View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7703_low_44 (Length: 236)
Name: NF7703_low_44
Description: NF7703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7703_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 37157949 - 37157727
Alignment:
| Q |
1 |
aagagaaaaacctctgcttataaagaggccgcatcgtggcatgaaattttcggttcaaacaatcttcagcatcactcataagaacatgaaaagcgtccgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37157949 |
aagagaaaaacctctgcttataaagaggccgcatcgtggcatgaaattttcggttcaaacaatcttcagcatcactcataagaacatgaaaagcgtccgc |
37157850 |
T |
|
| Q |
101 |
tgcacattttcttgccagatgatcccctttatgctcttcattattttcatctaaaccttcaatcaaaggcaaggaactatttctgtctgatattaagcac |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37157849 |
tgcacattttcttgccaaatgatcccctttatgctcttcattattttcatctaaaccttcaatcaaaggcaaggaactatttctgtctgatattaagcac |
37157750 |
T |
|
| Q |
201 |
tctgtaagtatcttagtgatgtc |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
37157749 |
tctgtaagtatcttagtgatgtc |
37157727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 43391078 - 43390864
Alignment:
| Q |
1 |
aagagaaaaacctctgcttataaagaggccgcatcgtggcatgaaattttcggttcaaacaatcttcagcatcactcataagaacatgaaaagcgtccgc |
100 |
Q |
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|||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43391078 |
aagagaaaaacctctgcttatatagaggccgtactgtggcatgaaattttcggttcaaacaatcttcagcatcactcataagaacatgaaaagcttccgt |
43390979 |
T |
|
| Q |
101 |
tgcacattttcttgccagatgatcccctttatgctcttcattattttcatctaaaccttcaatcaaaggcaaggaactat---ttctgtctgatattaag |
197 |
Q |
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|||||||| ||||||||| |||| | ||| |||| |||| |||||||| | | ||||||| ||||||| |||| | | ||||||||||||||||| |
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| T |
43390978 |
ggcacatttccttgccagaggatcacatttctgcttttcagtattttcaagtgagccttcaactaaaggcacggaagtctttcttctgtctgatattaag |
43390879 |
T |
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| Q |
198 |
cactctgtaagtatc |
212 |
Q |
| |
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|||||||||| |||| |
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| T |
43390878 |
cactctgtaaatatc |
43390864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 28908977 - 28908861
Alignment:
| Q |
1 |
aagagaaaaacctctgcttataaagaggccgcatcgtggcatgaaattttcggttcaaacaatcttcagcatcactcataagaacatgaaaagcgtccgc |
100 |
Q |
| |
|
|||||||||||||| ||||||| |||||| | | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28908977 |
aagagaaaaacctcggcttatatagaggctgtactgtggcatgaaattttcagttcaaacaatcttcagcatcactcataagaacatgaaaagcttccgc |
28908878 |
T |
|
| Q |
101 |
tgcacattttcttgcca |
117 |
Q |
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||||||||||||||| |
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| T |
28908877 |
gacacattttcttgcca |
28908861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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