View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7703_low_51 (Length: 201)
Name: NF7703_low_51
Description: NF7703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7703_low_51 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 12 - 184
Target Start/End: Original strand, 37430733 - 37430905
Alignment:
| Q |
12 |
tggtgttctggtttgacaaatcttaatgctttacctatacagtgtttaattcgttaatagaacaattcctatgatcacaatttccaaattaatcttgttt |
111 |
Q |
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| T |
37430733 |
tggtgttctggtttgacaaatcttaatgctttacctatacagtgtttaattcgttaatagaataattcctatgatcacaatttccaaattaatcttgttt |
37430832 |
T |
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| Q |
112 |
cgtgtataaattaagacatttacattcacattccatatttgttactgataaatttatgctgcatgctaaattt |
184 |
Q |
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| T |
37430833 |
cgtgtataaattaagacatttacattcacattccatatttgttactgataaatttatgctgcatgctaaattt |
37430905 |
T |
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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 41265808 - 41265762
Alignment:
| Q |
97 |
aaattaatcttgtttcgtgtataaattaagacatttacattcacatt |
143 |
Q |
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|||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
41265808 |
aaattaatcttgttccgtgtataaattaagacatatacattcacatt |
41265762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 34261026 - 34260975
Alignment:
| Q |
97 |
aaattaatcttgtttcgtgtataaattaagacatttacattcacattccata |
148 |
Q |
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||||||||||||| ||||||||||||||||||| |||||||||||| |||| |
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| T |
34261026 |
aaattaatcttgtcccgtgtataaattaagacatatacattcacatttcata |
34260975 |
T |
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