View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7703_low_25 (Length: 347)

Name: NF7703_low_25
Description: NF7703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7703_low_25
NF7703_low_25
[»] chr7 (1 HSPs)
chr7 (84-330)||(44756238-44756486)
[»] chr3 (4 HSPs)
chr3 (20-81)||(52850310-52850371)
chr3 (122-183)||(21222940-21223001)
chr3 (258-294)||(21223014-21223050)
chr3 (84-126)||(21222880-21222922)
[»] chr1 (1 HSPs)
chr1 (197-293)||(39043759-39043855)


Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 84 - 330
Target Start/End: Original strand, 44756238 - 44756486
Alignment:
Q  84 agcagagaaaaacagagcaatatacagaatttgaaaacaaagtgatcattgggtgttaccgtttgaaaaatatggaagaagttgtgttactaatcgatga 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44756238 agcagagaaaaacagagcaatatacagaatttgaaaacaaagtgatcattgggtgttaccgtttgaaaaatatggaagaagttgtgttactaatcgatga 44756337  T
Q  184 tttaaggttactttctggaatttctcgctgtagaatttgccatgaagaagagtttgaaagctccaaagccttagaagcaccttgttcttgttctggaact 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44756338 tttaaggttactttctggaatttctcgctgtagaatttgccatgaagaagagtttgaaagctccaaagccttagaagcaccttgttcttgttctggaact 44756437  T
Q  284 gttaaggtaag--nnnnnnnncacatgatcttttacttaacgtattaat 330  Q
    |||||||||||          ||||||||||||||||||||||||||||    
T  44756438 gttaaggtaagaaaaaaaaaacacatgatcttttacttaacgtattaat 44756486  T

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Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 52850310 - 52850371
Alignment:
Q  20 ctgtgtacttggatgtagagctcagacgtttgtcctttttaaaggacactttttctagtgga 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52850310 ctgtgtacttggatgtagagctcagacgtttgtcctttttaaaggacactttttctagtgga 52850371  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 21222940 - 21223001
Alignment:
Q  122 aaagtgatcattgggtgttaccgtttgaaaaatatggaagaagttgtgttactaatcgatga 183  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||    
T  21222940 aaagtgatcattgagtgttaccgtttgaaaaatatggaagaggttgtgttgctaatcgatga 21223001  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 294
Target Start/End: Original strand, 21223014 - 21223050
Alignment:
Q  258 aagcaccttgttcttgttctggaactgttaaggtaag 294  Q
    |||||||||||||||||||||||| ||||||||||||    
T  21223014 aagcaccttgttcttgttctggaaatgttaaggtaag 21223050  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 126
Target Start/End: Original strand, 21222880 - 21222922
Alignment:
Q  84 agcagagaaaaacagagcaatatacagaatttgaaaacaaagt 126  Q
    ||||||| |||||||||||||||| | ||||||||||||||||    
T  21222880 agcagaggaaaacagagcaatatagataatttgaaaacaaagt 21222922  T

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Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 197 - 293
Target Start/End: Complemental strand, 39043855 - 39043759
Alignment:
Q  197 tctggaatttctcgctgtagaatttgccatgaagaagagtttgaaagctccaaagccttagaagcaccttgttcttgttctggaactgttaaggtaa 293  Q
    |||||| ||||||| |||||||| |||||||||||||| |||||||||| ||||  ||||||||| |||||| | |||||||| || ||||||||||    
T  39043855 tctggattttctcgttgtagaatatgccatgaagaagaatttgaaagcttcaaaagcttagaagctccttgtgcatgttctggtacagttaaggtaa 39043759  T

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