||||||| ||| |||  ||| ||| ||||||||    
T  18889633 gagaaaatcacataattcagtgtaatcatatgtgtcggtgtcttgtttgtgtcggacac 18889575  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 29970591 - 29970543
Alignment:
Q  49 gagaaaatcacataatttagtgtaatcatatgtttcgatgtggtgtctg 97  Q
    ||||||||| |||| || ||||||||||||||| ||||||| |||||||    
T  29970591 gagaaaatcgcatagttcagtgtaatcatatgtgtcgatgtcgtgtctg 29970543  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 36281657 - 36281689
Alignment:
Q  16 gacatcagacgtcggacaccaacatgtcaatac 48  Q
    |||||||||||||||||||||||||| ||||||    
T  36281657 gacatcagacgtcggacaccaacatgccaatac 36281689  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 15902842 - 15902898
Alignment:
Q  52 aaaatcacataatttagtgtaatcatatgtttcgatgtggtgtctgtatcggacacg 108  Q
    ||||||||||||||||||||||| |||||| ||| ||| ||||| ||||||||||||    
T  15902842 aaaatcacataatttagtgtaattatatgtgtcggtgttgtgtcggtatcggacacg 15902898  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 13134468 - 13134513
Alignment:
Q  50 agaaaatcacataatttagtgtaatcatatgtttcgatgtggtgtc 95  Q
    ||||||||||||||||||||||||| |||||| ||||||| |||||    
T  13134468 agaaaatcacataatttagtgtaattatatgtgtcgatgtcgtgtc 13134513  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 46084029 - 46083974
Alignment:
Q  53 aaatcacataatttagtgtaatcatatgtttcgatgtggtgtctgtatcggacacg 108  Q
    |||||||||||| ||||||||| |||||| ||| ||| ||||| ||||||||||||    
T  46084029 aaatcacataatctagtgtaattatatgtgtcggtgtcgtgtcagtatcggacacg 46083974  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 10499312 - 10499280
Alignment:
Q  49 gagaaaatcacataatttagtgtaatcatatgt 81  Q
    |||||||||||||||||||||||||| ||||||    
T  10499312 gagaaaatcacataatttagtgtaattatatgt 10499280  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 33950153 - 33950185
Alignment:
Q  49 gagaaaatcacataatttagtgtaatcatatgt 81  Q
    ||||||||||||||||||| |||||||||||||    
T  33950153 gagaaaatcacataatttaatgtaatcatatgt 33950185  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 26562706 - 26562766
Alignment:
Q  49 gagaaaatcacataatttagtgtaatcatatgtttcgatgtggtgtctgtatcggacacgg 109  Q
    ||||||||||||||||| |||||||| |||||| ||||||| ||||| || ||| ||||||    
T  26562706 gagaaaatcacataattcagtgtaattatatgtgtcgatgtcgtgtcggtgtcgaacacgg 26562766  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 7086812 - 7086858
Alignment:
Q  49 gagaaaatcacataatttagtgtaatcatatgtttcgatgtggtgtc 95  Q
    |||||||||||||||||||||||||| |||||| ||| ||| |||||    
T  7086812 gagaaaatcacataatttagtgtaattatatgtgtcggtgtagtgtc 7086858  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 86
Target Start/End: Original strand, 10842552 - 10842586
Alignment:
Q  52 aaaatcacataatttagtgtaatcatatgtttcga 86  Q
    |||||||||||||||||||||||||||||| ||||    
T  10842552 aaaatcacataatttagtgtaatcatatgtgtcga 10842586  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 90
Target Start/End: Complemental strand, 26178720 - 26178682
Alignment:
Q  52 aaaatcacataatttagtgtaatcatatgtttcgatgtg 90  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  26178720 aaaatcacataatttagtgtaatcatatgtgtcggtgtg 26178682  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 13360414 - 13360378
Alignment:
Q  49 gagaaaatcacataatttagtgtaatcatatgtttcg 85  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  13360414 gagaaaatcacataattcagtgtaattatatgtttcg 13360378  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 44482247 - 44482306
Alignment:
Q  49 gagaaaatcacataatttagtgtaatcatatgtttcgatgtggtgtctgtatcggacacg 108  Q
    ||||||||||||||||| |||||||| |||||| ||| ||| ||||| || |||||||||    
T  44482247 gagaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacacg 44482306  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 20157392 - 20157346
Alignment:
Q  49 gagaaaatcacataatttagtgtaatcatatgtttcgatgtggtgtc 95  Q
    ||||||||||||||||| ||||||||||||||| ||| ||| |||||    
T  20157392 gagaaaatcacataattcagtgtaatcatatgtgtcggtgtcgtgtc 20157346  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 14332684 - 14332652
Alignment:
Q  49 gagaaaatcacataatttagtgtaatcatatgt 81  Q
    |||||||||||||||||||||||||| ||||||    
T  14332684 gagaaaatcacataatttagtgtaattatatgt 14332652  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 41091299 - 41091253
Alignment:
Q  49 gagaaaatcacataatttagtgtaatcatatgtttcgatgtggtgtc 95  Q
    ||||||||||||||||| |||||||| |||||| ||||||| |||||    
T  41091299 gagaaaatcacataattcagtgtaattatatgtgtcgatgtcgtgtc 41091253  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 2577222 - 2577189
Alignment:
Q  49 gagaaaatcacataatttagtgtaatcatatgtt 82  Q
    |||||||| |||||||||||||||||||||||||    
T  2577222 gagaaaatgacataatttagtgtaatcatatgtt 2577189  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 2572095 - 2572039
Alignment:
Q  52 aaaatcacataatttagtgtaatcatatgtttcgatgtggtgtctgtatcggacacg 108  Q
    ||||||||||||||||||||||| | | || ||| ||| |||||||| |||||||||    
T  2572095 aaaatcacataatttagtgtaattacaagtgtcggtgtcgtgtctgtgtcggacacg 2572039  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 14731729 - 14731761
Alignment:
Q  49 gagaaaatcacataatttagtgtaatcatatgt 81  Q
    |||||||||||||||||||||||||| ||||||    
T  14731729 gagaaaatcacataatttagtgtaattatatgt 14731761  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 34897102 - 34897142
Alignment:
Q  49 gagaaaatcacataatttagtgtaatcatatgtttcgatgt 89  Q
    ||||||||||||||||| |||||||| |||||| |||||||    
T  34897102 gagaaaatcacataattcagtgtaattatatgtgtcgatgt 34897142  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 39954321 - 39954289
Alignment:
Q  49 gagaaaatcacataatttagtgtaatcatatgt 81  Q
    |||||||||||||||||||||||||| ||||||    
T  39954321 gagaaaatcacataatttagtgtaattatatgt 39954289  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 11313842 - 11313810
Alignment:
Q  49 gagaaaatcacataatttagtgtaatcatatgt 81  Q
    |||||||||||||||||||||||||| ||||||    
T  11313842 gagaaaatcacataatttagtgtaattatatgt 11313810  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 32804582 - 32804550
Alignment:
Q  49 gagaaaatcacataatttagtgtaatcatatgt 81  Q
    |||||||||||||||||||||||||| ||||||    
T  32804582 gagaaaatcacataatttagtgtaattatatgt 32804550  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 49505196 - 49505164
Alignment:
Q  49 gagaaaatcacataatttagtgtaatcatatgt 81  Q
    |||||||||||||||||||||||||| ||||||    
T  49505196 gagaaaatcacataatttagtgtaattatatgt 49505164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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