View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7703_low_23 (Length: 351)
Name: NF7703_low_23
Description: NF7703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7703_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 16 - 272
Target Start/End: Complemental strand, 24859435 - 24859179
Alignment:
| Q |
16 |
acatcatttgaatcaatgaaataccatcctttgaatcaatgtattaattctgttaattttgtgttagttttgtttcacattgaactgaataccatatatg |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24859435 |
acatcatttgaatcaatgaaataccatcctttgaatcaatgtattaattctgttaattttgtgttagttttgtttcacattgaactgtataccatatatg |
24859336 |
T |
|
| Q |
116 |
gaattgaatctgttggtggtattctagaggtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccact |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24859335 |
gaattgaatctgttggtggtattctagaggtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccact |
24859236 |
T |
|
| Q |
216 |
ggtggatgaacattgaagaaaaactgattttgttgaattcgccacatactgctttct |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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|
| T |
24859235 |
ggtggatgaacattgaagaaaaactgattttgttgaattcaccgcatactgctttct |
24859179 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 124 - 290
Target Start/End: Original strand, 26901741 - 26901907
Alignment:
| Q |
124 |
tctgttggtggtattctagaggtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatg |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26901741 |
tctgttggtggtattctagaggtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatg |
26901840 |
T |
|
| Q |
224 |
aacattgaagaaaaactgattttgttgaattcgccacatactgctttcttcaacttagcattacaaa |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
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|
| T |
26901841 |
aacattgaagaaaaactgattttgttgaattcaccacatactgcttacttcaacttagcattacaaa |
26901907 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 126 - 290
Target Start/End: Original strand, 26897281 - 26897445
Alignment:
| Q |
126 |
tgttggtggtattctagaggtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaa |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26897281 |
tgttggtggtattctagaggtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaa |
26897380 |
T |
|
| Q |
226 |
cattgaagaaaaactgattttgttgaattcgccacatactgctttcttcaacttagcattacaaa |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
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|
| T |
26897381 |
cattgaagaaaaactgattttgttgaattcaccacatactgcttacttcaacttagcattacaaa |
26897445 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 126 - 290
Target Start/End: Original strand, 27205694 - 27205859
Alignment:
| Q |
126 |
tgttggtggtattctagaggtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaa |
225 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27205694 |
tgttgatggtattctagaggtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaa |
27205793 |
T |
|
| Q |
226 |
cattgaagaaaaactgattttgttgaattcgccacatactgctttc-ttcaacttagcattacaaa |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||| |
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|
| T |
27205794 |
cattgaagaaaaactgattttgttgaattcaccacatactgcttacgttcaacttagcattacaaa |
27205859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 124 - 290
Target Start/End: Original strand, 27210157 - 27210324
Alignment:
| Q |
124 |
tctgttggtggtattctagaggtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatg |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27210157 |
tctgttggtggtattctagaggtggtatgttataaattatactattgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatg |
27210256 |
T |
|
| Q |
224 |
aacattgaagaaaaactgattttgttgaattcgccacatactgctttc-ttcaacttagcattacaaa |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| ||| | ||||||||||||||||||| |
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|
| T |
27210257 |
aacattgaagaaaaactgattttgttgaattcaccacatactacttacgttcaacttagcattacaaa |
27210324 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 124 - 290
Target Start/End: Complemental strand, 24047272 - 24047105
Alignment:
| Q |
124 |
tctgttggtggtattctagaggtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatg |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24047272 |
tctgttggtggtattctagaggtggtatgttataaattatactgttgcaggatcttgagcggaaacgtgactttttatactatacttccactggtggatg |
24047173 |
T |
|
| Q |
224 |
aacattgaagaaaaactgattttgttgaattcgccacatactgctttc-ttcaacttagcattacaaa |
290 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||| |
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|
| T |
24047172 |
aacattgaataaaaactgattttgttgaattcaccacatactgcttactttcaacttagcattacaaa |
24047105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 124 - 290
Target Start/End: Complemental strand, 23674996 - 23674829
Alignment:
| Q |
124 |
tctgttggtggtattctagaggtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatg |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||| |
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|
| T |
23674996 |
tctgttggtggtattctagaggtggtatgttataaattatactgttgcaggatcttgagcgaaaacgtgactttttatactatacttccactggtggatg |
23674897 |
T |
|
| Q |
224 |
aacattgaagaaaaactgattttgttgaattcgccacatactgctttc-ttcaacttagcattacaaa |
290 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||| |
|
|
| T |
23674896 |
aacattgaataaaaactgattttgttgaattcaccacatactgcttactttcaacttagcattacaaa |
23674829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 126 - 290
Target Start/End: Complemental strand, 23679499 - 23679334
Alignment:
| Q |
126 |
tgttggtggtattctagaggtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaa |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23679499 |
tgttggtggtattctagaggtggtatgttataaattatactgttgcaggatcttgagcgaaaacgtgactttttatactatacttccactggtggatgaa |
23679400 |
T |
|
| Q |
226 |
cattgaagaaaaactgattttgttgaattcgccacatactgctttc-ttcaacttagcattacaaa |
290 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||| |
|
|
| T |
23679399 |
cattgaataaaaactgattttgttgaattcaccacatactgcttactttcaacttagcattacaaa |
23679334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 126 - 290
Target Start/End: Complemental strand, 24051736 - 24051571
Alignment:
| Q |
126 |
tgttggtggtattctagaggtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatgaa |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24051736 |
tgttggtggtattctagaggtggtatgttataaattatactgttgcaggatcttgagcgaaaacgtgactttttatactatacttccactggtggatgaa |
24051637 |
T |
|
| Q |
226 |
cattgaagaaaaactgattttgttgaattcgccacatactgctttc-ttcaacttagcattacaaa |
290 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||| |
|
|
| T |
24051636 |
cattgaataaaaactgattttgttgaattcaccacatactgcttactttcaacttagcattacaaa |
24051571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 124 - 290
Target Start/End: Complemental strand, 26406882 - 26406715
Alignment:
| Q |
124 |
tctgttggtggtattctagaggtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatg |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26406882 |
tctgttggtggtattctagaggtggtatgttataaattatactgttgcaggatcttgagcggaaacgtgactttttatactatacttccactggtggatg |
26406783 |
T |
|
| Q |
224 |
aacattgaagaaaaactgattttgttgaattcgccacatactgctttc-ttcaacttagcattacaaa |
290 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||| |
|
|
| T |
26406782 |
aacattgaataaaaactgattttgttgaattcaccacatactgcttactttcaacttagcattacaaa |
26406715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 124 - 290
Target Start/End: Complemental strand, 26411348 - 26411181
Alignment:
| Q |
124 |
tctgttggtggtattctagaggtggtatgttataaattatactgttgcaggattttgagtggaaacgtgactttttatactatacttccactggtggatg |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26411348 |
tctgttggtggtattctagaggtggtatgttataaattatactgttgcaggatcttgagcggaaacgtgactttttatactatacttccactggtggatg |
26411249 |
T |
|
| Q |
224 |
aacattgaagaaaaactgattttgttgaattcgccacatactgctttc-ttcaacttagcattacaaa |
290 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||| |
|
|
| T |
26411248 |
aacattgaataaaaactgattttgttgaattcaccacatactgcttactttcaacttagcattacaaa |
26411181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 20482535 - 20482644
Alignment:
| Q |
16 |
acatcatttgaatcaatgaaataccatcctttgaatcaatgtattaattctgttaattttgtgttagttttgtttcacattgaactgaataccatatatg |
115 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
20482535 |
acatcatttgaatcaatgaaatatcatcctttgaatcaatgtattaattctattaattttgtgttagttttgtttcacattgaactgaataccagatatg |
20482634 |
T |
|
| Q |
116 |
gaattgaatc |
125 |
Q |
| |
|
|||||||||| |
|
|
| T |
20482635 |
gaattgaatc |
20482644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 340
Target Start/End: Original strand, 20486853 - 20486898
Alignment:
| Q |
295 |
tgacaaagcaatggcctacaagaataagaagaacaacaaacctgat |
340 |
Q |
| |
|
|||| ||||||||||||| || ||||| |||||||||||||||||| |
|
|
| T |
20486853 |
tgacgaagcaatggcctaaaataataataagaacaacaaacctgat |
20486898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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