View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7703_low_31 (Length: 303)
Name: NF7703_low_31
Description: NF7703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7703_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 58 - 210
Target Start/End: Original strand, 28706526 - 28706680
Alignment:
| Q |
58 |
ttcaaccacacttttgagatcaa-tcacaatgcnnnnnnnnnnggtgaattgatgtctcttatccaccaacatagaaaacacaattcaacgaggcctccg |
156 |
Q |
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| T |
28706526 |
ttcaaccacacttttaagatcaaatcacaatgcaaaaaaaaaaggtgaattaatgtctcttatccaccaacatagaaaacacagttcaacatggcctccg |
28706625 |
T |
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| Q |
157 |
tattcaagactcgtttataa-caaggaacacacgaatagggagcctatctaagac |
210 |
Q |
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| T |
28706626 |
tattcaaaactcgtctataagaaaggttcacacgagtagggatcctatctaagac |
28706680 |
T |
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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 232 - 289
Target Start/End: Original strand, 28706753 - 28706812
Alignment:
| Q |
232 |
gattccctcccaccatcatctaact--cacatcttttctagtaacaaataacaagatttt |
289 |
Q |
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| T |
28706753 |
gattccctcccaccatcatctaacaaacacattttttctagtaacaaataacaaaatttt |
28706812 |
T |
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