View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7703_low_37 (Length: 264)
Name: NF7703_low_37
Description: NF7703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7703_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 37091379 - 37091133
Alignment:
| Q |
1 |
ctccagcgatgaattaggagttttgtgaatttgagtcatactcaacaatagtaattacagttttcttgcttatttggcaggcaatacatacagattccgg |
100 |
Q |
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| T |
37091379 |
ctccagcgatgaattaggagttttgtgaatttgagtcatactcaacaatagtaattacagttttcttgcttatttggcaggcaatacatacagattccgg |
37091280 |
T |
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| Q |
101 |
atatcaaatgttggactcacaacttccatcaatttcagaattcaaggtcataagatgaaactagttgaagtggaaggaatccacacactacaaaacactt |
200 |
Q |
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| T |
37091279 |
atatcaaatgttggactcacaacttccatcaatttcagaattcaaggtcataagatgaaactagttgaagtggaaggaatccacacactacaaaacactt |
37091180 |
T |
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| Q |
201 |
atgattcccttgatattcatttggggcagagttactctgtattggtt |
247 |
Q |
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| T |
37091179 |
atgattcccttgatattcatttggggcagagttactctgtattggtt |
37091133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 77 - 247
Target Start/End: Original strand, 17347140 - 17347310
Alignment:
| Q |
77 |
gcaggcaatacatacagattccggatatcaaatgttggactcacaacttccatcaatttcagaattcaaggtcataagatgaaactagttgaagtggaag |
176 |
Q |
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| T |
17347140 |
gcaggcaagacttacagattccggatatcaaatgtggggattaccacatcaatcaatttcagaatccaagggcataagataaagcttgttgaggtggaag |
17347239 |
T |
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| Q |
177 |
gaatccacacactacaaaacacttatgattcccttgatattcatttggggcagagttactctgtattggtt |
247 |
Q |
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| T |
17347240 |
gaagtcacactctgcaaaacacttatgactcacttgacattcatttggggcagacgtattctgtattggtt |
17347310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 93 - 247
Target Start/End: Complemental strand, 17136660 - 17136506
Alignment:
| Q |
93 |
gattccggatatcaaatgttggactcacaacttccatcaatttcagaattcaaggtcataagatgaaactagttgaagtggaaggaatccacacactaca |
192 |
Q |
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| T |
17136660 |
gattccggatatcaaatgtggggattaccacatccatcaatttcagaatccaagggcataagatgaagcttgttgaggtggaaggaagtcacactgtgca |
17136561 |
T |
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| Q |
193 |
aaacacttatgattcccttgatattcatttggggcagagttactctgtattggtt |
247 |
Q |
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| T |
17136560 |
aaacatttacgactcacttgacattcatttggggcagacgtattctgtattggtt |
17136506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 147
Target Start/End: Original strand, 55295900 - 55295970
Alignment:
| Q |
77 |
gcaggcaatacatacagattccggatatcaaatgttggactcacaacttccatcaatttcagaattcaagg |
147 |
Q |
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| T |
55295900 |
gcaggtaagacatatagattcagaatatcaaatgttgggctcgcaacatccatcaacttcagaatccaagg |
55295970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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