View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7703_low_46 (Length: 220)
Name: NF7703_low_46
Description: NF7703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7703_low_46 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 5 - 220
Target Start/End: Complemental strand, 434822 - 434606
Alignment:
| Q |
5 |
tttaagattaggg-ttttcgttgtcttccaatttcatggatgtcgcccagatttacaaaggtagtttttcgcgtttgcttcagttaattagtgtttttgt |
103 |
Q |
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| T |
434822 |
tttaagattagggattttcgtcgtcttccaatttcatggatgtcgcccagattttcaaaggtagtttttcgcgtttgcttcagttaattagtgtttttgt |
434723 |
T |
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| Q |
104 |
tagaattaaattcgattcatctaagattatggatccaaattcataaattatgcagttagttatacctttgtcattgagtctcaattgacttcgactcatt |
203 |
Q |
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| T |
434722 |
gagaattaaattcgattcatctaagattatggatccaaattcataaattatgcagttagttatacctttgtcattgagtctcaattgacttcgactcatt |
434623 |
T |
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| Q |
204 |
gaatacaagggattcaa |
220 |
Q |
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| T |
434622 |
gaatacaagggattcaa |
434606 |
T |
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Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 17512681 - 17512754
Alignment:
| Q |
28 |
cttccaatttcatggatgtcgcccagatttacaaaggtagtttttcgcgtttgcttcagttaattagtgttttt |
101 |
Q |
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| T |
17512681 |
cttccaatttcatggatgtcgcctagattttcaaatgtagtttttcgcgtttgtttcagttagttattgttttt |
17512754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 107 - 220
Target Start/End: Original strand, 17512780 - 17512893
Alignment:
| Q |
107 |
aattaaattcgattcatctaagattatggatccaaattcataaattatgcagttagttatacctttgtcattgagtctcaattgacttcgactcattgaa |
206 |
Q |
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| T |
17512780 |
aattgaattcaattcatttaagattagggcttcaaattcataaattctacgattagttgtacctttgtcattgagtctcaattgattttaacttattgaa |
17512879 |
T |
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| Q |
207 |
tacaagggattcaa |
220 |
Q |
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| T |
17512880 |
gccaagggattcaa |
17512893 |
T |
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