View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7703_low_36 (Length: 264)
Name: NF7703_low_36
Description: NF7703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7703_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 20 - 249
Target Start/End: Original strand, 11104328 - 11104557
Alignment:
| Q |
20 |
actagtaatatttgcttctcaaatatccatcttaaaatcatctaatatatattgatctatgaacagggaggaggtccctcatggccaattccattgggaa |
119 |
Q |
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| T |
11104328 |
actagtaatttttgcttctcaaatatccatcttaaaatcatctaatatatattgatctatgaacagggaggaggtccctcatggccaattccattgggaa |
11104427 |
T |
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| Q |
120 |
gaagggatagcttaactgccaacataactcttgcaaatcaaaaccttcctggacccttctccacattggatcaacttaaagcttcatttcttgttcaagg |
219 |
Q |
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| T |
11104428 |
gaagggatagcttaaccgccaacataactcttgcaaatcaaaaccttcccggacccttctccacattggatcaacttaaagcttcatttcttgttcaagg |
11104527 |
T |
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| Q |
220 |
tctcaacactacagatttagttacactctc |
249 |
Q |
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| T |
11104528 |
tctcaacactacagatttagttacactctc |
11104557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 66 - 249
Target Start/End: Original strand, 11097351 - 11097534
Alignment:
| Q |
66 |
atatattgatctatgaacagggaggaggtccctcatggccaattccattgggaagaagggatagcttaactgccaacataactcttgcaaatcaaaacct |
165 |
Q |
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|||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| || ||| | | ||||||||||||||||| |
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| T |
11097351 |
atatattggtttatgaacagggaggaggtccctcatggcaaattccattgggaagaagggatagtttaacagcaaaccaagcccttgcaaatcaaaacct |
11097450 |
T |
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| Q |
166 |
tcctggacccttctccacattggatcaacttaaagcttcatttcttgttcaaggtctcaacactacagatttagttacactctc |
249 |
Q |
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| T |
11097451 |
tccagcaccctttttcacattggatcaacttaaagctgcatttcttgttcaaggtctcaacactacagatttagttacactctc |
11097534 |
T |
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