View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7703_low_29 (Length: 315)
Name: NF7703_low_29
Description: NF7703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7703_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 307
Target Start/End: Complemental strand, 30996050 - 30995764
Alignment:
| Q |
19 |
tgctgatatccagtaagttcactttcatcttcttcaacaattaaaatataacatttgtattttcaacatatagttatgaataaaatataattagcaagct |
118 |
Q |
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| T |
30996050 |
tgctcatatctagtaagttcactttcatcttcttcaacaattaaaatataacatttgtattttcaacatatagttatgaataaaatataattagcaagct |
30995951 |
T |
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| Q |
119 |
gattggagactctataattaaaaatttgatacttaattgatgtgacgttggattgtcatcgagtgtttttgaatctaacttcaacctcatttgcattctc |
218 |
Q |
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| T |
30995950 |
gattggagactctataattaaaaatttgatacttaattgatgtgacgttggattgtcatcgagtgtttttgaatctaacttcaacctcatttgcattctc |
30995851 |
T |
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| Q |
219 |
attcacaataagttccattttaatcaactatcattaaaagatctaacaataaaaattagagtaatatgaatacgaataaagagaataat |
307 |
Q |
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| T |
30995850 |
attcacaataagttccattttaatcaactatcattaaaagatctaacaataaaaattagagta--atgaatacgaataaagaaaataat |
30995764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 32 - 244
Target Start/End: Complemental strand, 31000277 - 31000065
Alignment:
| Q |
32 |
taagttcactttcatcttcttcaacaattaaaatataacatttgtattttcaacatatagttatgaataaaatataattagcaagctgattggagactct |
131 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||| |||| ||||||||| | |||||||||||||||||||||||| |
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| T |
31000277 |
taagttcactttcatcttcttcaacatttaaaatataagatttgtattttcattatacagttttgaataaaacgtcattagcaagctgattggagactct |
31000178 |
T |
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| Q |
132 |
ataattaaaaatttgatactt-aattgatgtgacgttggattgtcatcgagtgtttttgaatctaacttcaacctcatttgcattctcattcacaataag |
230 |
Q |
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| T |
31000177 |
ataattaaaaatttgatgcttaaattgacgtgatgttggattg-cattgagtgttttttaatctgactacaacctcatttgtattatcattcacgttaaa |
31000079 |
T |
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| Q |
231 |
ttccattttaatca |
244 |
Q |
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| T |
31000078 |
tttcattttaatca |
31000065 |
T |
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