View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7703_low_50 (Length: 204)
Name: NF7703_low_50
Description: NF7703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7703_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 2e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 43015151 - 43015324
Alignment:
| Q |
16 |
cctgtgtgtattggaattggattgtaaaatggtggttgatgatg---ttaacaaagataaatcaaatcacttagtgtacgatgtgatcttgcaagattgt |
112 |
Q |
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| T |
43015151 |
cctgtgtgtattggaattggattgtaaaatggttgttgatgatgatgttaacaaagataaatcaaatcacttagagtacggtgtgatcttgca-gattgt |
43015249 |
T |
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| Q |
113 |
aaaactctcctcgtgaatcacaacaattacaaagttgtgttcagtaaacgtcaagcaaacgatagcactcatgct |
187 |
Q |
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| T |
43015250 |
aaaactctcctcgtgaatcacaacaattacaaagttgtgtttagtaaacgtcaagcaaacgataacactcatgct |
43015324 |
T |
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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 171
Target Start/End: Complemental strand, 22944473 - 22944396
Alignment:
| Q |
94 |
tgtgatcttgcaagattgtaaaactctcctcgtgaatcacaacaattacaaagttgtgttcagtaaacgtcaagcaaa |
171 |
Q |
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| T |
22944473 |
tgtgatcttgcaagattacaaaactctcctctcacgtcacaataattacaaaattgtgtttaccaaacgtcaagcaaa |
22944396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 41 - 153
Target Start/End: Complemental strand, 36488053 - 36487941
Alignment:
| Q |
41 |
aaaatggtggttgatgatgttaacaaagataaatcaaatcacttagtgtacgatgtgatcttgcaagattgtaaaactctcctcgtgaatcacaacaatt |
140 |
Q |
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| T |
36488053 |
aaaatggtggttgatgataataacaaaaataaattaaatcactcaaagtacggtatgatcttccaagattgtaaaattattctcatgaatcacaacaggt |
36487954 |
T |
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| Q |
141 |
acaaagttgtgtt |
153 |
Q |
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| T |
36487953 |
acaaagttgtgtt |
36487941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 152
Target Start/End: Original strand, 52141963 - 52142087
Alignment:
| Q |
24 |
tattggaattggattgtaaaatggtggttgatgatgttaacaaagataaatcaaatcacttagtgtacgatgtgatcttgcaagattgtaaaactctcct |
123 |
Q |
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|||||||| ||||||||||| || ||| |||||| |||||||| || | |||||||| || |||| ||| |||||| ||||||||||||||| | | |
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| T |
52141963 |
tattggaaatggattgtaaattg----ttgttgatgtcaacaaagacaacttaaatcactcagagtacaatgcgatcttacaagattgtaaaactgtatt |
52142058 |
T |
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| Q |
124 |
cgtgaatcacaacaattacaaagttgtgt |
152 |
Q |
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| T |
52142059 |
cacgaatcacaacactaacagagttgtgt |
52142087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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