View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7703_low_48 (Length: 212)

Name: NF7703_low_48
Description: NF7703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7703_low_48
NF7703_low_48
[»] chr7 (3 HSPs)
chr7 (1-88)||(12239579-12239666)
chr7 (1-91)||(23757125-23757215)
chr7 (49-95)||(34091475-34091521)
[»] chr5 (2 HSPs)
chr5 (1-88)||(9851399-9851486)
chr5 (1-88)||(29006559-29006647)
[»] chr6 (2 HSPs)
chr6 (11-81)||(28612111-28612181)
chr6 (1-81)||(11932035-11932115)
[»] chr4 (3 HSPs)
chr4 (5-91)||(48779819-48779905)
chr4 (1-88)||(24391908-24391995)
chr4 (4-81)||(47078000-47078076)
[»] chr3 (3 HSPs)
chr3 (1-88)||(33709903-33709992)
chr3 (1-77)||(52653858-52653935)
chr3 (5-91)||(40574273-40574359)
[»] chr8 (2 HSPs)
chr8 (1-81)||(12729471-12729552)
chr8 (1-88)||(44729151-44729239)
[»] chr1 (3 HSPs)
chr1 (5-81)||(49053874-49053951)
chr1 (6-81)||(49061454-49061530)
chr1 (47-78)||(10917598-10917629)
[»] scaffold0007 (1 HSPs)
scaffold0007 (40-81)||(217830-217871)


Alignment Details
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 12239579 - 12239666
Alignment:
Q  1 aaccggatgcaaaagggtatatcggcgaatccccttccaaatacgatggaatccttgacgtgacttgcacattcacaccaatcgtatc 88  Q
    |||||||||||||||||||| ||||||||||||||||   |||||||| |||||||||||||||||||||||||||||||| ||||||    
T  12239579 aaccggatgcaaaagggtatgtcggcgaatccccttcaggatacgatgaaatccttgacgtgacttgcacattcacaccaagcgtatc 12239666  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 23757125 - 23757215
Alignment:
Q  1 aaccggatgcaaaagggtatatcggcgaatccccttccaaatacgatggaatccttgacgtgacttgcacattcacaccaatcgtatcaat 91  Q
    |||| ||||||||||||||||  |||||||||||||| | |||  |||| | |||||||||||| | |||||||||||||| |||||||||    
T  23757125 aaccagatgcaaaagggtatactggcgaatccccttcaagataatatgggacccttgacgtgacattcacattcacaccaaacgtatcaat 23757215  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 34091475 - 34091521
Alignment:
Q  49 gaatccttgacgtgacttgcacattcacaccaatcgtatcaattaat 95  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  34091475 gaatccttgacgtgacttgcacattcacaccaatcgtatgaattaat 34091521  T

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Target: chr5 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 9851399 - 9851486
Alignment:
Q  1 aaccggatgcaaaagggtatatcggcgaatccccttccaaatacgatggaatccttgacgtgacttgcacattcacaccaatcgtatc 88  Q
    ||||| ||||||||||||||| ||||||||||||||| | |||||||||||| ||| | |||| ||||||||||||||||| ||||||    
T  9851399 aaccgaatgcaaaagggtataccggcgaatccccttcaagatacgatggaatacttaatgtgatttgcacattcacaccaagcgtatc 9851486  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 29006647 - 29006559
Alignment:
Q  1 aaccggatgcaaaagggt-atatcggcgaatccccttccaaatacgatggaatccttgacgtgacttgcacattcacaccaatcgtatc 88  Q
    |||| ||||||||||||| |||| ||||||||| ||||  ||||| |||||||||||||| |||| | |||||||||||||| ||||||    
T  29006647 aaccagatgcaaaagggttatattggcgaatcctcttcagaatacaatggaatccttgacatgacatacacattcacaccaagcgtatc 29006559  T

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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 28612111 - 28612181
Alignment:
Q  11 aaaagggtatatcggcgaatccccttccaaatacgatggaatccttgacgtgacttgcacattcacaccaa 81  Q
    |||| ||||||||||||||||||||||  ||||| |||||||||||||||||||||| |||||||||||||    
T  28612111 aaaatggtatatcggcgaatccccttcagaatacaatggaatccttgacgtgacttgtacattcacaccaa 28612181  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 11932115 - 11932035
Alignment:
Q  1 aaccggatgcaaaagggt-atatcggcgaatccccttccaaatacgatggaatccttgacgtgacttgcacattcacaccaa 81  Q
    |||||||||||||||||| ||| | ||||| |||||||   |||||||| ||||||||| |||||||||  |||||||||||    
T  11932115 aaccggatgcaaaagggttataccagcgaa-ccccttcaggatacgatgaaatccttgatgtgacttgcttattcacaccaa 11932035  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 48779819 - 48779905
Alignment:
Q  5 ggatgcaaaagggtatatcggcgaatccccttccaaatacgatggaatccttgacgtgacttgcacattcacaccaatcgtatcaat 91  Q
    ||||||||||||||||||||| |||||||||||   |||| ||| |||| ||||||||||||||||||||||||||| | |||||||    
T  48779819 ggatgcaaaagggtatatcggtgaatccccttcaggatactatgaaatcattgacgtgacttgcacattcacaccaagcatatcaat 48779905  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 24391995 - 24391908
Alignment:
Q  1 aaccggatgcaaaagggt-atatcggcgaatccccttccaaatacgatggaatccttgacgtgacttgcacattcacaccaatcgtatc 88  Q
    |||||||||||||||||| ||| ||||||||||||||| | |||| ||||||||||||  |||||||||||| ||||||||| ||||||    
T  24391995 aaccggatgcaaaagggttataccggcgaatccccttcaagatacaatggaatccttggtgtgacttgcaca-tcacaccaaacgtatc 24391908  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 47078000 - 47078076
Alignment:
Q  4 cggatgcaaaagggtatatcggcgaatccccttccaaatacgatggaatccttgacgtgacttgcacattcacaccaa 81  Q
    ||||||||||||||||| | | | |||||||||    |||| ||||||||||||||||||||| |||||| |||||||    
T  47078000 cggatgcaaaagggtattt-gacaaatcccctttaggataccatggaatccttgacgtgacttacacatttacaccaa 47078076  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 33709992 - 33709903
Alignment:
Q  1 aaccggatgcaaaagggtatat--cggcgaatccccttccaaatacgatggaatccttgacgtgacttgcacattcacaccaatcgtatc 88  Q
    ||||||||||||||||||||||  |||| |||||||||    ||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  33709992 aaccggatgcaaaagggtatataccggctaatcccctttaggatacgatagaatccttgacgtgacttgcacattcacaccaagcgtatc 33709903  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 52653935 - 52653858
Alignment:
Q  1 aaccggatgcaaaagggt-atatcggcgaatccccttccaaatacgatggaatccttgacgtgacttgcacattcaca 77  Q
    |||||||||||||| ||| ||| |||||||||||||||   |||| ||||||||||||||||||||||||||||||||    
T  52653935 aaccggatgcaaaatggttataccggcgaatccccttcaggatacaatggaatccttgacgtgacttgcacattcaca 52653858  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 40574273 - 40574359
Alignment:
Q  5 ggatgcaaaagggtatatcggcgaatccccttccaaatacgatggaatccttgacgtgacttgcacattcacaccaatcgtatcaat 91  Q
    |||||||||| || ||||| ||||||  |||||   |||| |||||||| |||||||||||||||||||||||| || |||||||||    
T  40574273 ggatgcaaaatggcatatcagcgaattaccttcaggatactatggaatctttgacgtgacttgcacattcacacgaagcgtatcaat 40574359  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 12729552 - 12729471
Alignment:
Q  1 aaccggatgcaaaagggt-atatcggcgaatccccttccaaatacgatggaatccttgacgtgacttgcacattcacaccaa 81  Q
    |||||||||||||||||| ||| |||||| ||||||||   |||||||| |||||||||| |||||||||||||||||||||    
T  12729552 aaccggatgcaaaagggttataccggcgattccccttcaggatacgatgaaatccttgacatgacttgcacattcacaccaa 12729471  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 44729239 - 44729151
Alignment:
Q  1 aaccggatgcaaaagggta-tatcggcgaatccccttccaaatacgatggaatccttgacgtgacttgcacattcacaccaatcgtatc 88  Q
    |||||||||||| |||||| || ||||||||||||||    ||||  ||||||||||||||||||||||||||||| ||||| ||||||    
T  44729239 aaccggatgcaagagggtaataccggcgaatcccctttaggatacattggaatccttgacgtgacttgcacattcataccaagcgtatc 44729151  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 49053951 - 49053874
Alignment:
Q  5 ggatgcaaaagggt-atatcggcgaatccccttccaaatacgatggaatccttgacgtgacttgcacattcacaccaa 81  Q
    |||||||||||||| ||| |||||||||||||||   |||| ||| ||||||||||||||||||||||||||||||||    
T  49053951 ggatgcaaaagggttataccggcgaatccccttcaggatacaatgaaatccttgacgtgacttgcacattcacaccaa 49053874  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 49061530 - 49061454
Alignment:
Q  6 gatgcaaaagggt-atatcggcgaatccccttccaaatacgatggaatccttgacgtgacttgcacattcacaccaa 81  Q
    ||||||||||||| ||| || ||||||||||||  ||||| |||||||||||||||||| |||||||||||||||||    
T  49061530 gatgcaaaagggttataccgacgaatccccttcagaatacaatggaatccttgacgtgatttgcacattcacaccaa 49061454  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 78
Target Start/End: Complemental strand, 10917629 - 10917598
Alignment:
Q  47 tggaatccttgacgtgacttgcacattcacac 78  Q
    ||||||||||||||||||||||||||||||||    
T  10917629 tggaatccttgacgtgacttgcacattcacac 10917598  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 217871 - 217830
Alignment:
Q  40 aatacgatggaatccttgacgtgacttgcacattcacaccaa 81  Q
    ||||||||| ||||||||| | ||||||||||||||||||||    
T  217871 aatacgatgaaatccttgaagagacttgcacattcacaccaa 217830  T

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