View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7703_low_6 (Length: 572)
Name: NF7703_low_6
Description: NF7703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7703_low_6 |
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| [»] scaffold0334 (1 HSPs) |
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Alignment Details
Target: scaffold0334 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: scaffold0334
Description:
Target: scaffold0334; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 1 - 563
Target Start/End: Complemental strand, 16928 - 16366
Alignment:
| Q |
1 |
tcacattccggactctatnnnnnnnctactcagacatagctaaattataatctaaatttaactctaatgaactcatattaaaggtaaaaggaaaagaaac |
100 |
Q |
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| T |
16928 |
tcacattccggactctataaaaaaactactcaaacatagctaaattataatctaaatttaactctaatgaactcatattaaaggtaaaaggaaaagaaac |
16829 |
T |
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| Q |
101 |
gaaacctgttatagttggagtctttaattgagtacaatttccactgctatgaagaaaactctaccaatatgctttaaaacaaccaagtcacgacaatggg |
200 |
Q |
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| T |
16828 |
gaaacctgttatagttggagtctttaattgagtacaatttccactgctatgaagaaaactctaccaatatgctttaaaacaaccaagtcacgacaatggg |
16729 |
T |
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| Q |
201 |
cataatactccaagaaacataactgcaattggaatcgaacaccaaacaccaaacaatagcgcaaacaatgaaaatatatggattatatggcacacgtact |
300 |
Q |
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| T |
16728 |
cataatactccaagaaacataactgcaattggaatcgaacaccaaacaccaaacagtagcgcaaacaatgaaaatatatggattatatggcacacgtact |
16629 |
T |
|
| Q |
301 |
cagcaataacaattgttatatgctcagccccgcaacaatggaacagccaacaacaacaattcaatttaattaaataaaagaaagaaaagggacgtagcag |
400 |
Q |
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|| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16628 |
caacaataacaattgttatatgctcagtcccgcaacaatggaacagccaacaacaacaattcaatttaattaaataaaagaaagaaaagggacgtagcag |
16529 |
T |
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| Q |
401 |
cagttttgaaaataaagggaatttggattggtaagtgctgcaaaataaaatcgggttgagtaataatgtgcagcgatataatataagaagtaataacaat |
500 |
Q |
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| T |
16528 |
caactttgaaaataaagggaatttggattggtaagtgctgcaaaataaaatcgggttgagtaataatgtgcagcgatataatataataagtaataacaat |
16429 |
T |
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| Q |
501 |
tggaattgaataggaaagtaataagaaattggattgctgaacgaaaatagaacacaggttctg |
563 |
Q |
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| T |
16428 |
tggaattgaataggaaagtaataagaaattggattgctgaacgaaaatagaacacaggttctg |
16366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 211 - 563
Target Start/End: Original strand, 11177266 - 11177600
Alignment:
| Q |
211 |
caagaaacataactgcaattggaatcgaacaccaaacaccaaacaatagcgcaaacaatgaaaatatatggattatatggcacacgtactcagcaataac |
310 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11177266 |
caagaaacataactgcaattgaaatcgaacaccaaacaccaaacagtagcgcaaacaatgaaaatatatggattatatggcacacgtactcagcaataac |
11177365 |
T |
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| Q |
311 |
aattgttatatgctcagccccgcaacaatggaacagccaacaacaacaattcaatttaattaaataaaagaaagaaaagggacgtagcagcagttttgaa |
410 |
Q |
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| T |
11177366 |
aattgttatatactcagcccagcaac------------------aacaattcaatttaattaaataaaagaaagaaaagggacgtagcagcagctttgaa |
11177447 |
T |
|
| Q |
411 |
aataaagggaatttggattggtaagtgctgcaaaataaaatcgggttgagtaataatgtgcagcgatataatataagaagtaataacaattggaattgaa |
510 |
Q |
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| T |
11177448 |
aataaagggaatttggattggtaagtgctgcaaaataaaatcgggttgagtaataatgtgcagcgatataatataataagtaataacaattggaattgag |
11177547 |
T |
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| Q |
511 |
taggaaagtaataagaaattggattgctgaacgaaaatagaacacaggttctg |
563 |
Q |
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| T |
11177548 |
taagaaagtaataagaaattggattgctgaacgaaaatagaacacaggttctg |
11177600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 26 - 137
Target Start/End: Original strand, 11177157 - 11177268
Alignment:
| Q |
26 |
ctactcagacatagctaaattataatctaaatttaactctaatgaactcatattaaaggtaaaaggaaaagaaacgaaacctgttatagttggagtcttt |
125 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11177157 |
ctactcagacataactaaattataatctaaatttaactctaatgaactcatattaaaggtaaaaggaaaagaaacgaaacctgttatagttgtagtcttt |
11177256 |
T |
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| Q |
126 |
aattgagtacaa |
137 |
Q |
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|||||||||||| |
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| T |
11177257 |
aattgagtacaa |
11177268 |
T |
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Back To:
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