View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7703_low_40 (Length: 246)

Name: NF7703_low_40
Description: NF7703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7703_low_40
NF7703_low_40
[»] chr2 (33 HSPs)
chr2 (1-238)||(2062919-2063154)
chr2 (1-120)||(15126342-15126461)
chr2 (1-124)||(22885061-22885184)
chr2 (1-139)||(16960012-16960150)
chr2 (1-142)||(33788542-33788683)
chr2 (1-133)||(27740005-27740137)
chr2 (2-130)||(4471954-4472081)
chr2 (1-129)||(25504831-25504960)
chr2 (1-97)||(16952337-16952434)
chr2 (1-97)||(17023002-17023099)
chr2 (1-97)||(17060308-17060405)
chr2 (1-129)||(27880054-27880180)
chr2 (1-125)||(3745364-3745489)
chr2 (1-117)||(10173512-10173629)
chr2 (39-124)||(43816384-43816469)
chr2 (2-114)||(18681096-18681208)
chr2 (1-72)||(17079199-17079271)
chr2 (1-111)||(34230231-34230341)
chr2 (1-114)||(31902352-31902465)
chr2 (1-101)||(14405228-14405330)
chr2 (1-111)||(7695993-7696102)
chr2 (1-141)||(29487160-29487301)
chr2 (1-56)||(1269513-1269568)
chr2 (1-55)||(7874321-7874375)
chr2 (37-114)||(12793669-12793745)
chr2 (1-54)||(39338863-39338916)
chr2 (26-114)||(20572130-20572218)
chr2 (1-111)||(13337304-13337414)
chr2 (1-111)||(37770583-37770692)
chr2 (1-97)||(915408-915503)
chr2 (52-110)||(29044778-29044836)
chr2 (151-238)||(4472117-4472206)
chr2 (21-111)||(41086738-41086826)
[»] chr5 (24 HSPs)
chr5 (1-140)||(27713099-27713238)
chr5 (1-130)||(22675246-22675375)
chr5 (1-125)||(39184112-39184238)
chr5 (1-129)||(8730947-8731076)
chr5 (1-111)||(13954175-13954285)
chr5 (1-97)||(8297498-8297594)
chr5 (1-129)||(24072190-24072317)
chr5 (1-114)||(31721707-31721820)
chr5 (7-111)||(21402778-21402882)
chr5 (1-111)||(14302371-14302481)
chr5 (1-111)||(7195181-7195290)
chr5 (65-143)||(23426427-23426505)
chr5 (1-82)||(34378128-34378210)
chr5 (1-54)||(698391-698444)
chr5 (1-110)||(7391979-7392082)
chr5 (1-117)||(17854001-17854118)
chr5 (1-50)||(39024452-39024501)
chr5 (1-56)||(25992037-25992092)
chr5 (1-56)||(26045960-26046015)
chr5 (1-53)||(18593273-18593325)
chr5 (151-236)||(39183985-39184071)
chr5 (154-222)||(17853870-17853937)
chr5 (154-206)||(31742377-31742428)
chr5 (1-72)||(33258862-33258933)
[»] chr1 (25 HSPs)
chr1 (1-222)||(50589023-50589258)
chr1 (1-238)||(19598666-19598921)
chr1 (1-142)||(42374193-42374335)
chr1 (1-114)||(4651810-4651922)
chr1 (1-143)||(17033616-17033760)
chr1 (1-111)||(27102221-27102331)
chr1 (1-125)||(38544664-38544789)
chr1 (1-56)||(10785455-10785510)
chr1 (1-97)||(24658959-24659057)
chr1 (1-54)||(5389419-5389472)
chr1 (8-107)||(34774907-34775007)
chr1 (1-111)||(6583157-6583267)
chr1 (1-97)||(27031793-27031891)
chr1 (1-55)||(46814464-46814518)
chr1 (1-54)||(31585758-31585811)
chr1 (1-54)||(41920482-41920535)
chr1 (1-54)||(46692817-46692870)
chr1 (34-113)||(2988058-2988138)
chr1 (1-96)||(32864517-32864612)
chr1 (39-115)||(28395026-28395103)
chr1 (1-54)||(30685902-30685955)
chr1 (1-57)||(16147585-16147641)
chr1 (1-55)||(7857683-7857737)
chr1 (1-34)||(9313307-9313340)
chr1 (155-238)||(38548856-38548941)
[»] chr4 (32 HSPs)
chr4 (1-130)||(28966897-28967026)
chr4 (1-148)||(12296205-12296352)
chr4 (1-130)||(38929857-38929986)
chr4 (16-139)||(21983734-21983857)
chr4 (1-111)||(35800519-35800629)
chr4 (1-96)||(16501761-16501858)
chr4 (1-124)||(46698712-46698836)
chr4 (1-111)||(53823362-53823472)
chr4 (1-118)||(41117901-41118018)
chr4 (1-56)||(25753202-25753257)
chr4 (6-72)||(19673135-19673201)
chr4 (1-56)||(22811156-22811211)
chr4 (26-115)||(43374031-43374120)
chr4 (1-111)||(38637174-38637283)
chr4 (1-111)||(19815161-19815275)
chr4 (151-224)||(38930021-38930094)
chr4 (1-115)||(43077008-43077126)
chr4 (6-100)||(24740054-24740149)
chr4 (1-107)||(39420958-39421064)
chr4 (151-238)||(12296370-12296460)
chr4 (151-205)||(21983654-21983708)
chr4 (1-55)||(35341335-35341389)
chr4 (150-222)||(46487465-46487536)
chr4 (1-56)||(48098363-48098418)
chr4 (1-56)||(49747557-49747612)
chr4 (1-111)||(2061679-2061789)
chr4 (1-55)||(2825813-2825867)
chr4 (1-54)||(4305755-4305808)
chr4 (1-64)||(6599932-6599996)
chr4 (1-72)||(8255057-8255129)
chr4 (1-72)||(8268475-8268547)
chr4 (1-97)||(21387159-21387255)
[»] chr7 (36 HSPs)
chr7 (1-130)||(48058576-48058705)
chr7 (1-125)||(47456949-47457073)
chr7 (1-132)||(13311869-13312000)
chr7 (1-128)||(9428030-9428156)
chr7 (1-128)||(11379052-11379178)
chr7 (1-115)||(12480916-12481031)
chr7 (1-114)||(46133214-46133329)
chr7 (1-111)||(3478382-3478492)
chr7 (1-114)||(38485586-38485698)
chr7 (1-120)||(22568043-22568163)
chr7 (1-111)||(6716678-6716787)
chr7 (1-97)||(6584939-6585037)
chr7 (1-111)||(42533194-42533303)
chr7 (1-111)||(24324738-24324849)
chr7 (1-111)||(8745183-8745293)
chr7 (1-97)||(34389992-34390090)
chr7 (1-54)||(3419654-3419707)
chr7 (1-55)||(35745824-35745878)
chr7 (1-97)||(36449113-36449210)
chr7 (1-54)||(47325883-47325936)
chr7 (151-237)||(47456819-47456909)
chr7 (1-57)||(23983225-23983281)
chr7 (1-101)||(3867146-3867248)
chr7 (1-97)||(41089701-41089799)
chr7 (1-101)||(1320824-1320925)
chr7 (44-129)||(9107234-9107319)
chr7 (1-54)||(10244212-10244265)
chr7 (1-54)||(37795019-37795072)
chr7 (1-54)||(38306291-38306344)
chr7 (89-137)||(12546322-12546370)
chr7 (1-40)||(33435139-33435178)
chr7 (151-197)||(9107355-9107401)
chr7 (1-54)||(5860286-5860339)
chr7 (1-54)||(9349779-9349832)
chr7 (1-56)||(16828931-16828987)
chr7 (1-56)||(16954683-16954739)
[»] chr3 (22 HSPs)
chr3 (1-138)||(47945736-47945873)
chr3 (1-121)||(5556600-5556721)
chr3 (1-115)||(1652823-1652937)
chr3 (5-114)||(27398992-27399102)
chr3 (1-111)||(823375-823486)
chr3 (1-109)||(33143891-33144000)
chr3 (1-115)||(30935326-30935441)
chr3 (1-238)||(25594328-25594571)
chr3 (11-115)||(38488835-38488940)
chr3 (1-56)||(37123412-37123467)
chr3 (1-97)||(43012405-43012503)
chr3 (1-55)||(19176532-19176586)
chr3 (1-55)||(39021273-39021327)
chr3 (1-54)||(17550987-17551040)
chr3 (1-90)||(9584013-9584104)
chr3 (1-97)||(23328303-23328401)
chr3 (1-56)||(14193970-14194027)
chr3 (1-54)||(20611813-20611866)
chr3 (10-123)||(46358315-46358428)
chr3 (1-111)||(14879465-14879576)
chr3 (1-81)||(40023541-40023623)
chr3 (1-55)||(45398826-45398880)
[»] scaffold0499 (1 HSPs)
scaffold0499 (1-140)||(6588-6727)
[»] chr8 (22 HSPs)
chr8 (2-156)||(15906717-15906872)
chr8 (1-148)||(17720610-17720756)
chr8 (1-115)||(30236064-30236179)
chr8 (1-111)||(17656943-17657053)
chr8 (1-114)||(35062487-35062600)
chr8 (1-72)||(32945683-32945754)
chr8 (1-107)||(41791209-41791315)
chr8 (1-111)||(10248494-10248604)
chr8 (1-114)||(10552298-10552410)
chr8 (1-54)||(9519529-9519582)
chr8 (1-99)||(15821330-15821430)
chr8 (1-54)||(24995393-24995446)
chr8 (1-90)||(32066256-32066346)
chr8 (16-57)||(12198064-12198105)
chr8 (16-57)||(12442492-12442533)
chr8 (1-54)||(16457459-16457512)
chr8 (1-50)||(31207364-31207413)
chr8 (1-54)||(37986856-37986909)
chr8 (1-54)||(41893399-41893451)
chr8 (151-219)||(15906882-15906949)
chr8 (1-55)||(36630867-36630921)
chr8 (1-54)||(34389003-34389056)
[»] chr6 (15 HSPs)
chr6 (4-140)||(13098483-13098619)
chr6 (1-115)||(9224071-9224186)
chr6 (1-115)||(26534652-26534770)
chr6 (1-111)||(26215960-26216070)
chr6 (1-136)||(33968531-33968664)
chr6 (1-115)||(21266143-21266257)
chr6 (1-111)||(32935280-32935390)
chr6 (1-111)||(20701744-20701854)
chr6 (1-111)||(13423496-13423606)
chr6 (1-96)||(21265016-21265111)
chr6 (26-111)||(15120538-15120623)
chr6 (1-54)||(3117523-3117576)
chr6 (44-131)||(15944093-15944178)
chr6 (1-57)||(12794145-12794201)
chr6 (81-117)||(16180837-16180873)
[»] scaffold0200 (1 HSPs)
scaffold0200 (1-111)||(19413-19523)
[»] scaffold1613 (1 HSPs)
scaffold1613 (1-125)||(943-1068)
[»] scaffold0119 (1 HSPs)
scaffold0119 (1-56)||(42134-42189)
[»] scaffold0050 (1 HSPs)
scaffold0050 (1-97)||(36737-36835)
[»] scaffold0063 (1 HSPs)
scaffold0063 (1-72)||(58157-58228)


Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 2062919 - 2063154
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2062919 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggttgtggaaact 2063018  T
Q  101 gattgatctttagaatagtggctcaacttaggcgatgcggacagagtgatttattttgggttgagtagtggcaatgtatggttatggatatcgttttttc 200  Q
    ||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2063019 gattgatcttta--atagtggctcagcttaggcgatgcggacagagtgatttattttgggttgagtagtggcaatgtatggttatggatatcgttttttc 2063116  T
Q  201 agtggtcgtttcttgaaggagtttttaggtggtgatgt 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2063117 agtggtcgtttcttgaaggagtttttaggtggtgatgt 2063154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 15126461 - 15126342
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    |||||||||||||||||||||| | ||||||||||| |||||||||||||||||| ||||||||||||||||  || |||||||||||||||||||||||    
T  15126461 ttttgattcgagatcgggagtcggttctttggctcatgtttggttttgggcttttatggtgttctttcggtggtccggaggttgtgaggtggtggaaact 15126362  T
Q  101 gattgatctttagaatagtg 120  Q
     |||||||||||||||||||    
T  15126361 tattgatctttagaatagtg 15126342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 22885184 - 22885061
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||| | ||||||||||||||||||| ||||||||||| ||||||||||||  |    
T  22885184 ttttgattcgagatcgggagtcagttctttggttcaagtttggttttgggttgttttggtgttctttcggtggaccagaggttgagaggtggtggaagtt 22885085  T
Q  101 gattgatctttagaatagtggctc 124  Q
    ||||||||| ||||||||||||||    
T  22885084 gattgatctatagaatagtggctc 22885061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 16960012 - 16960150
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||  |    
T  16960012 ttttgattcgagatcgagagtcagttctttggctcaagtttggttttgggcttatttggtgttctttcggtggaccagaggttgtgagctggtggaagtt 16960111  T
Q  101 gattgatctttagaatagtggctcaacttaggcgatgcg 139  Q
    ||||| ||||| ||||| ||||||| | |||| ||||||    
T  16960112 gattgttctttggaataatggctcagcgtaggtgatgcg 16960150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 33788683 - 33788542
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    |||||||||||||| ||||||||| ||||||| ||| |||||| |||||| | ||||||||||||||||||| ||||||||||| |||||||||||| ||    
T  33788683 ttttgattcgagattgggagtcagttctttggttcaggtttggctttgggttgttttggtgttctttcggtgaaccagaggttgagaggtggtggaagct 33788584  T
Q  101 gattgatctttagaatagtggctcaacttaggcgatgcggac 142  Q
    ||||||||| |||| |||||||||| |||||| |||| ||||    
T  33788583 gattgatctatagattagtggctcagcttaggtgatgaggac 33788542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 27740005 - 27740137
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    ||||||||| |||||| |||||||   || || ||||||||||| ||||| | ||||||||||||||||||| ||||||||||| |||||||||||||||    
T  27740005 ttttgattcaagatcgagagtcagtgtttcggttcaagtttggtcttgggttgttttggtgttctttcggtggaccagaggttgagaggtggtggaaact 27740104  T
Q  101 gattgatctttagaatagtggctcaacttaggc 133  Q
    ||||||||| | |||||||||||||||||||||    
T  27740105 gattgatctatggaatagtggctcaacttaggc 27740137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 130
Target Start/End: Original strand, 4471954 - 4472081
Alignment:
Q  2 tttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaactg 101  Q
    ||||||||||||||||||||||| ||||||  ||||||||| ||||||||||| |||||||||||| |||| ||| |||||    ||||||| ||| |||    
T  4471954 tttgattcgagatcgggagtcagttctttgattcaagtttgtttttgggctttattggtgttcttttggtggaccggaggtcaa-aggtggtagaagctg 4472052  T
Q  102 attgatctttagaatagtggctcaactta 130  Q
    |||||||||||||||||||||||||||||    
T  4472053 attgatctttagaatagtggctcaactta 4472081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 25504960 - 25504831
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagttt-ggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaac 99  Q
    |||| ||||||||||||||||||| ||||||| ||| |||| |||||||||||||||||||||||||||| || |||  |||||  |||||||||||| |    
T  25504960 ttttaattcgagatcgggagtcagttctttggttcaggttttggttttgggcttttttggtgttctttcgatggaccgaaggttcagaggtggtggaagc 25504861  T
Q  100 tgattgatctttagaatagtggctcaactt 129  Q
    | |||||| |||||||||| ||||||||||    
T  25504860 taattgatatttagaatagcggctcaactt 25504831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 16952434 - 16952337
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggc-ttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaa 97  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||| | ||||||||||||||||||||| | | ||||||| ||||||||||||    
T  16952434 ttttgattcgagatcgggagccagttctttggctcaagtttggttttggacattttttggtgttctttcggtggatcggaggttgagaggtggtggaa 16952337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 17023099 - 17023002
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggc-ttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaa 97  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||| | ||||||||||||||||||||| | | ||||||| ||||||||||||    
T  17023099 ttttgattcgagatcgggagccagttctttggctcaagtttggttttggacattttttggtgttctttcggtggatcggaggttgagaggtggtggaa 17023002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 17060405 - 17060308
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggc-ttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaa 97  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||| | ||||||||||||||||||||| | | ||||||| ||||||||||||    
T  17060405 ttttgattcgagatcgggagccagttctttggctcaagtttggttttggacattttttggtgttctttcggtggatcggaggttgagaggtggtggaa 17060308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 27880180 - 27880054
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    ||||||||||||||||| |||||| | ||||| |||||||||| |||||||| ||||| ||||||||||||| ||| |||| || ||||||||| || ||    
T  27880180 ttttgattcgagatcggaagtcagttatttggttcaagtttgg-tttgggctgttttgttgttctttcggtg-accggaggatgagaggtggtgaaagct 27880083  T
Q  101 gattgatctttagaatagtggctcaactt 129  Q
    |||||||||| |||||| |||||||||||    
T  27880082 gattgatcttgagaataatggctcaactt 27880054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 3745364 - 3745489
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggtttt-gggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaac 99  Q
    |||| |||||||||||| |||||| ||||||| | |||||| ||||| ||||||||||| ||||||||||||| | ||||||||   | ||||||||  |    
T  3745364 ttttaattcgagatcggaagtcagttctttggtttaagttttgtttttgggcttttttgttgttctttcggtggatcagaggtttaaaagtggtggaggc 3745463  T
Q  100 tgattgatctttagaatagtggctca 125  Q
    ||||||||||||||||||||||||||    
T  3745464 tgattgatctttagaatagtggctca 3745489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 10173629 - 10173512
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttt-ttggtgttctttcggtgtaccagaggttgtgaggtggtggaaac 99  Q
    ||||||||||||||||| ||| || | |||||||||||||||||||||||||||| ||||||||||||||||| | | ||||| | ||||||||||||      
T  10173629 ttttgattcgagatcggaagtaagttatttggctcaagtttggttttgggcttttgttggtgttctttcggtgaatcggaggtcgagaggtggtggaagt 10173530  T
Q  100 tgattgatctttagaata 117  Q
    ||| |||||||| |||||    
T  10173529 tgaatgatcttttgaata 10173512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 124
Target Start/End: Complemental strand, 43816469 - 43816384
Alignment:
Q  39 tttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaactgattgatctttagaatagtggctc 124  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||   ||||||||||  ||||||||||||||||||||||||||    
T  43816469 tttggttttgggcttttttggtattctttcggtggaccagaggtttaaaggtggtggaggctgattgatctttagaatagtggctc 43816384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 18681096 - 18681208
Alignment:
Q  2 tttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaactg 101  Q
    ||||||||||||||||||||||| ||| ||| |||||||||||||||||||||| |||||||| || |||| | |||||||||   ||||||| || |||    
T  18681096 tttgattcgagatcgggagtcagttctctggttcaagtttggttttgggcttttgtggtgttcctttggtggatcagaggttgcacggtggtgaaagctg 18681195  T
Q  102 attgatctttaga 114  Q
    | |||||||||||    
T  18681196 aatgatctttaga 18681208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 17079199 - 17079271
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggc-ttttttggtgttctttcggtg 72  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||| | |||||||||||||||||||||    
T  17079199 ttttgattcgagatcgggagccagttctttggctcaagtttggttttggacattttttggtgttctttcggtg 17079271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 34230231 - 34230341
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagaggttgtgaggtggtggaaac 99  Q
    |||| |||||||||| |||||||| ||||||| ||||||||| ||||||||||||| |||| ||||||||||| | | ||||||| |||||||||||| |    
T  34230231 tttttattcgagatcaggagtcagttctttggatcaagtttgattttgggctttttgtggt-ttctttcggtggatcggaggttgagaggtggtggaagc 34230329  T
Q  100 tgattgatcttt 111  Q
    ||| ||||||||    
T  34230330 tgaatgatcttt 34230341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 31902465 - 31902352
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    |||| ||||||||||||||||||| ||| ||| ||||||||||||||| |||| |||| ||||| || |||| ||| ||||||| | ||||| |||| ||    
T  31902465 ttttaattcgagatcgggagtcagttctctggttcaagtttggttttgagcttatttgatgttcctttggtggaccggaggttgcgtggtgggggaagct 31902366  T
Q  101 gattgatctttaga 114  Q
    || |||||||||||    
T  31902365 gaatgatctttaga 31902352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 14405228 - 14405330
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt--tttggtgttctttcggtgtaccagaggttgtgaggtggtggaaa 98  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||||  ||| ||| |||||||||| | |||| || | | ||| |||||||    
T  14405228 ttttgattcgagatcgggagtcagctctttggctcaagttggtttttgggcttttgttttgtgctctttcggtggatcagaagtcgagtggttgtggaaa 14405327  T
Q  99 ctg 101  Q
    |||    
T  14405328 ctg 14405330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 7695993 - 7696102
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    ||||||||||| | |||||||||| ||||||||||||||| ||||||||||||||  ||| ||||||||||| | |  |||| | |||||||||||| ||    
T  7695993 ttttgattcgataccgggagtcagttctttggctcaagttaggttttgggcttttacggt-ttctttcggtggatcgaaggtcgggaggtggtggaagct 7696091  T
Q  101 gattgatcttt 111  Q
    || ||||||||    
T  7696092 gaatgatcttt 7696102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 29487160 - 29487301
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggtttt-gggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaac 99  Q
    |||||||||||||| |  |||||| |||| || ||| |||||||||| ||||| || || ||||||||||||  ||||||||||||| |||||||||| |    
T  29487160 ttttgattcgagattgatagtcagttcttcggttcatgtttggtttttgggctgttatgatgttctttcggttgaccagaggttgtgtggtggtggaagc 29487259  T
Q  100 tgattgatctttagaatagtggctcaacttaggcgatgcgga 141  Q
    ||||||||   | ||||||||||||  |||||| | ||||||    
T  29487260 tgattgattcatggaatagtggctcggcttaggagttgcgga 29487301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 1269513 - 1269568
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt 56  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  1269513 ttttgattcgagatcggaagtcagttctttggctcaagtttggttttgggattttt 1269568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 7874321 - 7874375
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttt 55  Q
    ||||||||||||||||||||||||||||||| |||||||| | ||||||||||||    
T  7874321 ttttgattcgagatcgggagtcagctctttgactcaagttggtttttgggctttt 7874375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 12793745 - 12793669
Alignment:
Q  37 agtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaactgattgatctttaga 114  Q
    ||||||||||||||||||| |||||||| |||| || ||| ||||||||| |||||||||| |||| |||||||||||    
T  12793745 agtttggttttgggcttttatggtgttccttcg-tggaccggaggttgtgcggtggtggaagctgaatgatctttaga 12793669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 39338916 - 39338863
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 54  Q
    |||||||||||||||||||||||| |||||| |||||||| | |||||||||||    
T  39338916 ttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggcttt 39338863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 114
Target Start/End: Original strand, 20572130 - 20572218
Alignment:
Q  26 tctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaactgattgatctttaga 114  Q
    |||||| || ||||||| ||||||| ||||||||||||||||||||| | |||| |||| ||| || | ||||||||  ||||||||||    
T  20572130 tctttgacttaagtttgattttgggtttttttggtgttctttcggtggatcagaagttgagagatgcttgaaactgaacgatctttaga 20572218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 13337304 - 13337414
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagaggttgtgaggtggtggaaac 99  Q
    ||||||||||| ||||| |||||| |||||| |||||||| |||||||| |||||| |||| ||||||||||| |   ||||| | ||||||||| | ||    
T  13337304 ttttgattcgaaatcggaagtcagttctttgactcaagttaggttttggactttttatggt-ttctttcggtggataggaggtcgagaggtggtgaacac 13337402  T
Q  100 tgattgatcttt 111  Q
    ||| ||||||||    
T  13337403 tgaatgatcttt 13337414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 37770692 - 37770583
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    |||||||||  |||| |||||||  ||||| | |||| ||||||||||||||||| |||| ||||||||||| | | ||||| | |||||| ||||| ||    
T  37770692 ttttgattctggatcaggagtcaattctttagatcaattttggttttgggcttttatggt-ttctttcggtgaatcggaggtcgagaggtgttggaagct 37770594  T
Q  101 gattgatcttt 111  Q
    || ||||||||    
T  37770593 gaatgatcttt 37770583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 915503 - 915408
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaa 97  Q
    ||||||||||||||||  |||||| | ||||  ||||||||||||||||   ||||| || ||||||||||| ||| ||||||| | ||||||||||    
T  915503 ttttgattcgagatcgaaagtcagtt-tttgattcaagtttggttttggagctttttagtattctttcggtgcaccggaggttgcgcggtggtggaa 915408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 29044836 - 29044778
Alignment:
Q  52 ttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaactgattgatctt 110  Q
    ||||| ||||||||||||||| |||||||||||||  ||||||||  ||| ||||||||    
T  29044836 tttttaggtgttctttcggtggaccagaggttgtgcagtggtggaggctgtttgatctt 29044778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 238
Target Start/End: Original strand, 4472117 - 4472206
Alignment:
Q  151 ttattttgggttgagtagtggcaatgtatggttatggatatcgttttttcagtggtcgtttcttgaaggagt---ttttaggtggtgatgt 238  Q
    |||||||||||||  ||||||| ||   |||||||||||| || ||||||||||||| |||||| ||||| |   ||||||||||||||||    
T  4472117 ttattttgggttgtctagtggcgattggtggttatggataacg-tttttcagtggtcatttcttaaaggactctattttaggtggtgatgt 4472206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 41086826 - 41086738
Alignment:
Q  21 tcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagaggttgtgaggtggtggaaactgattgatcttt 111  Q
    |||||||||||| |  |||||||||||||||||||| |||| | ||||||||| | | ||||| | |||||||||||| |||| ||||||||    
T  41086826 tcagctctttggat--agtttggttttgggctttttatggt-tcctttcggtggatcggaggtcgagaggtggtggaagctgaatgatcttt 41086738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 27713099 - 27713238
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||| || |||||||||||||  | ||||||||| ||||||||||||||    
T  27713099 ttttgattcgagatcgggaatcagttctttggctcaagtttggttttgggcttttatgttgttctttcggtggtctagaggttgtcaggtggtggaaact 27713198  T
Q  101 gattgatctttagaatagtggctcaacttaggcgatgcgg 140  Q
     ||||||||||||||||||||||||||||| | |||||||    
T  27713199 tattgatctttagaatagtggctcaacttatgggatgcgg 27713238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 22675375 - 22675246
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||| |||  || ||||||||||||||||||||  |    
T  22675375 ttttgattcgagatcgggagtcagttctttggctcaagtttggttttgggctttaatggtgttctttcagtggtccggaggttgtgaggtggtggaagtt 22675276  T
Q  101 gattgatctttagaatagtggctcaactta 130  Q
    |||||||||||||| |||||||||||||||    
T  22675275 gattgatctttagactagtggctcaactta 22675246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 39184238 - 39184112
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaag--tttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaa 98  Q
    ||||||||||||||||| |||||| ||||||| |||||  |||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||     
T  39184238 ttttgattcgagatcggaagtcagttctttggttcaagcatttggttttgagcttttttggtgttctttcggtggaccagaggttgtgaggtagtggaag 39184139  T
Q  99 ctgattgatctttagaatagtggctca 125  Q
    ||||||||||||| |||||||||||||    
T  39184138 ctgattgatcttttgaatagtggctca 39184112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 8730947 - 8731076
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagttt-ggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaac 99  Q
    |||| ||||||||||||||||||| ||||||| ||| |||| |||||||||||||||||||||||||||| || |||  |||||  |||||||||||| |    
T  8730947 ttttaattcgagatcgggagtcagttctttggttcaggttttggttttgggcttttttggtgttctttcgatggaccgaaggttcagaggtggtggaagc 8731046  T
Q  100 tgattgatctttagaatagtggctcaactt 129  Q
    | |||||| |||||||||| ||||||||||    
T  8731047 taattgatatttagaatagcggctcaactt 8731076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 13954285 - 13954175
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagaggttgtgaggtggtggaaac 99  Q
    |||||||||||||||||||||||   |||||||||||||||||||||||||||||| |||| ||||||||||| | | || ||||  |||||||||||||    
T  13954285 ttttgattcgagatcgggagtcattactttggctcaagtttggttttgggctttttatggt-ttctttcggtggatcggaagttgaaaggtggtggaaac 13954187  T
Q  100 tgattgatcttt 111  Q
    ||||||||||||    
T  13954186 tgattgatcttt 13954175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 8297498 - 8297594
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagaggttgtgaggtggtggaa 97  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||| ||||||||||| | | ||||| ||||||||||||||    
T  8297498 ttttgattcgagatcgggagtcagttctttggctcaagtttggttttggactttttatggt-ttctttcggtgaatcggaggtcgtgaggtggtggaa 8297594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 24072317 - 24072190
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    |||||||| |||||||| |||||| ||||||| ||||||| | ||| ||| ||||||||||||||||||||| ||| |||||||  ||||||| ||  ||    
T  24072317 ttttgatttgagatcggaagtcagttctttggttcaagtt-gatttggggtttttttggtgttctttcggtggaccggaggttgaaaggtggttgatgct 24072219  T
Q  101 gattgatctttagaatagtggctcaactt 129  Q
    || || |||||||||||||| ||||||||    
T  24072218 gaatggtctttagaatagtgactcaactt 24072190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 31721707 - 31721820
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    |||||||||||||||||||||||| ||| ||| |||  |||||||||||| | ||||||||||| ||| ||| ||| || |||| | ||||||||||  |    
T  31721707 ttttgattcgagatcgggagtcagttctctggttcatttttggttttgggttgttttggtgttccttcagtggaccggatgttgcgcggtggtggaagtt 31721806  T
Q  101 gattgatctttaga 114  Q
    ||||||||||||||    
T  31721807 gattgatctttaga 31721820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 21402882 - 21402778
Alignment:
Q  7 ttcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagaggttgtgaggtggtggaaactgattg 105  Q
    |||||||||||||||||| |||||| |||| ||||||||||| ||||||| |||| ||||||||||| |   ||||||| ||||||||||||  ||||||    
T  21402882 ttcgagatcgggagtcagttctttgactcaggtttggttttgagctttttatggt-ttctttcggtggattggaggttgagaggtggtggaagttgattg 21402784  T
Q  106 atcttt 111  Q
    ||||||    
T  21402783 atcttt 21402778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 14302481 - 14302371
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagaggttgtgaggtggtggaaac 99  Q
    ||||| |||||||| ||||||||| |||||||  |||||||||||||||||||||| |||| ||||||||||| | | ||||| | |||||||||||| |    
T  14302481 ttttggttcgagattgggagtcagttctttggagcaagtttggttttgggctttttatggt-ttctttcggtggatcggaggtcgagaggtggtggaagc 14302383  T
Q  100 tgattgatcttt 111  Q
    ||  ||||||||    
T  14302382 tgcatgatcttt 14302371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 7195290 - 7195181
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    |||||||||||||||||||||||| ||||||||||||||| |  ||||||||||| |||| || |||||||| | | ||||| | ||||| |||||| ||    
T  7195290 ttttgattcgagatcgggagtcagttctttggctcaagttagagtttgggcttttatggt-ttttttcggtggatcggaggtcgagaggtcgtggaagct 7195192  T
Q  101 gattgatcttt 111  Q
    || | ||||||    
T  7195191 gaataatcttt 7195181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 23426427 - 23426505
Alignment:
Q  65 tttcggtgtaccagaggttgtgaggtggtggaaactgattgatctttagaatagtggctcaacttaggcgatgcggaca 143  Q
    |||||||| ||||||||||||| |||||||||| ||||||||||  | |||| |||||||| |||||| | ||||||||    
T  23426427 tttcggtggaccagaggttgtgtggtggtggaagctgattgatccatggaattgtggctcagcttaggagttgcggaca 23426505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 34378128 - 34378210
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt-tttggtgttctttcggtgtaccagaggt 82  Q
    |||||||||||||||||||||||| |||||| | |||||| | ||||||||||| ||| ||| |||||||||| ||| |||||    
T  34378128 ttttgattcgagatcgggagtcagttctttgacacaagttggtttttgggctttgttttgtgctctttcggtggaccggaggt 34378210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 698391 - 698444
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 54  Q
    ||||||||||||||||||||||| ||||||| |||||||| | |||||||||||    
T  698391 ttttgattcgagatcgggagtcaactctttgactcaagttggtttttgggcttt 698444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 7392082 - 7391979
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    |||||||||||||||||||||||| ||||||||      |||||||||||||||| |||| ||||||||||| | | ||||| | |||||||| ||| |     
T  7392082 ttttgattcgagatcgggagtcagttctttggc-----attggttttgggcttttatggt-ttctttcggtggatcggaggtcgagaggtggttgaagcg 7391989  T
Q  101 gattgatctt 110  Q
    ||||||||||    
T  7391988 gattgatctt 7391979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 17854118 - 17854001
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctt-ttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaac 99  Q
    |||||| ||||||||||||||||  | ||||| |||||||    ||||||||| ||||  ||||||||||||| ||| || |||| ||||||||||||      
T  17854118 ttttgactcgagatcgggagtcaattatttggttcaagttctactttgggcttattttaatgttctttcggtggacctgaagttgagaggtggtggaagt 17854019  T
Q  100 tgattgatctttagaata 117  Q
    ||| ||||||||||||||    
T  17854018 tgaatgatctttagaata 17854001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 39024501 - 39024452
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttggg 50  Q
    |||||||||||||||||||||||  ||||||| |||||||||||||||||    
T  39024501 ttttgattcgagatcgggagtcacttctttggttcaagtttggttttggg 39024452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 25992037 - 25992092
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt 56  Q
    |||||||||||||||| ||||||| ||||| |||| || |||||||||||||||||    
T  25992037 ttttgattcgagatcgagagtcagttctttagctcgaggttggttttgggcttttt 25992092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 26046015 - 26045960
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt 56  Q
    ||||||||||||||||||||| ||   |||||||||||||||||||||| ||||||    
T  26046015 ttttgattcgagatcgggagttagtgttttggctcaagtttggttttggacttttt 26045960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 18593273 - 18593325
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctt 53  Q
    ||||||||||||||||||||| || |||||| |||||||| | ||||||||||    
T  18593273 ttttgattcgagatcgggagttagttctttgactcaagttggtttttgggctt 18593325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 236
Target Start/End: Complemental strand, 39184071 - 39183985
Alignment:
Q  151 ttattttgggttgagtagtggcaatgtatggttatggatatcgttttttcagtggtcgtttcttgaaggagt---ttttaggtggtgat 236  Q
    |||||||||| | ||||||||| |||| |||||||||||| ||||||| ||||||||||||| |||  ||||   ||||||||||||||    
T  39184071 ttattttgggataagtagtggcgatgt-tggttatggataccgttttt-cagtggtcgtttcgtgatagagtctgttttaggtggtgat 39183985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 17853937 - 17853870
Alignment:
Q  154 ttttgggttgagtagtggcaatgtatggttatggatatcgttttttcagtggtcgtttcttgaaggagt 222  Q
    ||||||| ||||||||||  |||  |||||||||||||||| ||||||||| ||||||| | |||||||    
T  17853937 ttttggggtgagtagtggtgatgggtggttatggatatcgt-ttttcagtgatcgtttcgtaaaggagt 17853870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 31742377 - 31742428
Alignment:
Q  154 ttttgggttgagtagtggcaatgtatggttatggatatcgttttttcagtggt 206  Q
    ||||||| ||||||||||| |||  || |||||||||||||||||||||||||    
T  31742377 ttttggggtgagtagtggcgatgggtg-ttatggatatcgttttttcagtggt 31742428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 33258933 - 33258862
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtg 72  Q
    ||||||||||||||| ||||| || ||||||| || || |||| |||||||||||| |||| |||||||||||    
T  33258933 ttttgattcgagatcaggagttagttctttggttcgaggttggatttgggctttttatggt-ttctttcggtg 33258862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 50589258 - 50589023
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    ||||||||||| |||||||| ||| |||||||| ||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||| |||  |    
T  50589258 ttttgattcgaaatcgggagccagttctttggcccaagtttggttttgggcttatttagtgttctttcggtggaccagaggttgtgaggtggtagaagtt 50589159  T
Q  101 gattgatctttagaatagtggctcaacttaggcgatgcggacagagtg----attta-----------ttttgggttgagtagtggcaatgtatggttat 185  Q
    ||||||||||| ||||||| |||||||||||| ||||| ||| |||||    |||||           |||||||||||||||||||||||   ||||||    
T  50589158 gattgatctttggaatagtagctcaacttaggtgatgcagacggagtgtttcatttagagggggttatttttgggttgagtagtggcaatgggaggttat 50589059  T
Q  186 ggatatcgttttttcagtggtcgtttcttgaaggagt 222  Q
    |||||||| |||||| ||||||| |||||| ||||||    
T  50589058 ggatatcg-tttttcggtggtcggttcttgtaggagt 50589023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 19598666 - 19598921
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    |||||||||||||||| ||||||| |||||| |||||||||| ||||||| |||| ||||||||||||||||  || ||||||||||||||||||||  |    
T  19598666 ttttgattcgagatcgagagtcagttctttgactcaagtttgattttgggtttttatggtgttctttcggtggtccggaggttgtgaggtggtggaagtt 19598765  T
Q  101 gattgatctttagaatagtggctcaacttaggcgatgcggacagagtgatt---------------tattttgggttgagtagtggcaatgtatggttat 185  Q
    |||||||||||||||||  ||||||||||| | ||| |||  |||||| ||               ||||||||||||||||||||| ||| ||||||||    
T  19598766 gattgatctttagaataacggctcaacttatgggatacggctagagtgtttcttttagaggggggttattttgggttgagtagtggcgatggatggttat 19598865  T
Q  186 ggatatcgttttttcagtggtcgtttcttgaagga----gtttttaggtggtgatgt 238  Q
    |||| | ||||||| |||||| ||||| |||||||     |||||||||||||||||    
T  19598866 ggattttgtttttt-agtggtggtttcgtgaaggaatctatttttaggtggtgatgt 19598921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 42374193 - 42374335
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagttt-ggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaac 99  Q
    |||||||| |||||||||||||||   ||||| |||||||| |||||||||||| ||||| ||||||||||  |||| ||| ||| |||||||||||| |    
T  42374193 ttttgatttgagatcgggagtcagtcttttggttcaagttttggttttgggcttgtttggcgttctttcggcataccggagattgagaggtggtggaagc 42374292  T
Q  100 tgattgatctttagaatagtggctcaacttaggcgatgcggac 142  Q
    |||||||||||||||||||||||||||||| || |||| ||||    
T  42374293 tgattgatctttagaatagtggctcaactttggtgatgaggac 42374335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 4651810 - 4651922
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    |||||||||||||||||||||||| ||| ||| || |||||||||||||||||||||||||||| ||||||| ||| ||||||| | |||||||||| ||    
T  4651810 ttttgattcgagatcgggagtcag-tctctggttctagtttggttttgggcttttttggtgttccttcggtggaccggaggttgcgcggtggtggaagct 4651908  T
Q  101 gattgatctttaga 114  Q
    || |||||||||||    
T  4651909 gaatgatctttaga 4651922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 17033616 - 17033760
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagttt-ggttttgggcttttttg-gtgttctttcggtgtaccagaggttgtgaggtggtggaaa 98  Q
    |||||| ||||||||||||||||| ||||||| |||||||| ||||||||||||||||  |||||||||||| |  || |||||| ||||||| || ||     
T  17033616 ttttgaatcgagatcgggagtcagttctttggttcaagttttggttttgggcttttttttgtgttctttcggcgatcctgaggttatgaggtgatgcaag 17033715  T
Q  99 ctgattgatctttagaatagtggctcaacttaggcgatgcggaca 143  Q
    ||||||||||||||||||| ||||||||||| || |||| |||||    
T  17033716 ctgattgatctttagaataatggctcaactttggtgatgaggaca 17033760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 27102221 - 27102331
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||  |  ||||||||||| | | ||||| | |||||||||||| ||    
T  27102221 ttttgattcgagatcgggagtcagttctttggatcaagtttggttttgggctttttacggtttctttcggtggatcggaggtcgagaggtggtggaagct 27102320  T
Q  101 gattgatcttt 111  Q
    || ||||||||    
T  27102321 gaatgatcttt 27102331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 38544789 - 38544664
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagttt-ggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaac 99  Q
    |||||||||||||||||||||||| ||||||| | |||||| ||||||| | |||||| ||||||| ||| || | | ||| ||  || |||||||||      
T  38544789 ttttgattcgagatcgggagtcagttctttggtttaagttttggttttgaggttttttagtgttctctcgatgaatcggagattaagaagtggtggaaga 38544690  T
Q  100 tgattgatctttagaatagtggctca 125  Q
    ||||||||||||||||||||||||||    
T  38544689 tgattgatctttagaatagtggctca 38544664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 10785510 - 10785455
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt 56  Q
    ||||| |||||||||||||||||| | |||||||||||||||||||||||||||||    
T  10785510 ttttgcttcgagatcgggagtcagttgtttggctcaagtttggttttgggcttttt 10785455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 24658959 - 24659057
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt--tttggtgttctttcggtgtaccagaggttgtgaggtggtggaa 97  Q
    |||||||||||||||||||||||||||||||||| ||||| | |||||||||||  ||| ||| |||||||||| | | ||||| | ||||| ||||||    
T  24658959 ttttgattcgagatcgggagtcagctctttggctgaagttggtttttgggctttggttttgtgctctttcggtggatcggaggtcgagaggttgtggaa 24659057  T

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Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 5389472 - 5389419
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 54  Q
    |||||||||||||||||||||||| |||||| |||||||||| |||||||||||    
T  5389472 ttttgattcgagatcgggagtcagttctttgactcaagtttgtttttgggcttt 5389419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 34774907 - 34775007
Alignment:
Q  8 tcgagatcgggagtcagctcttt-ggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagaggttgtgaggtggtggaaactgattg 105  Q
    ||||||||||||||||| | ||| ||||||||||| |||||||||||||| |||| ||||||||||| |   ||||||| |||||||||||| |||||||    
T  34774907 tcgagatcgggagtcagtttttttggctcaagtttagttttgggctttttatggt-ttctttcggtgaattggaggttgagaggtggtggaagctgattg 34775005  T
Q  106 at 107  Q
    ||    
T  34775006 at 34775007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 6583267 - 6583157
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagaggttgtgaggtggtggaaac 99  Q
    ||||||||||||||||| |||||  ||||||| |||  |||||||||  ||||||| |||| ||||||||||| | | ||||| | |||||||||||| |    
T  6583267 ttttgattcgagatcggcagtcaattctttggatcagttttggttttttgctttttatggt-ttctttcggtgaatcggaggtcgagaggtggtggaagc 6583169  T
Q  100 tgattgatcttt 111  Q
    ||||||||||||    
T  6583168 tgattgatcttt 6583157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 27031891 - 27031793
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt--tttggtgttctttcggtgtaccagaggttgtgaggtggtggaa 97  Q
    |||||||||||||||| ||||||||||||||||||||||| | ||| ||| |||  ||| ||| |||||||||| | | ||||||| ||||| ||||||    
T  27031891 ttttgattcgagatcgagagtcagctctttggctcaagttggttttagggattttgttttgtgctctttcggtggatcggaggttgagaggttgtggaa 27031793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 46814518 - 46814464
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttt 55  Q
    |||||||||||||||||||||||||| ||||||||||||| | |||| |||||||    
T  46814518 ttttgattcgagatcgggagtcagctttttggctcaagttggttttttggctttt 46814464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 31585811 - 31585758
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 54  Q
    |||||||||||||||||||||||| |||||| |||||||| | |||||||||||    
T  31585811 ttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggcttt 31585758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 41920482 - 41920535
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 54  Q
    |||||||||||||||||||||||| |||||| |||||||| | |||||||||||    
T  41920482 ttttgattcgagatcgggagtcagttctttgactcaagttggattttgggcttt 41920535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 46692870 - 46692817
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 54  Q
    ||||||||||||||||||||| || ||||||||||||||| | |||||||||||    
T  46692870 ttttgattcgagatcgggagttagttctttggctcaagttggtttttgggcttt 46692817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 2988138 - 2988058
Alignment:
Q  34 tcaagtttggttttgggctttttt-ggtgttctttcggtgtaccagaggttgtgaggtggtggaaactgattgatctttag 113  Q
    ||||||||| |||||||||||||| ||||||| |||| |  ||| ||||||||| |||||||||| |||| ||||||||||    
T  2988138 tcaagtttgattttgggctttttttggtgttccttcgatagaccggaggttgtgcggtggtggaagctgaatgatctttag 2988058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 32864612 - 32864517
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagaggttgtgaggtggtgga 96  Q
    |||| |||||||||||| |||| | |||||| |||||||||||||||||||||||| |||| ||||||  ||| | ||||||| | |||||||||||    
T  32864612 ttttaattcgagatcggaagtcggttctttgactcaagtttggttttgggctttttatggt-ttctttttgtggatcagaggtcgggaggtggtgga 32864517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 28395103 - 28395026
Alignment:
Q  39 tttggttttgggctttt-ttggtgttctttcggtgtaccagaggttgtgaggtggtggaaactgattgatctttagaa 115  Q
    ||||||||||||||||| |||||| ||||| |||| ||| ||||||||| | ||||||||  ||| ||||||||||||    
T  28395103 tttggttttgggcttttattggtgctcttttggtggaccggaggttgtgggttggtggaaggtgaatgatctttagaa 28395026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 30685955 - 30685902
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 54  Q
    |||||||| ||||||||||||||| |||||| |||||||| | |||||||||||    
T  30685955 ttttgatttgagatcgggagtcagttctttgactcaagttggcttttgggcttt 30685902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 16147585 - 16147641
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttttt 57  Q
    ||||||||| | |||||||||||| ||||||| ||||||||| |||||| |||||||    
T  16147585 ttttgattcaatatcgggagtcagttctttgggtcaagtttgattttggactttttt 16147641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 7857683 - 7857737
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttt 55  Q
    ||||||||||||||||||||||| |||||| ||| ||||| | |||||| |||||    
T  7857683 ttttgattcgagatcgggagtcaactcttttgctgaagttggtttttggcctttt 7857737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 9313340 - 9313307
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggct 34  Q
    |||||||||||||||||||||||| |||||||||    
T  9313340 ttttgattcgagatcgggagtcagttctttggct 9313307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 38548941 - 38548856
Alignment:
Q  155 tttgggttgagtagtggcaatgtatggttatggatatcgttttttcagtggtcgtttcttgaaggagt---ttttaggtggtgatgt 238  Q
    |||||| ||||||||| | |||  |||||||| ||||||| ||||||||| ||||||| |||| ||||   ||||||||||||||||    
T  38548941 tttgggatgagtagtgacgatgggtggttatgaatatcgt-ttttcagtgatcgtttcgtgaaagagtctgttttaggtggtgatgt 38548856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 28966897 - 28967026
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||  | |||||||||||||  || |||||||||||||||||||| ||    
T  28966897 ttttgattcgagattgggagtcagttctttggctcaagtttggttttgggcttttaggatgttctttcggtggtccggaggttgtgaggtggtggaagct 28966996  T
Q  101 gattgatctttagaatagtggctcaactta 130  Q
    ||||||||| ||||||||||||||| ||||    
T  28966997 gattgatctctagaatagtggctcatctta 28967026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 12296205 - 12296352
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    |||||||||||||||   |||||| ||||||| ||||||||| ||||||||||||||||||||||||||||| ||| ||||||||| |||||||||| ||    
T  12296205 ttttgattcgagatcaaaagtcagttctttggttcaagtttgattttgggcttttttggtgttctttcggtggaccggaggttgtgtggtggtggaagct 12296304  T
Q  101 gattgatctttagaatagtggctcaacttaggcgatgcggacagagtg 148  Q
    | ||| |||||||| ||||||||||||||||| |||| |||| |||||    
T  12296305 ggttgttctttagagtagtggctcaacttaggtgatgaggacggagtg 12296352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 38929857 - 38929986
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    |||||||||||||||  ||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||  || ||||||||||||||||||||  |    
T  38929857 ttttgattcgagatcaagagtcagttctttggctcaagtttgattttgggcttttatggtgttctttcggtgatccggaggttgtgaggtggtggaagtt 38929956  T
Q  101 gattgatctttagaatagtggctcaactta 130  Q
    ||||||||||| |||||||  |||||||||    
T  38929957 gattgatctttggaatagtcactcaactta 38929986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 21983857 - 21983734
Alignment:
Q  16 gggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaactgattgatctttagaa 115  Q
    ||||||||| |||||||||||||||| ||| ||||||||| ||||||||||||||||  || ||||||||||||||||||||  ||||||||||||||||    
T  21983857 gggagtcagttctttggctcaagtttagttatgggcttttatggtgttctttcggtggtccggaggttgtgaggtggtggaagttgattgatctttagaa 21983758  T
Q  116 tagtggctcaacttaggcgatgcg 139  Q
    ||||| |||| |||||| ||||||    
T  21983757 tagtgactcagcttaggggatgcg 21983734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 35800519 - 35800629
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    ||||||||||||||||| |||||| ||||||  || |||||||||||||||||||||||||||||||||||| ||| ||||||  | |||||||||| ||    
T  35800519 ttttgattcgagatcggaagtcagttctttgattccagtttggttttgggcttttttggtgttctttcggtggaccggaggtttcgcggtggtggaacct 35800618  T
Q  101 gattgatcttt 111  Q
    || ||||||||    
T  35800619 gaatgatcttt 35800629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 16501761 - 16501858
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttttt-ggtg-ttctttcggtgtaccagaggttgtgaggtggtgga 96  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||| ||||||||||| ||| ||| ||||| |||||||||    
T  16501761 ttttgattcgagatcgggagtcagctctttggttctagtttggttttgggcttttttaggtgtttctttcggtggaccggagattgtgcggtggtgga 16501858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 46698836 - 46698712
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaag-tttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaac 99  Q
    |||||||||||||||||||||||| ||||||| ||||| |||| ||||||||| ||| ||||||||||||||  |   ||||||   | ||||||||| |    
T  46698836 ttttgattcgagatcgggagtcagttctttggttcaagttttgtttttgggctgtttaggtgttctttcggtagattggaggtttaaaagtggtggaagc 46698737  T
Q  100 tgattgatctttagaatagtggctc 124  Q
    ||||| |||||||||||||||||||    
T  46698736 tgattcatctttagaatagtggctc 46698712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 53823472 - 53823362
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagaggttgtgaggtggtggaaac 99  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||| ||||||||||  | |  |||| | ||||||||||||      
T  53823472 ttttgattcgagatcgggagtcagttctttggctcaagtttggttttgggttttttatggt-ttctttcggttgatcgaaggtcgagaggtggtggaagt 53823374  T
Q  100 tgattgatcttt 111  Q
    ||||||||||||    
T  53823373 tgattgatcttt 53823362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 41118018 - 41117901
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagaggttgtgaggtggtggaaac 99  Q
    ||||||||||||||||| ||| || |||||||||||| || ||||||||||||||| |||| |||||||| || | ||||||| | |||||||||||| |    
T  41118018 ttttgattcgagatcggaagtaagttctttggctcaaattaggttttgggctttttatggt-ttctttcgatggatcagaggtcgagaggtggtggaagc 41117920  T
Q  100 tgattgatctttagaatag 118  Q
    ||| |||||||| ||||||    
T  41117919 tgaatgatctttcgaatag 41117901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 25753202 - 25753257
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt 56  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  25753202 ttttgattcgagatcgggagtcagttctttggctcaagtttgattttgggcttttt 25753257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 19673135 - 19673201
Alignment:
Q  6 attcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtg 72  Q
    |||||||||| |||||||| |||||||||||||||| |||||||| ||| |||||||||||||||||    
T  19673135 attcgagatcaggagtcagttctttggctcaagtttagttttgggttttgttggtgttctttcggtg 19673201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 22811211 - 22811156
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt 56  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  22811211 tttttattcgagatcgggagtcagttctttggctcaagtttggttttaggcttttt 22811156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 115
Target Start/End: Complemental strand, 43374120 - 43374031
Alignment:
Q  26 tctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaactgattgatctttagaa 115  Q
    ||||||| ||||||||| ||| | | ||||||||||||||||| ||| | | ||||||| | |||||||||| |||||||||||||||||    
T  43374120 tctttggttcaagtttgatttcgaggttttttggtgttctttcagtggatcggaggttgcgcggtggtggaagctgattgatctttagaa 43374031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 38637283 - 38637174
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagaggttgtgaggtggtggaaac 99  Q
    |||||||||||||||||||||||  ||||||||| ||| | ||||||||||||||| |||| |||||| |||| | | ||||| | |||||||||||| |    
T  38637283 ttttgattcgagatcgggagtcaattctttggcttaag-taggttttgggctttttatggt-ttcttttggtggatcggaggtcgagaggtggtggaagc 38637186  T
Q  100 tgattgatcttt 111  Q
    ||| ||||||||    
T  38637185 tgaatgatcttt 38637174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 19815275 - 19815161
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttg----gttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtgga 96  Q
    |||| |||||||||| |||||||| ||||||||||||||||     |||||||| ||  ||||||||||||||||| ||| ||||| | ||| |||||||    
T  19815275 tttttattcgagatcaggagtcagttctttggctcaagtttaattagttttgggtttgattggtgttctttcggtggaccggaggtcgagagatggtgga 19815176  T
Q  97 aactgattgatcttt 111  Q
    | || | ||||||||    
T  19815175 agctaaatgatcttt 19815161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 38930021 - 38930094
Alignment:
Q  151 ttattttgggttgagtagtggcaatgtatggttatggatatcgttttttcagtggtcgtttcttgaaggagttt 224  Q
    |||||||||||||||||||| | |||| |||||||| || | |||||||||||||| ||||| |||||| ||||    
T  38930021 ttattttgggttgagtagtgacgatgtgtggttatgaattttgttttttcagtggtggtttcgtgaaggggttt 38930094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 43077008 - 43077126
Alignment:
Q  1 ttttgattcgagatcgggagtcagct---ctttggctcaagtttggttttgggctttttt-ggtgttctttcggtgtaccagaggttgtgaggtggtgga 96  Q
    |||| ||||||||||| |||||| ||   |||||| ||||||||| |||||||||||||| ||||||||||||||  | | || |||||  |||||||||    
T  43077008 tttttattcgagatcgagagtcaacttttctttggttcaagtttgcttttgggcttttttaggtgttctttcggttgatcggatgttgtacggtggtgga 43077107  T
Q  97 aactgattgatctttagaa 115  Q
      ||||| |||||||||||    
T  43077108 ggctgatcgatctttagaa 43077126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 24740149 - 24740054
Alignment:
Q  6 attcgagatcgggagtcagctctttggctcaagtttggttttgggct-tttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    |||| |||||||||||||| | ||||| |||| |||||||||||||| ||||||  |||||||| ||| | | ||||||||| |||||| ||||||    
T  24740149 attcaagatcgggagtcagttatttggttcaaatttggttttgggctctttttgtcgttctttccgtggatcggaggttgtgcggtggtagaaact 24740054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 39421064 - 39420958
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagaggttgtgaggtggtggaaac 99  Q
    |||||||||||||||||||||||  || || | |||  |||||||||||||||||| |||| || |||||||| | | ||| | | ||||||||||||||    
T  39421064 ttttgattcgagatcgggagtcaattccttagatcagttttggttttgggctttttatggt-ttttttcggtggatcggagatcgagaggtggtggaaac 39420966  T
Q  100 tgattgat 107  Q
    ||||||||    
T  39420965 tgattgat 39420958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 238
Target Start/End: Original strand, 12296370 - 12296460
Alignment:
Q  151 ttattttgggttgagtagtggcaatgtatggttatggatatcgttttttcagtggtcgtttcttgaagga----gtttttaggtggtgatgt 238  Q
    |||||||||| ||||||||||| |||  ||||||||||||||| |||||||||||||| |||   |||||    ||||||||||||||||||    
T  12296370 ttattttgggatgagtagtggcgatgggtggttatggatatcg-tttttcagtggtcgcttcggaaaggagtctgtttttaggtggtgatgt 12296460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 205
Target Start/End: Complemental strand, 21983708 - 21983654
Alignment:
Q  151 ttattttgggttgagtagtggcaatgtatggttatggatatcgttttttcagtgg 205  Q
    ||||||||||||||||||||||||||  ||||||||||| | |||||||| ||||    
T  21983708 ttattttgggttgagtagtggcaatgggtggttatggattttgttttttccgtgg 21983654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 35341389 - 35341335
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttt 55  Q
    ||||||| ||||||||| |||||||||||||||||||||| | |||||| |||||    
T  35341389 ttttgatccgagatcggaagtcagctctttggctcaagttggtttttggcctttt 35341335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 46487465 - 46487536
Alignment:
Q  150 tttattttgggttgagtagtggcaatgtatggttatggatatcgttttttcagtggtcgtttcttgaaggagt 222  Q
    |||||||| || ||||||||||| || | |||||||| |||||| |||||||||||||| ||| |||||||||    
T  46487465 tttattttaggatgagtagtggcgatatgtggttatgaatatcg-tttttcagtggtcgcttcatgaaggagt 46487536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 48098363 - 48098418
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt 56  Q
    ||||| |||||||||||||||||| |  |||| | |||||||||||||||||||||    
T  48098363 ttttgtttcgagatcgggagtcagtttgttggattaagtttggttttgggcttttt 48098418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 49747557 - 49747612
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt 56  Q
    |||||||| ||||||| ||||||| ||||| | ||||||||||||||| |||||||    
T  49747557 ttttgatttgagatcgagagtcagttcttttgatcaagtttggttttgagcttttt 49747612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 2061789 - 2061679
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    |||||||||||||| | ||||||| ||||||| |||  |||| ||||||||||||   |  ||||||||||| | | ||||| | ||||||||||||  |    
T  2061789 ttttgattcgagattgagagtcagttctttggatcagttttgattttgggcttttgatgatttctttcggtggatcggaggtcgagaggtggtggaagtt 2061690  T
Q  101 gattgatcttt 111  Q
    || ||||||||    
T  2061689 gaatgatcttt 2061679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 2825813 - 2825867
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttt 55  Q
    ||||||||||||||||||| ||| |||||||||||||  | | ||||||||||||    
T  2825813 ttttgattcgagatcgggaatcacctctttggctcaatgtggtttttgggctttt 2825867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 4305755 - 4305808
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 54  Q
    ||||||||||||||||||||| || |||||| |||||||| | |||| ||||||    
T  4305755 ttttgattcgagatcgggagttagttctttgtctcaagttggtttttaggcttt 4305808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 6599996 - 6599932
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggct-tttttggtgttc 64  Q
    |||||||| ||||||||||||| | ||||||  |||||||| |||||||||| ||| ||||||||    
T  6599996 ttttgattagagatcgggagtcggttctttgattcaagttttgttttgggctatttatggtgttc 6599932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 8255057 - 8255129
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt-tttggtgttctttcggtg 72  Q
    ||||||| ||||||| | |||||| |||||| |||||||| | ||||||||||| ||| ||| ||||||||||    
T  8255057 ttttgatccgagatcagaagtcagttctttgactcaagttggtttttgggctttgttttgtgctctttcggtg 8255129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 8268475 - 8268547
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt-tttggtgttctttcggtg 72  Q
    ||||||| ||||||| | |||||| |||||| |||||||| | ||||||||||| ||| ||| ||||||||||    
T  8268475 ttttgatccgagatcagaagtcagttctttgactcaagttggtttttgggctttgttttgtgctctttcggtg 8268547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 21387255 - 21387159
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaa 97  Q
    ||||||||||||||||| |||||| |||| |  ||||||||   ||||||||  |||||||||| ||| ||| ||| ||||||| || ||| |||||    
T  21387255 ttttgattcgagatcggaagtcagttcttcgattcaagtttttatttgggctaatttggtgttcgttcagtggaccggaggttgagatgtgatggaa 21387159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 48058705 - 48058576
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    |||||||| |||||||| |||||| | |||||||||||||||||||||| ||||| || |||||||||||||  |  |||||||||||||||||||| ||    
T  48058705 ttttgatttgagatcggaagtcagttttttggctcaagtttggttttggccttttatgttgttctttcggtggtctggaggttgtgaggtggtggaagct 48058606  T
Q  101 gattgatctttagaatagtggctcaactta 130  Q
    ||||||||||||||||||||||||||||||    
T  48058605 gattgatctttagaatagtggctcaactta 48058576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 47457073 - 47456949
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    |||||||| ||||| ||||||||| |||||||||||||||| ||| ||||||||| ||||||||||||||||  || || ||||||||||||||||| ||    
T  47457073 ttttgatttgagattgggagtcagttctttggctcaagtttagttatgggcttttatggtgttctttcggtggtccggaagttgtgaggtggtggaagct 47456974  T
Q  101 gattgatctttagaatagtggctca 125  Q
     ||||||||||||||||||| ||||    
T  47456973 aattgatctttagaatagtgactca 47456949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 13311869 - 13312000
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    |||||||||||||||||||||||| ||||||| ||||||| ||| ||||||| |||||| ||||||||| || || |||||||| |||||||||| | ||    
T  13311869 ttttgattcgagatcgggagtcagttctttggttcaagttaggtgttgggctgttttggcgttctttcgatggactagaggttgagaggtggtgggagct 13311968  T
Q  101 gattgatctttagaatagtggctcaacttagg 132  Q
    ||||||| |||||||||||| |||| ||||||    
T  13311969 gattgatatttagaatagtgtctcagcttagg 13312000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 9428156 - 9428030
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    ||||||||||||||| | |||||| |||| || || |||||||| ||||||| ||||||||||||||||||| |||||||||||||| ||||||||| ||    
T  9428156 ttttgattcgagatcagaagtcagttcttcggttctagtttggtcttgggctgttttggtgttctttcggtggaccagaggttgtgaagtggtggaagct 9428057  T
Q  101 gattgatctttagaatagtggctcaact 128  Q
     |||||||| | ||||||||||||||||    
T  9428056 -attgatctatggaatagtggctcaact 9428030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 11379178 - 11379052
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagttt-ggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaac 99  Q
    ||||||||||||||||||||||||  |||||| |||||||| |||||||||||||||||||||||||  |||  ||||||||||   ||||||||||  |    
T  11379178 ttttgattcgagatcgggagtcagtactttggttcaagttttggttttgggcttttttggtgttctt--ggttgaccagaggtttataggtggtggaggc 11379081  T
Q  100 tgattgatctttagaatagtggctcaact 128  Q
    |||||||||||||||||| ||||||||||    
T  11379080 tgattgatctttagaataatggctcaact 11379052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 12480916 - 12481031
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttttt-ggtgttctttcggtgtaccagaggttgtgaggtggtggaaac 99  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||| ||||||||||||||| ||  ||| ||||| |||||||||       
T  12480916 ttttgattcgagatcgggagtcagttctttggttcaagtttggtttttggcttttttaggtgttctttcggtggactggagattgtgcggtggtggagga 12481015  T
Q  100 tgattgatctttagaa 115  Q
    |||||||| |||||||    
T  12481016 tgattgatttttagaa 12481031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 46133329 - 46133214
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggtttt-gggctttttt-ggtgttctttcggtgtaccagaggttgtgaggtggtggaaa 98  Q
    |||||||| ||||||||||||||| ||| ||| |||||||||||||| |||||||||| ||||||| ||||||| ||| ||||||| | ||||| ||||     
T  46133329 ttttgatttgagatcgggagtcagttctctggttcaagtttggtttttgggctttttttggtgttccttcggtggaccggaggttgcgtggtgggggaag 46133230  T
Q  99 ctgattgatctttaga 114  Q
    ||||||||||||||||    
T  46133229 ctgattgatctttaga 46133214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 3478382 - 3478492
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    ||||||||||||||||||||| || ||||||||||||| || |||||||||||| ||||||||||||||||| | | ||| | | ||||||| |||| ||    
T  3478382 ttttgattcgagatcgggagttagttctttggctcaagattagttttgggctttgttggtgttctttcggtggatcggagatcgagaggtggcggaagct 3478481  T
Q  101 gattgatcttt 111  Q
    || ||||||||    
T  3478482 gaatgatcttt 3478492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 38485586 - 38485698
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    |||||||||||||||||||||||| | | ||| || |||||||||||||||||||||||||||| |||| || ||| |||||||   |||||||||| ||    
T  38485586 ttttgattcgagatcgggagtcag-tatctggttctagtttggttttgggcttttttggtgttccttcgatggaccggaggttgcacggtggtggaagct 38485684  T
Q  101 gattgatctttaga 114  Q
    || |||||||||||    
T  38485685 gaatgatctttaga 38485698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 22568163 - 22568043
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttttt-ggtgttctttcggtgtaccagaggttgtgaggtggtggaaac 99  Q
    |||||||||| |||||||||| || | ||||| |||||||| | ||| || |||||| ||||||||||||| | |||  |||||| ||||||||| ||||    
T  22568163 ttttgattcgtgatcgggagttagttttttggttcaagttttgattttggattttttaggtgttctttcggcggaccgaaggttgagaggtggtgaaaac 22568064  T
Q  100 tgattgatctttagaatagtg 120  Q
    |||||||||||||||||||||    
T  22568063 tgattgatctttagaatagtg 22568043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 6716787 - 6716678
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagaggttgtgaggtggtggaaac 99  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| |||| ||||||||||| | | || || | |||||||||||| |    
T  6716787 ttttgattcgagatcgggagtcagttctttggctcaagtttggtcttgggttttttatggt-ttctttcggtggatc-gaagtcgagaggtggtggaagc 6716690  T
Q  100 tgattgatcttt 111  Q
    ||||||||||||    
T  6716689 tgattgatcttt 6716678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 6584939 - 6585037
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt--tttggtgttctttcggtgtaccagaggttgtgaggtggtggaa 97  Q
    |||||||||||||||||||||||||||||||||| ||||| | |||||||||||  ||| ||| |||||||||| | | ||||||| ||||| ||||||    
T  6584939 ttttgattcgagatcgggagtcagctctttggcttaagttggtttttgggcttttgttttgtgctctttcggtggatcggaggttgagaggttgtggaa 6585037  T

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Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 42533303 - 42533194
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagaggttgtgaggtggtggaaac 99  Q
    |||||||||||||||||||||||   |||||||| |||||||| |||||||||||| |||| ||||||||||| | ||||||| |||||||||||| |||    
T  42533303 ttttgattcgagatcgggagtcaatcctttggcttaagtttgg-tttgggctttttatggt-ttctttcggtggatcagaggtcgtgaggtggtggcaac 42533206  T
Q  100 tgattgatcttt 111  Q
    |||  |||||||    
T  42533205 tgaacgatcttt 42533194  T

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Target: chr7; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 24324849 - 24324738
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaag-tttggttttgggcttttt-tggtgttctttcggtgtaccagaggttgtgaggtggtggaaa 98  Q
    |||||||||||||||||||||||  ||||||||||||| |||||||||||||||||| |||| |||||| |||| | | ||||| | | ||||||||||     
T  24324849 ttttgattcgagatcgggagtcaattctttggctcaagttttggttttgggctttttatggt-ttctttaggtggatcggaggtcgaggggtggtggaag 24324751  T
Q  99 ctgattgatcttt 111  Q
    |||| ||||||||    
T  24324750 ctgaatgatcttt 24324738  T

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Target: chr7; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 8745183 - 8745293
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagaggttgtgaggtggtggaaac 99  Q
    ||||||||||||||||||| |||| || |||| ||||||||||||||||||||||| |||| ||||||||||| | | ||||| | ||||| |||||| |    
T  8745183 ttttgattcgagatcgggattcagttcgttggatcaagtttggttttgggctttttatggt-ttctttcggtggatcggaggtcgagaggttgtggaagc 8745281  T
Q  100 tgattgatcttt 111  Q
    ||  ||||||||    
T  8745282 tgcatgatcttt 8745293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 34389992 - 34390090
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt--tttggtgttctttcggtgtaccagaggttgtgaggtggtggaa 97  Q
    |||||||||||||||||||||||||||||||||| ||||| | |||||||||||  ||| ||| |||||||||| | | ||||| | ||||| ||||||    
T  34389992 ttttgattcgagatcgggagtcagctctttggcttaagttggtttttgggcttttattttgtgctctttcggtggatcggaggtcgagaggttgtggaa 34390090  T

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Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 3419707 - 3419654
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 54  Q
    ||||||||||||||||||||||||||||||| |||||||| | |||||||||||    
T  3419707 ttttgattcgagatcgggagtcagctctttgactcaagttggtttttgggcttt 3419654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 35745878 - 35745824
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttt 55  Q
    ||||||||||||||||| ||||| |||||||||||||||| | ||||||||||||    
T  35745878 ttttgattcgagatcggaagtcatctctttggctcaagttggtttttgggctttt 35745824  T

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Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 36449113 - 36449210
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctt-ttttggtgttctttcggtgtaccagaggttgtgaggtggtggaa 97  Q
    |||| |||||||||  |||||||| ||||||| |||||||  ||||||| ||| ||||||| ||||||||||| | | ||||||| ||||||||||||    
T  36449113 tttttattcgagattaggagtcagttctttggttcaagttatgttttggacttattttggttttctttcggtggatcggaggttgagaggtggtggaa 36449210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 47325936 - 47325883
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 54  Q
    |||||||| |||||||||||||||||||||| |||||||| | |||||||||||    
T  47325936 ttttgatttgagatcgggagtcagctctttgactcaagttggtttttgggcttt 47325883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 237
Target Start/End: Complemental strand, 47456909 - 47456819
Alignment:
Q  151 ttattttgggttgagtagtggcaatgtatggttatggatatcgttttttcagtggtcgtttcttgaagg----agtttttaggtggtgatg 237  Q
    |||||||||||||||| ||||||||   ||||||||||| | |||||||||||||| ||||| ||||||     |||||||||||||||||    
T  47456909 ttattttgggttgagtggtggcaattggtggttatggattttgttttttcagtggtggtttcgtgaaggggtctgtttttaggtggtgatg 47456819  T

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Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 23983225 - 23983281
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttttt 57  Q
    |||||||||||||||||||||||  || || ||||||||||||||||||| ||||||    
T  23983225 ttttgattcgagatcgggagtcaattccttagctcaagtttggttttgggttttttt 23983281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 3867146 - 3867248
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttt--ttggtgttctttcggtgtaccagaggttgtgaggtggtggaaa 98  Q
    ||||||||||||| |||||||||| |||||| |||||||| | ||||||||||||  || ||| |||| ||||| | ||||||| | |||||  ||||||    
T  3867146 ttttgattcgagaccgggagtcagttctttgactcaagttggtttttgggcttttgctttgtgctcttgcggtggatcagaggtcgcgaggttatggaaa 3867245  T
Q  99 ctg 101  Q
    |||    
T  3867246 ctg 3867248  T

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Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 41089799 - 41089701
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt--tttggtgttctttcggtgtaccagaggttgtgaggtggtggaa 97  Q
    |||||||||||||| |||||||||||||||| |||||||| | ||||| |||||  ||| ||| |||||||||| | | ||||| | ||||| ||||||    
T  41089799 ttttgattcgagattgggagtcagctctttgactcaagttggtttttgagcttttgttttgtgatctttcggtggatcggaggtcgcgaggttgtggaa 41089701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 1320824 - 1320925
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaag-tttggttttgggcttttt-tggtgttctttcggtgtaccagaggttgtgaggtggtggaaa 98  Q
    ||||||||| | ||||| |||||| ||||||||||||| |||||||||||||||||| |||| ||||||||||| | | ||||| | |||| ||||| ||    
T  1320824 ttttgattcaaaatcggaagtcagttctttggctcaagttttggttttgggctttttatggt-ttctttcggtggatcggaggtcgagagggggtggcaa 1320922  T
Q  99 ctg 101  Q
    |||    
T  1320923 ctg 1320925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 129
Target Start/End: Original strand, 9107234 - 9107319
Alignment:
Q  44 ttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaactgattgatctttagaatagtggctcaactt 129  Q
    |||||||||||||| ||||||||||||||     ||||||| |||||||||||   ||  ||| ||||||||||||||||||||||    
T  9107234 ttttgggctttttttgtgttctttcggtgggaaggaggttgagaggtggtggatgttgggtgaactttagaatagtggctcaactt 9107319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 10244212 - 10244265
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 54  Q
    |||||||||||||||||||||||| |||||| |||||||| | |||||| ||||    
T  10244212 ttttgattcgagatcgggagtcagttctttgactcaagttagtttttggccttt 10244265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 37795019 - 37795072
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 54  Q
    |||||||||||||||||||||||| ||||||  ||||||| | |||||||||||    
T  37795019 ttttgattcgagatcgggagtcagttctttgagtcaagttggtttttgggcttt 37795072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 38306291 - 38306344
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 54  Q
    |||||||||||||| ||||||||| |||||| |||||||| | |||||||||||    
T  38306291 ttttgattcgagattgggagtcagttctttgactcaagttggtttttgggcttt 38306344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 12546370 - 12546322
Alignment:
Q  89 gtggtggaaactgattgatctttagaatagtggctcaacttaggcgatg 137  Q
    |||||||||  |||||||||||||||||||||||||| |||||| ||||    
T  12546370 gtggtggaagttgattgatctttagaatagtggctcagcttaggtgatg 12546322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 33435139 - 33435178
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtt 40  Q
    |||||||||||||||||||||||| |||||| ||||||||    
T  33435139 ttttgattcgagatcgggagtcagttctttgtctcaagtt 33435178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 197
Target Start/End: Original strand, 9107355 - 9107401
Alignment:
Q  151 ttattttgggttgagtagtggcaatgtatggttatggatatcgtttt 197  Q
    |||||||||| ||||||||||| |||  |||||||||||||||||||    
T  9107355 ttattttgggatgagtagtggcgatgggtggttatggatatcgtttt 9107401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 5860339 - 5860286
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 54  Q
    |||||||||||||||||||||||  |||||| | |||||| | |||||||||||    
T  5860339 ttttgattcgagatcgggagtcaattctttgacgcaagttggtttttgggcttt 5860286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 9349779 - 9349832
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 54  Q
    |||||||||||||||||||||||  |||  || ||||||||| |||||||||||    
T  9349779 ttttgattcgagatcgggagtcaattctcaggttcaagtttgattttgggcttt 9349832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 16828987 - 16828931
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagttt-ggttttgggcttttt 56  Q
    ||||| ||||||||||  |||||| |||||| ||||||||| |||||||||||||||    
T  16828987 ttttgtttcgagatcgaaagtcagttctttgactcaagttttggttttgggcttttt 16828931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 16954683 - 16954739
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagttt-ggttttgggcttttt 56  Q
    ||||| ||||||||||  |||||| |||||| ||||||||| |||||||||||||||    
T  16954683 ttttgtttcgagatcgaaagtcagttctttgactcaagttttggttttgggcttttt 16954739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 47945736 - 47945873
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    |||||||||||||||||||||||| | ||||||||||||||| |||||||||||| ||||||||||||||||  || ||| ||||||||||||||||  |    
T  47945736 ttttgattcgagatcgggagtcagttatttggctcaagtttgattttgggcttttatggtgttctttcggtggtccggagattgtgaggtggtggaagtt 47945835  T
Q  101 gattgatctttagaatagtggctcaacttaggcgatgc 138  Q
     |||||||||| |||||||||||||  ||||| |||||    
T  47945836 aattgatcttttgaatagtggctcagtttaggggatgc 47945873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 5556600 - 5556721
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagttt-ggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaac 99  Q
    |||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||  ||||||||||||||| ||| ||||||  |||||||||||  |    
T  5556600 ttttgattcgagatcgggagtcagttctttggttcaagttttggttttgggcttttcaggtgttctttcggtggaccggaggtttagaggtggtggaggc 5556699  T
Q  100 tgattgatctttagaatagtgg 121  Q
    || ||||||||||||| |||||    
T  5556700 tggttgatctttagaaaagtgg 5556721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 1652937 - 1652823
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    ||||||||||||||| ||||| || ||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||  | ||||| ||||  |    
T  1652937 ttttgattcgagatcaggagttagttctttggttcaagtttggttttgggcttttttggtgttctttcggtggaccggaggttaagcggtggcggaagtt 1652838  T
Q  101 gattgatctttagaa 115  Q
    || ||||||||||||    
T  1652837 gaatgatctttagaa 1652823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 114
Target Start/End: Original strand, 27398992 - 27399102
Alignment:
Q  5 gattcgagatcgggagtcagctctttggctcaagtttggttttgggctttt-ttggtgttctttcggtgtaccagaggttgtgaggtggtggaaactgat 103  Q
    |||||||| || |||||||| | ||||| |||||||||||||||||||||| |||||||||||| |||| ||||||||||| ||||||||||   ||||     
T  27398992 gattcgaggtcaggagtcagttatttggttcaagtttggttttgggctttttttggtgttcttttggtggaccagaggttgagaggtggtggttgctgaa 27399091  T
Q  104 tgatctttaga 114  Q
    |||||||||||    
T  27399092 tgatctttaga 27399102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 823486 - 823375
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctt-ttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaac 99  Q
    |||||||||||||||| ||||||| | |||   |||||||| ||||||||||| ||||||||||||||||||  ||||||||||| ||||||| |||| |    
T  823486 ttttgattcgagatcgagagtcagttgtttcattcaagttttgttttgggcttattttggtgttctttcggtagaccagaggttgagaggtggcggaagc 823387  T
Q  100 tgattgatcttt 111  Q
    ||| ||||||||    
T  823386 tgaatgatcttt 823375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 33144000 - 33143891
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaag-tttggttttgggcttttt-tggtgttctttcggtgtaccagaggttgtgaggtggtggaaa 98  Q
    |||||||||||||||||||||||| ||||||| ||||| || | ||||||||||||| |||| ||||||||||| | ||||||| | ||||||||||||     
T  33144000 ttttgattcgagatcgggagtcagttctttggatcaagattagtttttgggctttttatggt-ttctttcggtggatcagaggtcgcgaggtggtggaag 33143902  T
Q  99 ctgattgatct 109  Q
    |||||||||||    
T  33143901 ctgattgatct 33143891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 30935441 - 30935326
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtg-ttctttcggtgtaccagaggttgtgaggtggtggaaac 99  Q
    ||||||||| ||||||||||| || | ||||| ||||||||||||||| |||||||||||| ||||||| | | ||| ||| ||  | |||||||||| |    
T  30935441 ttttgattcaagatcgggagttagttatttggttcaagtttggttttgagcttttttggtgtttctttcagcggaccggagattacgcggtggtggaagc 30935342  T
Q  100 tgattgatctttagaa 115  Q
    ||| ||||||||||||    
T  30935341 tgaatgatctttagaa 30935326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 25594571 - 25594328
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    ||||||||| ||||||| ||| |  ||||||| ||||| |||| |||||||||||||||||||||||| |||           |||| ||||||||| |     
T  25594571 ttttgattctagatcggaagttaattctttggttcaagattggctttgggcttttttggtgttctttcagtg-----------gtgatgtggtggaagcg 25594483  T
Q  101 gattgatctttagaatagtggctcaacttaggcgatgcggacagagtgat---------------ttattttgggttgagtagtggcaatgtatggttat 185  Q
    ||||||||||||||||||||||||||||| || || | |||| ||||| |               |||| ||||| ||||||||||| |||  ||||| |    
T  25594482 gattgatctttagaatagtggctcaactttggagacgaggacggagtgttccatttagaggagtgttatcttgggatgagtagtggcgatgggtggtt-t 25594384  T
Q  186 ggatatcgttttttcagtggtcgtttcttgaaggagt---ttttaggtggtgatgt 238  Q
    ||||||||||||||||||||||||||  |||||||||   |||||||| |||||||    
T  25594383 ggatatcgttttttcagtggtcgttttgtgaaggagtatgttttaggtagtgatgt 25594328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 38488835 - 38488940
Alignment:
Q  11 agatcgggagtcagctctttggctcaagtttggttttgggcttt-tttggtgttctttcggtgtaccagaggttgtgaggtggtggaaactgattgatct 109  Q
    ||||||||||||||  |||||  ||||||||||||||||||||| || ||||||||||||||| ||| |||||||   ||| |||||  ||| |||||||    
T  38488835 agatcgggagtcagtgctttgtttcaagtttggttttgggctttgttaggtgttctttcggtggaccggaggttgcacggttgtggaggctggttgatct 38488934  T
Q  110 ttagaa 115  Q
    ||||||    
T  38488935 ttagaa 38488940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 37123412 - 37123467
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt 56  Q
    |||||||||||||| ||||||||| ||||||| |||| ||||||||||||||||||    
T  37123412 ttttgattcgagattgggagtcagttctttggatcaaatttggttttgggcttttt 37123467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 43012405 - 43012503
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt--tttggtgttctttcggtgtaccagaggttgtgaggtggtggaa 97  Q
    |||||||||||||||||||||||| |||||| |||||||| | ||||| |||||  ||| ||| |||||||||| | ||||||| | ||||| ||||||    
T  43012405 ttttgattcgagatcgggagtcagttctttgactcaagttggtttttgagcttttgttttgtgctctttcggtgaatcagaggtcgcgaggttgtggaa 43012503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 19176532 - 19176586
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttt 55  Q
    |||||||||||||||||||||||| |||||| |||||||| | ||||||||||||    
T  19176532 ttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggctttt 19176586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 39021327 - 39021273
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttt 55  Q
    |||||||||||| ||||||||||| ||||||| |||||| |||||||||||||||    
T  39021327 ttttgattcgaggtcgggagtcagttctttggatcaagtctggttttgggctttt 39021273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 17550987 - 17551040
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 54  Q
    |||||||||||||||||||||||| |||||| |||||||| | |||||||||||    
T  17550987 ttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggcttt 17551040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 9584104 - 9584013
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt--tttggtgttctttcggtgtaccagaggttgtgaggt 90  Q
    |||||||||||||||||||||||| |||||| |||||| | | |||||||||||  ||| ||| |||||||||| | | ||||||| |||||    
T  9584104 ttttgattcgagatcgggagtcagttctttgtctcaagatggtttttgggcttttgttttgtgatctttcggtggatcggaggttgcgaggt 9584013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 23328401 - 23328303
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt--tttggtgttctttcggtgtaccagaggttgtgaggtggtggaa 97  Q
    ||||||||||||||||||||| |||| ||||||||||||| | ||||| |||||  ||| ||| |||||||||| | | ||||| | ||||| ||||||    
T  23328401 ttttgattcgagatcgggagttagctttttggctcaagttggtttttgagcttttgttttgtgctctttcggtggatcggaggtcgagaggttgtggaa 23328303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 14193970 - 14194027
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaag--tttggttttgggcttttt 56  Q
    |||||||||||||| ||||||| | |||||||||||||  ||||||||||||||||||    
T  14193970 ttttgattcgagattgggagtcggttctttggctcaagtttttggttttgggcttttt 14194027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 20611813 - 20611866
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 54  Q
    |||||||||||||||||||||||| |||||| || ||||| | |||||||||||    
T  20611813 ttttgattcgagatcgggagtcagttctttgacttaagttggtttttgggcttt 20611866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 123
Target Start/End: Complemental strand, 46358428 - 46358315
Alignment:
Q  10 gagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaactgattgatct 109  Q
    ||||| ||||||||  ||||| | | |||||||| |||||||| ||||| ||||||||| ||| |   ||||||| |||||||||||| || ||||||||    
T  46358428 gagatggggagtcacttctttagtttaagtttggctttgggctgttttgatgttctttcagtggattggaggttgagaggtggtggaagcttattgatct 46358329  T
Q  110 ttagaatagtggct 123  Q
    |  ||||| |||||    
T  46358328 tgggaataatggct 46358315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 14879465 - 14879576
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaag-tttggttttgggcttttt-tggtgttctttcggtgtaccagaggttgtgaggtggtggaaa 98  Q
    |||||||||||||||||||||| | || |||| ||||| ||||||||||| |||||| |||| ||||||||||| |   ||||| | ||||||||||||     
T  14879465 ttttgattcgagatcgggagtctgttcgttggatcaagttttggttttggactttttatggt-ttctttcggtggataggaggtcgagaggtggtggaag 14879563  T
Q  99 ctgattgatcttt 111  Q
    || | ||||||||    
T  14879564 cttaatgatcttt 14879576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 40023623 - 40023541
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt--tttggtgttctttcggtgtaccagagg 81  Q
    ||||||||||||||||||||||   ||||||||| ||||| | |||||||||||  ||| ||| |||||||||| | ||||||    
T  40023623 ttttgattcgagatcgggagtcgattctttggcttaagttggtttttgggcttttgttttgtgctctttcggtggatcagagg 40023541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 45398826 - 45398880
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttt 55  Q
    |||||||||||||||| ||||||||||||||  | ||||| | ||||||||||||    
T  45398826 ttttgattcgagatcgagagtcagctctttgatttaagttggtttttgggctttt 45398880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 6588 - 6727
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    ||||||||| |||| || ||| || |||||||||||||||||||||| ||||||||| ||||||||||||||  | |||||||||| || |||||||  |    
T  6588 ttttgattcaagattggtagttagttctttggctcaagtttggtttttggctttttttgtgttctttcggtggtctagaggttgtgtggaggtggaagat 6687  T
Q  101 gattgatctttagaatagtggctcaacttaggcgatgcgg 140  Q
    ||||| |||||||||||||||||||||||||| |||||||    
T  6688 gattggtctttagaatagtggctcaacttaggggatgcgg 6727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 2 - 156
Target Start/End: Original strand, 15906717 - 15906872
Alignment:
Q  2 tttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtg-ttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||  ||| ||| ||||||| ||| ||||||||||  ||||||||||||  |    
T  15906717 tttgattcgagatcgggagtcagttctttggttcaagtttggttttgggctgatttagtgtttctttcagtggaccagaggttaagaggtggtggaagat 15906816  T
Q  101 gattgatctttagaatagtggctcaacttaggcgatgcggacagagtgatttattt 156  Q
    ||||||| | ||||||||| |||||||||||| |||| |||||| ||| |||||||    
T  15906817 gattgatttatagaatagtagctcaacttaggtgatgaggacagtgtgttttattt 15906872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 17720756 - 17720610
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    |||||||||| ||||||||||||| ||||||| |||| || ||||||||||| ||||||||||||||||||| ||  ||||||| ||||||||||||  |    
T  17720756 ttttgattcg-gatcgggagtcagttctttggttcaatttaggttttgggctgttttggtgttctttcggtggacttgaggttgagaggtggtggaagtt 17720658  T
Q  101 gattgatctttagaatagtggctcaacttaggcgatgcggacagagtg 148  Q
    |||||||||||||||||||||||||| ||| | |||| |||| |||||    
T  17720657 gattgatctttagaatagtggctcaaattaagtgatgaggacggagtg 17720610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 30236179 - 30236064
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctt-ttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaac 99  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||| | |||||| ||||||| ||| |  ||||||||| |    
T  30236179 ttttgattcgagatcgggagtcagttctttggttcaagtttggttttgggctttttttggtgttgtatcggtggaccagagattgcgcagtggtggaagc 30236080  T
Q  100 tgattgatctttagaa 115  Q
    ||||||||||||||||    
T  30236079 tgattgatctttagaa 30236064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 17657053 - 17656943
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagaggttgtgaggtggtggaaac 99  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||| ||||||||||| | | ||||| |  ||||||||||| |    
T  17657053 ttttgattcgagatcgggagtcagttctttggctcaagtttggttttggactttttatggt-ttctttcggtggatcggaggtcgataggtggtggaagc 17656955  T
Q  100 tgattgatcttt 111  Q
    ||| ||||||||    
T  17656954 tgaatgatcttt 17656943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 35062487 - 35062600
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    |||||||||||||||| ||||||| ||| | | || |||||||||||||||||||| ||||||| ||||||| | ||||||||| | ||||||||||  |    
T  35062487 ttttgattcgagatcgagagtcagttctcttgttctagtttggttttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggt 35062586  T
Q  101 gattgatctttaga 114  Q
    || |||||||||||    
T  35062587 gaatgatctttaga 35062600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 32945754 - 32945683
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtg 72  Q
    |||||||||||||||||||||||  ||||||  ||||||||||||||||||||||||| |||||||||||||    
T  32945754 ttttgattcgagatcgggagtcaattctttgattcaagtttggttttgggcttttttgatgttctttcggtg 32945683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 41791315 - 41791209
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    |||||||||||||||| ||||||  ||||||| |||||||| ||||||| ||||||||||||| ||||| || || |||||||| | |||||||||| |     
T  41791315 ttttgattcgagatcgagagtcacttctttggttcaagtttagttttggacttttttggtgttatttcgatggactagaggttgcgcggtggtggaagcg 41791216  T
Q  101 gattgat 107  Q
    |||||||    
T  41791215 gattgat 41791209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 10248604 - 10248494
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt-tttggtgttctttcggtgtaccagaggttgtgaggtggtggaaac 99  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||  ||||| | |||| |||||| |||| | | ||||  | |||||||||||| |    
T  10248604 ttttgattcaagatcgggagtcagttctttggctcaagtttggttttttgctttatatggt-ttcttttggtggatcggaggccgcgaggtggtggaagc 10248506  T
Q  100 tgattgatcttt 111  Q
    ||||||||||||    
T  10248505 tgattgatcttt 10248494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 10552298 - 10552410
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    ||||||||| |||||||||||||| ||| ||| || |||||||||||| ||||||| ||||||  ||||| | ||| ||||||| |  ||||||||| ||    
T  10552298 ttttgattctagatcgggagtcagttctctggttctagtttggttttgtgctttttaggtgttacttcgggggacc-gaggttgcgttgtggtggaagct 10552396  T
Q  101 gattgatctttaga 114  Q
    || |||||||||||    
T  10552397 gaatgatctttaga 10552410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 9519529 - 9519582
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 54  Q
    |||||||||||||||||||||||| |||||| |||||||| | |||||||||||    
T  9519529 ttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggcttt 9519582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 15821430 - 15821330
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt--tttggtgttctttcggtgtaccagaggttgtgaggtggtggaaa 98  Q
    ||||||||||||||||||||||||||||||| || | ||| | |||||||||||  ||| ||| |||||| ||| | ||||||| | ||||| |||||||    
T  15821430 ttttgattcgagatcgggagtcagctctttgacttatgttggtttttgggcttttgttttgtgctctttcagtggatcagaggtcgagaggttgtggaaa 15821331  T
Q  99 c 99  Q
    |    
T  15821330 c 15821330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 24995446 - 24995393
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 54  Q
    |||||||||||||||||||||||| |||||| |||||||| | |||||||||||    
T  24995446 ttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggcttt 24995393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 32066346 - 32066256
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt-tttggtgttctttcggtgtaccagaggttgtgaggt 90  Q
    ||||||||||| ||||||||||||||||||| ||| |||| | ||||||||||| | | ||| ||||||||||   ||||||||| |||||    
T  32066346 ttttgattcgaaatcgggagtcagctctttgactccagttggtttttgggctttgtgttgtgctctttcggtggttcagaggttgcgaggt 32066256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 12198105 - 12198064
Alignment:
Q  16 gggagtcagctctttggctcaagtttggttttgggctttttt 57  Q
    ||||||||| ||||||||||||||||||||||| ||||||||    
T  12198105 gggagtcagttctttggctcaagtttggttttgagctttttt 12198064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 12442533 - 12442492
Alignment:
Q  16 gggagtcagctctttggctcaagtttggttttgggctttttt 57  Q
    ||||||||| ||||||||||||||||||||||| ||||||||    
T  12442533 gggagtcagttctttggctcaagtttggttttgagctttttt 12442492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 16457512 - 16457459
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 54  Q
    |||||||||||||||||||||||| |||||| |||||||| | |||| ||||||    
T  16457512 ttttgattcgagatcgggagtcagttctttgactcaagttggtttttaggcttt 16457459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 31207413 - 31207364
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttggg 50  Q
    |||||||||||||||||||||||| |||||| |||||||| | |||||||    
T  31207413 ttttgattcgagatcgggagtcagttctttgactcaagttggattttggg 31207364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 37986909 - 37986856
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 54  Q
    |||||||||||||||||||||||| |||||| |||||||| | ||||| |||||    
T  37986909 ttttgattcgagatcgggagtcagttctttgactcaagttggtttttgtgcttt 37986856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 41893451 - 41893399
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 54  Q
    |||||||||||||||||||||||| |||||| |||||| ||| |||||||||||    
T  41893451 ttttgattcgagatcgggagtcagttctttgtctcaag-ttgtttttgggcttt 41893399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 15906882 - 15906949
Alignment:
Q  151 ttattttgggttgagtagtggcaatgtatggttatggatatcgttttttcagtggtcgtttcttgaagg 219  Q
    |||||||||| |||||||||||||  | |||||||||||| |  |||||||||||||||||| ||||||    
T  15906882 ttattttgggatgagtagtggcaacatgtggttatggata-ctgtttttcagtggtcgtttcgtgaagg 15906949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 36630867 - 36630921
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttt 55  Q
    |||| ||||||||||||| ||||| |||||| ||| |||||| ||||||||||||    
T  36630867 ttttaattcgagatcgggtgtcagttctttgactctagtttgtttttgggctttt 36630921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 34389056 - 34389003
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 54  Q
    |||||||||||||||  ||||||| |||||| |||||||| | |||||||||||    
T  34389056 ttttgattcgagatcaagagtcagttctttgactcaagttggtttttgggcttt 34389003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 140
Target Start/End: Complemental strand, 13098619 - 13098483
Alignment:
Q  4 tgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaactgat 103  Q
    |||||| |||| |||||| || |||||||||||||||||||||| ||||||||| ||||||||||||||  |  ||||||||| || |||||||  ||||    
T  13098619 tgattcaagattgggagttagttctttggctcaagtttggtttttggctttttttgtgttctttcggtggtctggaggttgtgtggaggtggaagatgat 13098520  T
Q  104 tgatctttagaatagtggctcaacttaggcgatgcgg 140  Q
    |||||||||||||||||||||| |||||| |||||||    
T  13098519 tgatctttagaatagtggctcagcttaggggatgcgg 13098483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 9224071 - 9224186
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttt-ttggtgttctttcggtgtaccagaggttgtgaggtggtggaaac 99  Q
    |||||||||||||||||||||||| ||||||| |||  ||||||||||||||||| |||||| |||||||||| ||| ||||||||| |||||||||| |    
T  9224071 ttttgattcgagatcgggagtcagttctttggttcagttttggttttgggcttttattggtgctctttcggtgcaccggaggttgtgcggtggtggaagc 9224170  T
Q  100 tgattgatctttagaa 115  Q
    ||| ||||||||||||    
T  9224171 tgaatgatctttagaa 9224186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 26534770 - 26534652
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctt---tggctcaagtttggttttgggctttttt-ggtgttctttcggtgtaccagaggttgtgaggtggtgga 96  Q
    |||||||||||||| ||||||||| ||||   ||| |||||||||||||||||||||||| ||||||||||||||| |||  |||||||| |||||||||    
T  26534770 ttttgattcgagattgggagtcagttcttctttggttcaagtttggttttgggcttttttaggtgttctttcggtggaccgaaggttgtgcggtggtgga 26534671  T
Q  97 aactgattgatctttagaa 115  Q
    | |||||||||||||||||    
T  26534670 agctgattgatctttagaa 26534652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 26216070 - 26215960
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    |||||||||||||||||||||||| |||| || |||  ||||||||||||||||||||||||||||| |||| ||| ||| ||| | |||||||||| ||    
T  26216070 ttttgattcgagatcgggagtcagttcttcggttcagttttggttttgggcttttttggtgttcttttggtggaccggagattgcgcggtggtggaagct 26215971  T
Q  101 gattgatcttt 111  Q
    |||||||||||    
T  26215970 gattgatcttt 26215960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 33968664 - 33968531
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    |||||||||||||||||||||||| ||||||| |||||||| | ||| || ||||||  |||||||| |  | |||  |||||| ||| |||||||| ||    
T  33968664 ttttgattcgagatcgggagtcagttctttggttcaagttttgattttggatttttt--tgttcttttgacggaccgaaggttgagagatggtggaagct 33968567  T
Q  101 gattgatctttagaatagtggctcaacttaggcgat 136  Q
    ||||||||||||||||||||||||||||| ||||||    
T  33968566 gattgatctttagaatagtggctcaactttggcgat 33968531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 21266143 - 21266257
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    ||||||||||||||||||||| || | | ||| ||||||||||||||||||||| |||||||||||| |||| ||||||| ||||| |||||||||  ||    
T  21266143 ttttgattcgagatcgggagttagttatgtggttcaagtttggttttgggctttgttggtgttcttttggtggaccagagattgtgcggtggtggaggct 21266242  T
Q  101 gattgatctttagaa 115  Q
     ||||||||| ||||    
T  21266243 aattgatcttcagaa 21266257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 32935390 - 32935280
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaact 100  Q
    |||||||||||||||||||||||| |||| | |||||||||| |||||| ||||||| ||||||||||||||   || |||||| |||||||||||| ||    
T  32935390 ttttgattcgagatcgggagtcagttcttggactcaagtttgattttggacttttttagtgttctttcggtggttcaaaggttgggaggtggtggaagct 32935291  T
Q  101 gattgatcttt 111  Q
    |  ||||||||    
T  32935290 gcatgatcttt 32935280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 20701854 - 20701744
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagaggttgtgaggtggtggaaac 99  Q
    ||||||||||||||||||||| || ||||||||| ||||||||||||||||||||| |||| ||||||||||| | | ||||| | ||||| |||||| |    
T  20701854 ttttgattcgagatcgggagttagttctttggcttaagtttggttttgggctttttatggt-ttctttcggtggatcggaggtcgagaggtagtggaagc 20701756  T
Q  100 tgattgatcttt 111  Q
    ||| ||||||||    
T  20701755 tgaatgatcttt 20701744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 13423496 - 13423606
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt-tttggtgttctttcggtgtaccagaggttgtgaggtggtggaaac 99  Q
    |||||||||||||||| ||||| | |||||||||||||||||||| |||||||| | |||| |||||||| || ||| ||||  | |||||||||||| |    
T  13423496 ttttgattcgagatcgagagtcggttctttggctcaagtttggttatgggctttatatggt-ttctttcgatggaccggaggccgcgaggtggtggaagc 13423594  T
Q  100 tgattgatcttt 111  Q
    ||||||||||||    
T  13423595 tgattgatcttt 13423606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 21265016 - 21265111
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtgga 96  Q
    ||||||||||||||||||||| || | | ||| ||||||||||||||||||||| |||||||||||| | || ||| ||| ||||| |||||||||    
T  21265016 ttttgattcgagatcgggagttagttatctggttcaagtttggttttgggctttgttggtgttcttttgatggaccggagattgtgcggtggtgga 21265111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 15120623 - 15120538
Alignment:
Q  26 tctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagaggttgtgaggtggtggaaactgattgatcttt 111  Q
    |||||||||||||||| |||||||||||||| |||| |||||| |||| | | ||||| | |||||||||||| ||| |||||||||    
T  15120623 tctttggctcaagtttagttttgggctttttatggt-ttcttttggtggatcggaggtcgagaggtggtggaagctggttgatcttt 15120538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 3117523 - 3117576
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 54  Q
    ||||||||| |||||||||||||| |||||| |||||||| | |||||||||||    
T  3117523 ttttgattcaagatcgggagtcagttctttgactcaagttggtttttgggcttt 3117576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 131
Target Start/End: Original strand, 15944093 - 15944178
Alignment:
Q  44 ttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaactgattgatctttagaatagtggctcaacttag 131  Q
    ||||||||||||| ||| |||||| |||  |||||||||| |||||||| ||||  || ||||||||  || ||||||||||||||||    
T  15944093 ttttgggctttttaggttttcttttggttgaccagaggttttgaggtggaggaagttgtttgatctt--gagtagtggctcaacttag 15944178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 12794145 - 12794201
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttttt 57  Q
    ||||||||||||||| |||||||| |||| ||  ||||||| ||||| |||||||||    
T  12794145 ttttgattcgagatcaggagtcagttcttgggtccaagtttagtttttggctttttt 12794201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 117
Target Start/End: Complemental strand, 16180873 - 16180837
Alignment:
Q  81 gttgtgaggtggtggaaactgattgatctttagaata 117  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  16180873 gttgtgaggtggtggaagctgattgatctttaaaata 16180837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 19413 - 19523
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagaggttgtgaggtggtggaaac 99  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| | | ||||| | ||| |||||||| |    
T  19413 ttttgattcgagatcggaagtcagttctttggctcaagtttggttttgggctttttatggt-ttctttcggtggatcggaggtcgagagttggtggaagc 19511  T
Q  100 tgattgatcttt 111  Q
    ||| | ||||||    
T  19512 tgaataatcttt 19523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 1068 - 943
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagttt-ggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaac 99  Q
    |||||||||||||||||||||||| ||||||| | |||||| ||||||| | |||||| ||||||| ||| || | | ||| ||  || |||||||||      
T  1068 ttttgattcgagatcgggagtcagttctttggtttaagttttggttttgaggttttttagtgttctctcgatgaatcggagattaagaagtggtggaaga 969  T
Q  100 tgattgatctttagaatagtggctca 125  Q
    ||||||||||||||||||||||||||    
T  968 tgattgatctttagaatagtggctca 943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 42189 - 42134
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt 56  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  42189 ttttgattcgagatcggaagtcagttctttggctcaagtttggttttgggattttt 42134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 36737 - 36835
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaa--gtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaa 97  Q
    |||||||||||||||||||||||| |||||| |||||   ||||||||||| ||||||  |  ||||||||||| | | ||||| | || |||||||||    
T  36737 ttttgattcgagatcgggagtcagttctttgtctcaactttttggttttggtctttttatgatttctttcggtggatcggaggtcgagatgtggtggaa 36835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 58157 - 58228
Alignment:
Q  1 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtg 72  Q
    ||||||||| ||||||| |||||  | ||||| |||||||||||||| |||||||| |||| |||||||||||    
T  58157 ttttgattcaagatcggaagtcaattgtttggatcaagtttggttttaggctttttatggt-ttctttcggtg 58228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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