View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7703_low_30 (Length: 305)
Name: NF7703_low_30
Description: NF7703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7703_low_30 |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 181 - 282
Target Start/End: Complemental strand, 3959256 - 3959160
Alignment:
| Q |
181 |
atgttgctagagaggaagaccaggtaaacagtcctagtacagtactgctgcaatgaagagtgtaagcatattaagaactcaatggggagacttagctgat |
280 |
Q |
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| T |
3959256 |
atgttgctagagatgaagaccaggtaaacaatc-----atagtactgctgcaatgaagagtgtaagcatattaagaactcaatggggagacttaggtgat |
3959162 |
T |
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Target: scaffold0060 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 221 - 282
Target Start/End: Original strand, 18716 - 18777
Alignment:
| Q |
221 |
agtactgctgcaatgaagagtgtaagcatattaagaactcaatggggagacttagctgatga |
282 |
Q |
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| T |
18716 |
agtactgcttcaatgaagagtgtaagcatattaagaactcaatggggagacttagctgatga |
18777 |
T |
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Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 181 - 282
Target Start/End: Original strand, 19167941 - 19168037
Alignment:
| Q |
181 |
atgttgctagagaggaagaccaggtaaacagtcctagtacagtactgctgcaatgaagagtgtaagcatattaagaactcaatggggagacttagctgat |
280 |
Q |
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| T |
19167941 |
atgttgctagatatgaagatcaggtaaacaatcctagta-----ctgctgcaatgaagagtgttagcatattaagaactcaatggggagacttcactgat |
19168035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 28782381 - 28782345
Alignment:
| Q |
108 |
gaaagtgacttcataacatgcagcaaacatgtgacac |
144 |
Q |
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| T |
28782381 |
gaaagtgacttcataacatgcagcaaatctgtgacac |
28782345 |
T |
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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 38275350 - 38275410
Alignment:
| Q |
38 |
ttaccaactgtcgagaaaataaatataactttgataacgaaaggggg--aaatgcataaaa |
96 |
Q |
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| T |
38275350 |
ttaccgactgttgagaaaataaatatatctttgataacgaaaggggggaaaatgcataaaa |
38275410 |
T |
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