View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7703_low_26 (Length: 338)
Name: NF7703_low_26
Description: NF7703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7703_low_26 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 17991714 - 17992051
Alignment:
| Q |
1 |
tgtccttgattatatttaatgggacgctctgcatgcatgttgttgtattgatttattgtgctgccatttcaatattgcat-agcttaggtagtcctaggt |
99 |
Q |
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| T |
17991714 |
tgtccttgattatatttaattggatgctctgcatgcatgttgttgtattgatttattgtgctgccaattcaatattgctttagtttaggtagtcctaggt |
17991813 |
T |
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| Q |
100 |
tttgagtcgnnnnnnnn-------ggcagtcttaggtttgatttaattagcaccttcctttactagaaatttattaatgttttagtttctagcttcatat |
192 |
Q |
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| T |
17991814 |
tttgagtcgaaaaaaaaaaaaaaaggcagtcttaggtttgatttaattagcaccttcctttactagaaatttattaatgttttagtttctagcttcatat |
17991913 |
T |
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| Q |
193 |
gttgttgtcttgtctaatcaatttaaggttttgaagttcttgtcaattatgcatcaatgatcaatttattgttatttctagtttgtaacccaactctttg |
292 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
17991914 |
gttgttgtcttgtctaatcaatttaaggttttcaagttcttgtcaattatgcatcgatgatcaatttattgttatttctagtttgtaacccaactc-ttg |
17992012 |
T |
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| Q |
293 |
tagtgcaatattctatcatcttatcgtgtaattttgtagctatctt |
338 |
Q |
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||||||| |||||||||||||||||||||||||||||||| |
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| T |
17992013 |
tagtgca-------atcatcttatcgtgtaattttgtagctatctt |
17992051 |
T |
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