View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7703_low_19 (Length: 402)
Name: NF7703_low_19
Description: NF7703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7703_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 14 - 289
Target Start/End: Original strand, 28525732 - 28526007
Alignment:
| Q |
14 |
tagcagagaggtggagttagaaaagagaaggaaagtaaaatgaaggagagtattttgtcccattaatcttttgtgctagggggcaactgaaatcagcgtt |
113 |
Q |
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| T |
28525732 |
tagcacagaggtggagttagaaaagagaaggaaagtaaaatgaaggagagtattttgtcctattaatcttttgtgctaggggacgactgaaatcagcgtt |
28525831 |
T |
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| Q |
114 |
ctcaaccatttatgaaaattaaacaatttaaatttctaattttggatttgtcgagtcacattgtaagtcatctaatctctatcaacggacttaacttgct |
213 |
Q |
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| T |
28525832 |
ctcgaccatttatgaaaattaaacaatttaaatttctaattttgaatttgtcgagtcacattgtgagtcatctaatctctatcaactgacttaacttgcc |
28525931 |
T |
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| Q |
214 |
taattgtagcgacttcaagagttattgactacaatgaatcttaattgataagtgcgaccgtaccgtgatagaaaaa |
289 |
Q |
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| T |
28525932 |
taattgtagcgacttcaagagttattgatttcaatcaatctcaattgataagtgcggccgtaccgtgatagaaaaa |
28526007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 382
Target Start/End: Original strand, 28526067 - 28526106
Alignment:
| Q |
343 |
gaactttgttgaaaattctatgtgtgaccttataatttat |
382 |
Q |
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| T |
28526067 |
gaactttaatgaaaattctatgtgtgaccttataatttat |
28526106 |
T |
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