View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7703_low_39 (Length: 246)
Name: NF7703_low_39
Description: NF7703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7703_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 47058735 - 47058502
Alignment:
| Q |
1 |
ttaactatatacaagtaaaacgtaaaagaattcctattatgtgatctaaaaatagaagcagtctccaattagtcttccttagttatatacgggtacacct |
100 |
Q |
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| T |
47058735 |
ttaactatatacaagtaaatcgtaaaagaattcctattatgtgatctaaaaatagaagcagtctccaattagtcttccttagttatagatgggtacacct |
47058636 |
T |
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| Q |
101 |
ttcatgtgaattgatttgaatttgatattgtaggtgtttttaaaatcaagtgtgggaaaacatttcattagtggctgccaaaagcaataacttaaacccc |
200 |
Q |
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| T |
47058635 |
ttcatgtgaattgatttgaatttgatattgtaggtgtttttaaaataaagtgtgggaaaacatttcattagtggctgccaaaagcaataacttaaacccc |
47058536 |
T |
|
| Q |
201 |
atgttactggggatttcgatctaattattctgat |
234 |
Q |
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||| |||||||||||||||||||||||||||||| |
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| T |
47058535 |
atgatactggggatttcgatctaattattctgat |
47058502 |
T |
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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 199
Target Start/End: Complemental strand, 26921640 - 26921556
Alignment:
| Q |
110 |
attgatttgaatttgatattgtaggtgtttttaaaatcaagtgtgggaaaacatttcattagtggctgccaaaagcaataacttaaaccc |
199 |
Q |
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|||||||||||||||||| || |||||||||||||||||||| |||||||||||||||| |||| |||||| | ||||| |||||| |
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| T |
26921640 |
attgatttgaatttgata-----ggagtttttaaaatcaagtgtggaaaaacatttcattagtagctgacaaaagtattaactcaaaccc |
26921556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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