View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7703_low_8 (Length: 494)

Name: NF7703_low_8
Description: NF7703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7703_low_8
NF7703_low_8
[»] chr4 (6 HSPs)
chr4 (3-479)||(39336898-39337374)
chr4 (53-188)||(35785838-35785973)
chr4 (55-188)||(55018560-55018693)
chr4 (55-188)||(38157823-38157956)
chr4 (62-188)||(23703163-23703289)
chr4 (53-177)||(7107710-7107834)
[»] chr8 (1 HSPs)
chr8 (53-187)||(21143275-21143409)
[»] chr1 (3 HSPs)
chr1 (53-188)||(52794436-52794570)
chr1 (79-188)||(9627130-9627237)
chr1 (51-163)||(48850988-48851100)
[»] chr5 (3 HSPs)
chr5 (53-188)||(13374493-13374628)
chr5 (53-104)||(9671540-9671591)
chr5 (130-188)||(9671599-9671657)
[»] scaffold0060 (1 HSPs)
scaffold0060 (68-188)||(12587-12707)
[»] chr3 (1 HSPs)
chr3 (52-151)||(47151152-47151251)
[»] chr2 (1 HSPs)
chr2 (134-188)||(42929731-42929785)


Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 3 - 479
Target Start/End: Complemental strand, 39337374 - 39336898
Alignment:
Q  3 aaaaaacaaaactttatggcatttcaacgaacacatagactacttgattaacatacttgaaaatccaaaagaagtggcacatgggtttcttccattttag 102  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39337374 aaaaaaaaaaactttatggcatttcaacaaacacatagactacttgattaacatacttgaaaatccaaaagaagtggcacatgggtttcttccattttag 39337275  T
Q  103 cagcaagagacaaacaagcaacagcagtaagctgagtcatccaaggcttatccttttgaaacttcaaactagtaacgaatctatcaaagtagttaacagc 202  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39337274 cagcaagagacaaacaagcaacagcagtgagctgagtcatccaaggcttatccttttgaaacttcaaactagtaacgaatctatcaaagtagttgacagc 39337175  T
Q  203 aagaacagtggtcaaagtagaaaacccataatgagcacaaactctagaaacccaattgacaccttcaacacgagactcattcaaagatccatcaataaca 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39337174 aagaacagtggtcaaagtagaaaacccataatgagcacaaactctagaaacccaattgacaccttcaacacgagactcattcaaagatccatcaataaca 39337075  T
Q  303 aaatcatcattaatcaaatgggtttctttctctttcatgattaacgaaagaacttcatcgtcttcccaaaacatatcattgttgaacaaaatcgataaag 402  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39337074 aaatcatcattaatcaaatgggtttctttctctttcatgattaaagaaagaacttcatcgtcttcccaaaacatatcattgttgaacaaaatcgataaag 39336975  T
Q  403 attgaagctttgtagcagatgggtcgttggtaattgtttctgaatcggtgagggattcatcttcgaaggtgtttggt 479  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39336974 attgaagctttgtagcagatgggtcgttggtaatggtttctgaatcggtgagggattcatcttcgaaggtgtttggt 39336898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 53 - 188
Target Start/End: Original strand, 35785838 - 35785973
Alignment:
Q  53 acatacttgaaaatccaaaagaagtggcacatgggtttcttccattttagcagcaagagacaaacaagcaacagcagtaagctgagtcatccaaggctta 152  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||| ||||||    
T  35785838 acatacttgaaaatccaaaagaagtggcacatggatttcttccattttagcagcaagagacaaacaagcaacaacagtaatctgagtgatccatggctta 35785937  T
Q  153 tccttttgaaacttcaaactagtaacgaatctatca 188  Q
    |||||||||||  |||||||||||||||||||||||    
T  35785938 tccttttgaaatatcaaactagtaacgaatctatca 35785973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 55 - 188
Target Start/End: Complemental strand, 55018693 - 55018560
Alignment:
Q  55 atacttgaaaatccaaaagaagtggcacatgggtttcttccattttagcagcaagagacaaacaagcaacagcagtaagctgagtcatccaaggcttatc 154  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||    
T  55018693 atacttgaaaatccaaaagaagtggtacatgggtttcttccattttagcagcaagagacaaacaagcaacaacagtaagctgagtgatccatggcttatc 55018594  T
Q  155 cttttgaaacttcaaactagtaacgaatctatca 188  Q
    |||||||||  |||||||| ||||||||||||||    
T  55018593 cttttgaaatatcaaactaataacgaatctatca 55018560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 55 - 188
Target Start/End: Complemental strand, 38157956 - 38157823
Alignment:
Q  55 atacttgaaaatccaaaagaagtggcacatgggtttcttccattttagcagcaagagacaaacaagcaacagcagtaagctgagtcatccaaggcttatc 154  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| | ||||||    
T  38157956 atacttgaaaatccaaaagaagtggtacatgggtttcttccattttagcagcaagagacaaacaagcaacaacagtaagatgagtgatccatgacttatc 38157857  T
Q  155 cttttgaaacttcaaactagtaacgaatctatca 188  Q
    |||||||||  |||||||||||||||||||||||    
T  38157856 cttttgaaatatcaaactagtaacgaatctatca 38157823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 62 - 188
Target Start/End: Complemental strand, 23703289 - 23703163
Alignment:
Q  62 aaaatccaaaagaagtggcacatgggtttcttccattttagcagcaagagacaaacaagcaacagcagtaagctgagtcatccaaggcttatccttttga 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||| |||||||    
T  23703289 aaaatccaaaagaagtggcacatgggtttcttccattttagcagcaagagacaaacaagcaacagcagtaacctgagtgatccatggcttattcttttga 23703190  T
Q  162 aacttcaaactagtaacgaatctatca 188  Q
    ||  ||||||||||||| |||||||||    
T  23703189 aatatcaaactagtaacaaatctatca 23703163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 53 - 177
Target Start/End: Complemental strand, 7107834 - 7107710
Alignment:
Q  53 acatacttgaaaatccaaaagaagtggcacatgggtttcttccattttagcagcaagagacaaacaagcaacagcagtaagctgagtcatccaaggctta 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| | ||||| | ||||    
T  7107834 acatacttgaaaatccaaaagaagtggcacatgggtttcttccattttagcagcaagagacaaacaagcaacaacagtaatctgaatgatccatgactta 7107735  T
Q  153 tccttttgaaacttcaaactagtaa 177  Q
    |||||||||||  ||||||||||||    
T  7107734 tccttttgaaatatcaaactagtaa 7107710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 53 - 187
Target Start/End: Complemental strand, 21143409 - 21143275
Alignment:
Q  53 acatacttgaaaatccaaaagaagtggcacatgggtttcttccattttagcagcaagagacaaacaagcaacagcagtaagctgagtcatccaaggctta 152  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||| ||||||    
T  21143409 acatacttgaaaatccaaaagaagtggcacatgagtttcttccattttagcagcaagagacaaacaagcaacaacagtaatctgagtgatccatggctta 21143310  T
Q  153 tccttttgaaacttcaaactagtaacgaatctatc 187  Q
    |||||||||||  ||||||||||||| ||||||||    
T  21143309 tccttttgaaatatcaaactagtaacaaatctatc 21143275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 7e-47; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 53 - 188
Target Start/End: Original strand, 52794436 - 52794570
Alignment:
Q  53 acatacttgaaaatccaaaagaagtggcacatgggtttcttccattttagcagcaagagacaaacaagcaacagcagtaagctgagtcatccaaggctta 152  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| || |||||| ||||| ||||||    
T  52794436 acatatttgaaaatccaaaagaagtggcacatgggtttcttccattttagcagcaagagacaaacaagaaaca-caggaatctgagtgatccatggctta 52794534  T
Q  153 tccttttgaaacttcaaactagtaacgaatctatca 188  Q
    |||||||||||  |||||||||||||||||||||||    
T  52794535 tccttttgaaatatcaaactagtaacgaatctatca 52794570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 79 - 188
Target Start/End: Complemental strand, 9627237 - 9627130
Alignment:
Q  79 gcacatgggtttcttccattttagcagcaagagacaaacaagcaacagcagtaagctgagtcatccaaggcttatccttttgaaacttcaaactagtaac 178  Q
    |||||||||||||| ||||||||||||||||||||||| ||| |||| | ||||  ||||| || || |||||||||||||||||  |||||||||||||    
T  9627237 gcacatgggtttct-ccattttagcagcaagagacaaataagaaaca-cggtaatatgagtgattcatggcttatccttttgaaatatcaaactagtaac 9627140  T
Q  179 gaatctatca 188  Q
    ||||||||||    
T  9627139 gaatctatca 9627130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 163
Target Start/End: Original strand, 48850988 - 48851100
Alignment:
Q  51 taacatacttgaaaatccaaaagaagtggcacatgggtttcttccattttagcagcaagagacaaacaagcaacagcagtaagctgagtcatccaaggct 150  Q
    |||||||||||||  || || ||||| || || || |||||||| | ||||||||| | ||| |  |||| |||||||  ||||||| ||||||| ||||    
T  48850988 taacatacttgaaggtctaagagaagaggaacttgagtttcttcaactttagcagctaaagagatgcaagtaacagcaacaagctgaatcatccatggct 48851087  T
Q  151 tatccttttgaaa 163  Q
    | |||||||||||    
T  48851088 tctccttttgaaa 48851100  T

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Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 53 - 188
Target Start/End: Original strand, 13374493 - 13374628
Alignment:
Q  53 acatacttgaaaatccaaaagaagtggcacatgggtttcttccattttagcagcaagagacaaacaagcaacagcagtaagctgagtcatccaaggctta 152  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||| |||||| |||||| ||||| | || |    
T  13374493 acatacttgaaaatccaaaagaagtgacacatgtgtttcttccattttagtagcaagagacaaacaagcaacaacagtaatctgagtgatccatgactca 13374592  T
Q  153 tccttttgaaacttcaaactagtaacgaatctatca 188  Q
    |||||||||||  |||||||||||||||||||||||    
T  13374593 tccttttgaaatatcaaactagtaacgaatctatca 13374628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 9671540 - 9671591
Alignment:
Q  53 acatacttgaaaatccaaaagaagtggcacatgggtttcttccattttagca 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9671540 acatacttgaaaatccaaaagaagtggcacatgggtttcttccattttagca 9671591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 9671599 - 9671657
Alignment:
Q  130 taagctgagtcatccaaggcttatccttttgaaacttcaaactagtaacgaatctatca 188  Q
    ||| |||||| ||||| |||||||||||||||||  ||||||||||||||||| |||||    
T  9671599 taatctgagtgatccatggcttatccttttgaaatatcaaactagtaacgaatatatca 9671657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 68 - 188
Target Start/End: Complemental strand, 12707 - 12587
Alignment:
Q  68 caaaagaagtggcacatgggtttcttccattttagcagcaagagacaaacaagcaacagcagtaagctgagtcatccaaggcttatccttttgaaacttc 167  Q
    |||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||  |||||  ||||| ||||| | |||||||||||||||  ||    
T  12707 caaaagaagtggcacatgagtttcttccattttagtagcaacagacaaacaagcaacaatagtaatttgagtgatccatgacttatccttttgaaatatc 12608  T
Q  168 aaactagtaacgaatctatca 188  Q
    |||||||||||||||||||||    
T  12607 aaactagtaacgaatctatca 12587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 52 - 151
Target Start/End: Complemental strand, 47151251 - 47151152
Alignment:
Q  52 aacatacttgaaaatccaaaagaagtggcacatgggtttcttccattttagcagcaagagacaaacaagcaacagcagtaagctgagtcatccaaggctt 151  Q
    |||||||||||| ||| |  | ||| || |||||||| ||||||||||||||||||||||| | |||||||||||| | ||||||||||||||| |||||    
T  47151251 aacatacttgaagatctagcaaaagaggaacatgggtctcttccattttagcagcaagagaaagacaagcaacagctgcaagctgagtcatccatggctt 47151152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 42929785 - 42929731
Alignment:
Q  134 ctgagtcatccaaggcttatccttttgaaacttcaaactagtaacgaatctatca 188  Q
    |||||| ||||| |||||||||||||||||  |  ||||||||||||||||||||    
T  42929785 ctgagtgatccatggcttatccttttgaaatatataactagtaacgaatctatca 42929731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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