View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7703_low_21 (Length: 365)
Name: NF7703_low_21
Description: NF7703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7703_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 37996450 - 37996099
Alignment:
| Q |
1 |
atgccaatctgtgccgggaagccatcagatatgctgaggaaggtgctgtagctatggaaacttatgatgctgcaatgagtggtcttagagaaggtggaaa |
100 |
Q |
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| T |
37996450 |
atgccaatctgtgccgggaagccatcagatatgctgaggaaggtgctgtagctatggaaacttatgatgctgcaatgagtggtcttagagaaggtggaaa |
37996351 |
T |
|
| Q |
101 |
gaaagttgatgtcatgaagagaaatattgccaaagtgtcatcaactaatcatcgactcagcgggaatgattgctccgatcccgacaagaaaacccctact |
200 |
Q |
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| T |
37996350 |
gaaagttgatgtcatgaagagaaatattgccaaagtgtcatcaactaatcatcgactcagcgggaatgattgctccgatcccgacaagaaaacccctact |
37996251 |
T |
|
| Q |
201 |
tcaacatcagatacaagtacagcccctcttttatggccacttaaggatgaaacatcgacgtttaatcttaatgacgtcgatgctcctgttcaaccaatgg |
300 |
Q |
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| T |
37996250 |
tcaacatcagatacaagtacagcccctcttttatggccacttaacgatgaaacatcgacgtttaatcttaatgacgtcgatgctcctgttcaaccaatgg |
37996151 |
T |
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| Q |
301 |
ctgatctgaatttaccacaaacgaccccagtgccacgtaagcaagttgatgt |
352 |
Q |
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| T |
37996150 |
ctgatctgaatttaccacaaacgaccccagtgccacgtaagcaagttgatgt |
37996099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 123
Target Start/End: Original strand, 35698764 - 35698881
Alignment:
| Q |
6 |
aatctgtgccgggaagccatcagatatgctgaggaaggtgctgtagctatggaaacttatgatgctgcaatgagtggtcttagagaaggtggaaagaaag |
105 |
Q |
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| T |
35698764 |
aatctatgtcgggaagccatcagatatgctgaagatggggcggtaactatggaaacttataatgctgctatgactggttttaaagaaggtgaaaagaagg |
35698863 |
T |
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| Q |
106 |
ttgatgtcatgaagagaa |
123 |
Q |
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||| ||| ||||| |||| |
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| T |
35698864 |
ttgctgtgatgaaaagaa |
35698881 |
T |
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