View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7703_low_24 (Length: 350)
Name: NF7703_low_24
Description: NF7703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7703_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 26 - 264
Target Start/End: Original strand, 7702193 - 7702440
Alignment:
| Q |
26 |
catggagtacggtgttcgtgtttctaaaacaaatatgtactatacttttctttta---ggggaaatgcagacgaagcatataaaatcaaactacagttaa |
122 |
Q |
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| T |
7702193 |
catggagtacggtgttcgtgtttctaaaacaaatatgtactatacttttcttttattaggggaaatgcagacgaagcatataaaatcaaactacagttaa |
7702292 |
T |
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| Q |
123 |
tatgataataattctgttcaataactaaatgatctcgaagttattttactattgcaaataagccggaagtaaaacaagaagagaaacacgcaatttggat |
222 |
Q |
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| T |
7702293 |
tatgataataattctgttcaataactaaatgatctcgaagttattttactattgcaaataagccggaagtaaaacaagaagagaaacacgcaatttggat |
7702392 |
T |
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| Q |
223 |
aatgaacagat------caacaacataattgacatctagtaacacatg |
264 |
Q |
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| T |
7702393 |
aatgaacagatccagtactacaacataattgacatctagtaacacatg |
7702440 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 39064455 - 39064507
Alignment:
| Q |
179 |
aataagccggaagtaaaacaagaagagaaacacgcaatttggataatgaacag |
231 |
Q |
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| T |
39064455 |
aataagcaggaagtaaaacaagaagacaaacacgcaatttgggtaatggacag |
39064507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 264
Target Start/End: Complemental strand, 38450083 - 38450055
Alignment:
| Q |
236 |
acaacataattgacatctagtaacacatg |
264 |
Q |
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| T |
38450083 |
acaacataattgacatctagtaacacatg |
38450055 |
T |
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