View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7703_low_34 (Length: 280)
Name: NF7703_low_34
Description: NF7703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7703_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 39521574 - 39521325
Alignment:
| Q |
10 |
acatcatcatttgcgtttgttaatgcaattgaactctttatgctccctcttcatttaatccccgattcagtagcacgtttcaattacatcggttctaatg |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
39521574 |
acatcatcatttgcgtttgttaatgcaattgaactctttatgctccctcttcatttaatccccgattcagtagcacgtttcaattacatcggttctactg |
39521475 |
T |
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| Q |
110 |
gtcggggcttaactacttatagtggcggtttacactcacaacgatcgttggaaaccaaactccgtcttaacgtcggtgaccaaactgtcgatagaggaac |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39521474 |
gtcggggcttaactacttatagtggcggtttacactcacaacgatcgttggaaaccaaactccgtcttaacgtcggtgaccaaactgtcgatagaggaac |
39521375 |
T |
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| Q |
210 |
cgatacattatcgagagaatggttaccagatgacagttatgtaactaatc |
259 |
Q |
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| T |
39521374 |
cgatacattatcgagagaatggttagcagatgacagttatgtaactaatc |
39521325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 10 - 262
Target Start/End: Complemental strand, 39576219 - 39575964
Alignment:
| Q |
10 |
acatcatcatttgcgtttgttaatgcaattgaactctttatgctccctcttcatttaatccccgattcagtagcacgtttcaattacatcggttctaatg |
109 |
Q |
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| T |
39576219 |
acatcatcatttgcgtttgttaatgcaatagaactctttatgcttccggttcatttaatccctgattcaatgccacatttctcttacaaagaatctggtg |
39576120 |
T |
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| Q |
110 |
gtcgggg---cttaactacttatagtggcggtttacactcacaacgatcgttggaaaccaaactccgtcttaacgtcggtgaccaaactgtcgatagagg |
206 |
Q |
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| T |
39576119 |
ttcgaggaggcttatctacttatattggcggtttacactcacaacgagccttggaaacaaaacatcgttttaacgtcggtgggggaaccgttgatagagg |
39576020 |
T |
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| Q |
207 |
aaccgatacattatcgagagaatggttaccagatgacagttatgtaactaatctac |
262 |
Q |
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| T |
39576019 |
aactgatactttatcgagagaatggttaccagatgacagatatgtaactaatctac |
39575964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 39544367 - 39544121
Alignment:
| Q |
10 |
acatcatcatttgcgtttgttaatgcaattgaactctttatgctccctcttcatttaatccccgattcagtagcacgtttcaattacatcggttctaatg |
109 |
Q |
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||||| |||||||||||| |||||||| ||||||||||||| ||||||||||||||||| ||| ||||| |||| |||||||||||||| | |||| |
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| T |
39544367 |
acatcttcatttgcgttttttaatgcatttgaactctttattctccctcttcatttaatacccaattcaatagctcgtttcaattacattgattctgcca |
39544268 |
T |
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| Q |
110 |
gtcggggcttaactacttatagtggcggtttacactcacaacgatcgttggaaaccaaactccgtcttaacgtcggtgaccaaactgtcgatagaggaac |
209 |
Q |
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| T |
39544267 |
ttcgaaacttaactacttatagtaatgatttcctctctca---atcgttggaaaccatccttggtcttaatgttggtagcggaactgtcgatagaaaaac |
39544171 |
T |
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| Q |
210 |
cgatacattatcgagagaatggttaccagatgacagttatgtaactaatc |
259 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
39544170 |
cgatactttatcgagagaatggttaccagatgacagttatataactaatc |
39544121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 259
Target Start/End: Complemental strand, 39511326 - 39511079
Alignment:
| Q |
12 |
atcatcatttgcgtttgttaatgcaattgaactctttatgctccctcttcatttaatccccgattcagtagcacgtttcaattacatcggttctaatggt |
111 |
Q |
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||||||| | || |||||||| ||||| ||||||||| ||||||| ||||||||||||| |||||||| ||||| | ||||| | |||| | | |
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| T |
39511326 |
atcatcactcgcatttgttaacgcaatagaactctttgtgctccccgttcatttaatccctgattcagtgttgcgttttacttacaaagaatctagttct |
39511227 |
T |
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| Q |
112 |
cggggcttaactacttatagtggcggtttacactcacaacgatcgttggaaaccaaactccgtcttaacgtcggtgaccaaactgtcgatagaggaaccg |
211 |
Q |
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| |||||| ||| |||||||||||||||| ||||||||||| | |||||||| |||| ||||||||||| || | | | |||| ||||| | ||| |
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| T |
39511226 |
ccaggcttatctaattatagtggcggtttaaactcacaacgagctttggaaacgaaacatcgtcttaacgtaggcggtgataatgtcactagagaagccg |
39511127 |
T |
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| Q |
212 |
atacattatcgagagaatggttaccagatgacagttatgtaactaatc |
259 |
Q |
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|||||||||| ||||||||||||| ||||||||| || ||||||||| |
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| T |
39511126 |
atacattatcaagagaatggttacgagatgacagatacataactaatc |
39511079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 255
Target Start/End: Complemental strand, 39525067 - 39524829
Alignment:
| Q |
14 |
catcatttgcgtttgttaatgcaattgaactctttatgctccctcttcatttaatccccgattcagtagcacgtttcaattacatcggttctaatggtcg |
113 |
Q |
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|||||||||| |||| ||||||||| |||||||||||||||||| |||||||||||||||| ||| | || | |||| |||||| | |||| ||| | |
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| T |
39525067 |
catcatttgcctttgctaatgcaatagaactctttatgctccctgttcatttaatccccgactcaatcgcgcttttccattacaaagagtctactggcag |
39524968 |
T |
|
| Q |
114 |
gggcttaactacttatagtggcggtttacactcacaacgatcgttggaaaccaaactccgtcttaacgtcggtgaccaaactgtcgatagaggaaccgat |
213 |
Q |
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|||| ||||||||||| | ||| | ||| | |||||||||||||||| ||||||||||| || |||| | || ||| |||||| ||| ||| |
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| T |
39524967 |
aaacttatctacttatagtaatgatttcctctctc---gatcgttggaaaccaacctccgtcttaatgttggtggcggaattgttaatagagaaactgat |
39524871 |
T |
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| Q |
214 |
acattatcgagagaatggttaccagatgacagttatgtaact |
255 |
Q |
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||| |||| ||||||||||||||||||||||| ||| ||||| |
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| T |
39524870 |
acactatcaagagaatggttaccagatgacagatatataact |
39524829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 141
Target Start/End: Complemental strand, 39580756 - 39580628
Alignment:
| Q |
13 |
tcatcatttgcgtttgttaatgcaattgaactctttatgctccctcttcatttaatccccgattcagtagcacgtttcaattacatcggttctaatggtc |
112 |
Q |
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| T |
39580756 |
tcatcatttgcgtttgttaatgcaatggaactctttatactccccactcatttcatccccgaatcagtcacacatttcaattacattaattctactggtc |
39580657 |
T |
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| Q |
113 |
ggggcttaactacttatagtggcggttta |
141 |
Q |
| |
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|||||| || |||| | |||||||||| |
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| T |
39580656 |
aaggcttatcttcttacactggcggttta |
39580628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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