View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7703_low_2 (Length: 738)
Name: NF7703_low_2
Description: NF7703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7703_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 678; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 678; E-Value: 0
Query Start/End: Original strand, 18 - 726
Target Start/End: Original strand, 43864310 - 43865019
Alignment:
| Q |
18 |
acatgatggggccataggttttggcgagggaagagagggtgcagtggggttttgagccgagttggtggaggtttccgattatgggaagaccggttggacc |
117 |
Q |
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| T |
43864310 |
acatgatggggccataggttttggcgagggaagagagggtgcagtggggttttgagccgagttggtggaggtttccgattatgggaagaccggttggacc |
43864409 |
T |
|
| Q |
118 |
gggtggtttattcttttggcggtttaggaagaaccggattatgataagggatagggtggtgaataatagtaagatatgatactccatcattaattaatta |
217 |
Q |
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| T |
43864410 |
gggtggtttattcttttggcggtttaggaagaaccggattatgataagggatagggtggtgaataatagtaagatatgatactccatcattgattaatta |
43864509 |
T |
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| Q |
218 |
tctagtatgaaattgtcatgaacttcaatgaaaattatataaggttgtgtgttctggactttttggtttagctacgtttcacctcatggacatgtcaatt |
317 |
Q |
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| T |
43864510 |
tctagtatgaaattgtcatgaacttcaatgaaaattatataaggttgtgtgttctggactttttggtttagctacgtttcacctcatggacatgtcaatt |
43864609 |
T |
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| Q |
318 |
taagtgtttgcctacatgttaagaaatggtataattttcaaatctaattgaaaatgatg-tttttctaaattgtttcaagataaagagtggtataggtgc |
416 |
Q |
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||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43864610 |
taactgattgcctacatgttaagaaatggtataattttcaaatctaattgaaaatgatgttttttctaaattgtttcaagataaagagtggtataggtgc |
43864709 |
T |
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| Q |
417 |
atctttttggtccaccgaataccgactgtgggagtggttaggagaagaagccataaaccagatgacaggttctagaagtaactaaaaaagtgtccaaaaa |
516 |
Q |
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| T |
43864710 |
atctttttggtccaccgaataccgactgtgggagtggttaggagaagaagccatcaaccggatgacaggttctagaagtaactaaaaaagtgtccaaaaa |
43864809 |
T |
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| Q |
517 |
tagtaatttgcaattttgaaaccaaatttctgtccaaaacatggttagtattaaagggtggtgatatgatcatggagttttatttgatgtgttgtggaac |
616 |
Q |
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| T |
43864810 |
tagtaatttgcaattttgaaaccaaatttctgtccaaaacatggttagtattaaagggtggtgatatgatcatggtgttttatttgatgtgttgtggaac |
43864909 |
T |
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| Q |
617 |
acggtgttgcttacttaggtggatcgtggatccttcacggattggaccttggtcagtccaaaacataacaatttagactctttaacaagcatctagccat |
716 |
Q |
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| T |
43864910 |
acggtgttgcttacttaggtggatcgtggatccttcacggattggaccttggtcagtccaaaacataacaatttagactctttaacaagcatctagccat |
43865009 |
T |
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| Q |
717 |
gagtaatatt |
726 |
Q |
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| T |
43865010 |
gagtaatatt |
43865019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 12612839 - 12612802
Alignment:
| Q |
18 |
acatgatggggccataggttttggcgagggaagagagg |
55 |
Q |
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||||||||||| | |||||||||||||||||||||||| |
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| T |
12612839 |
acatgatggggtcgtaggttttggcgagggaagagagg |
12612802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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