View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7703_low_22 (Length: 353)
Name: NF7703_low_22
Description: NF7703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7703_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 17 - 338
Target Start/End: Complemental strand, 37836375 - 37836055
Alignment:
| Q |
17 |
acttatgtttctaatcgtttatgctttgtcctattgatagtctcttctccacagattttgttaattcacaacagaggaattattgttcaaaacaaaacaa |
116 |
Q |
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| T |
37836375 |
acttatgtttctaatcgtttatgctttgtcctattgatagtctctactccacagattttgttaattcacaatagaggaattattgttcaaaacaaaacaa |
37836276 |
T |
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| Q |
117 |
agatatatagctgtcaccctgctacaaacaagagaaagttgtatcataaatttataatacttctagttatttatcttttagaggaaaataaagttaattt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
37836275 |
agatatatagctgtcaccctgctacaaacaagagaaagttgtatcataaatttataatacttctagttatttaac-tttagaggaaaataaagttaattt |
37836177 |
T |
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| Q |
217 |
ttgttggagtgtgaagtgtgacttagaggtgtcgcataagatgaaaatatgaacattagataatgtataagtgaagaaatctatatacataatgtttaat |
316 |
Q |
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||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37836176 |
ttgttggagtgtgaagtgtgacttagaggggtcacataagatgaaaatatgaacattagataatgtataagtgaagaaatctatatacataatgtttaat |
37836077 |
T |
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| Q |
317 |
aatatggatcaagatgtgatgt |
338 |
Q |
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||||||||| |||||||||||| |
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| T |
37836076 |
aatatggattaagatgtgatgt |
37836055 |
T |
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