View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7704_high_16 (Length: 298)

Name: NF7704_high_16
Description: NF7704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7704_high_16
NF7704_high_16
[»] chr7 (3 HSPs)
chr7 (169-281)||(22972886-22973000)
chr7 (63-103)||(22973066-22973106)
chr7 (16-44)||(22976347-22976375)
[»] chr8 (11 HSPs)
chr8 (169-281)||(12585657-12585771)
chr8 (169-282)||(26571617-26571736)
chr8 (187-276)||(2537183-2537274)
chr8 (177-236)||(26647930-26647989)
chr8 (63-103)||(12585551-12585591)
chr8 (204-273)||(42164050-42164121)
chr8 (169-273)||(40381606-40381712)
chr8 (191-271)||(36974206-36974288)
chr8 (204-269)||(16340254-16340319)
chr8 (204-274)||(37728440-37728512)
chr8 (16-44)||(12585504-12585532)
[»] chr6 (4 HSPs)
chr6 (169-282)||(6901574-6901695)
chr6 (63-103)||(6901761-6901801)
chr6 (191-236)||(7644774-7644819)
chr6 (204-273)||(6822574-6822645)
[»] chr3 (10 HSPs)
chr3 (186-281)||(49600711-49600808)
chr3 (183-280)||(44111228-44111326)
chr3 (188-272)||(34962258-34962345)
chr3 (183-280)||(10321273-10321374)
chr3 (204-274)||(1902166-1902238)
chr3 (204-274)||(1911612-1911684)
chr3 (169-237)||(52259759-52259827)
chr3 (169-236)||(54393337-54393404)
chr3 (16-44)||(49600540-49600568)
chr3 (63-103)||(49600587-49600626)
[»] chr2 (5 HSPs)
chr2 (188-281)||(22318521-22318613)
chr2 (187-276)||(7813552-7813641)
chr2 (191-279)||(31781011-31781099)
chr2 (177-276)||(21490270-21490369)
chr2 (205-237)||(42071433-42071465)
[»] chr4 (7 HSPs)
chr4 (177-279)||(6495737-6495841)
chr4 (187-276)||(27907245-27907334)
chr4 (213-261)||(50977860-50977910)
chr4 (199-274)||(46732648-46732724)
chr4 (245-282)||(1112105-1112142)
chr4 (205-237)||(24368060-24368092)
chr4 (204-236)||(47552075-47552107)
[»] chr5 (6 HSPs)
chr5 (177-236)||(10710987-10711046)
chr5 (210-277)||(18108288-18108357)
chr5 (204-255)||(27343160-27343211)
chr5 (169-236)||(3294213-3294279)
chr5 (188-271)||(17832169-17832254)
chr5 (172-241)||(14811437-14811505)
[»] chr1 (1 HSPs)
chr1 (204-258)||(29095846-29095902)


Alignment Details
Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 169 - 281
Target Start/End: Complemental strand, 22973000 - 22972886
Alignment:
Q  169 ttgtcctctacgacttgtcatattttagaaatatcgaatgattttctcattttcaatctcaataaaaatct--ctctatatataagtaactagacaatca 266  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  22973000 ttgtcctctacgacttgtcatattttggaaatatcgaatgattttctcattttcaatctcaataaaaatctctctctatatataagtaactagacaatca 22972901  T
Q  267 tttaaccattgatca 281  Q
    |||||||||||||||    
T  22972900 tttaaccattgatca 22972886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 22973106 - 22973066
Alignment:
Q  63 cctgcaatatagagtaggaaaagagcacccctgcctaagct 103  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  22973106 cctgcaatatatagtaggaaaagagcacccctgcctaagct 22973066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 22976375 - 22976347
Alignment:
Q  16 atagcaggaaaacacaacagcactgcagc 44  Q
    |||||||||||||||||||||||||||||    
T  22976375 atagcaggaaaacacaacagcactgcagc 22976347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 4e-47; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 169 - 281
Target Start/End: Original strand, 12585657 - 12585771
Alignment:
Q  169 ttgtcctctacgacttgtcatattttagaaatatcgaatgattttctcattttcaatctcaataaaaa--tctctctatatataagtaactagacaatca 266  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||    
T  12585657 ttgtcctctacgacttgtcatattttggaaatatcgaatgattttctcattttcaatctcaataaaaatctctctctctatataagtaactagacaatca 12585756  T
Q  267 tttaaccattgatca 281  Q
    |||||||||||||||    
T  12585757 tttaaccattgatca 12585771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 169 - 282
Target Start/End: Original strand, 26571617 - 26571736
Alignment:
Q  169 ttgtcctctacgacttgtcatattttagaaa-tatcgaatgattttctcattttcaatctcaataaaaa----tctctctatatataagtaactagacaa 263  Q
    ||||||| ||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||    ||||| |||||||||||||||||||||    
T  26571617 ttgtcctatacgacttgtcatttttttgaaaatatcgaatgattttctcattttcaatctcaataaaaacctctctctatatatataagtaactagacaa 26571716  T
Q  264 tcattt-aaccattgatcat 282  Q
    |||||| |||||||||||||    
T  26571717 tcatttaaaccattgatcat 26571736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 276
Target Start/End: Original strand, 2537183 - 2537274
Alignment:
Q  187 catattttagaaatatcgaatgattttctcattttcaatctcaataaaa--atctctctatatataagtaactagacaatcatttaaccatt 276  Q
    ||||||||||| | || ||||||||||||||||||||||  ||| ||||  |||||||| |||||||||||||| ||||| |||||||||||    
T  2537183 catattttagatacattgaatgattttctcattttcaataccaacaaaaatatctctctctatataagtaactaaacaataatttaaccatt 2537274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 236
Target Start/End: Complemental strand, 26647989 - 26647930
Alignment:
Q  177 tacgacttgtcatattttagaaatatcgaatgattttctcattttcaatctcaataaaaa 236  Q
    ||||| ||| ||||||||| |||||| |||| ||||||||||||||||||||||||||||    
T  26647989 tacgatttgccatattttaaaaatattgaataattttctcattttcaatctcaataaaaa 26647930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 12585551 - 12585591
Alignment:
Q  63 cctgcaatatagagtaggaaaagagcacccctgcctaagct 103  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  12585551 cctgcaatatatagtaggaaaagagcacccctgcctaagct 12585591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 273
Target Start/End: Complemental strand, 42164121 - 42164050
Alignment:
Q  204 gaatgattttctcattttcaatctcaataaaaatctc--tctatatataagtaactagacaatcatttaacc 273  Q
    |||||||||||||||||| ||| ||||||||||| ||  ||| ||||||| |||||| ||||||||||||||    
T  42164121 gaatgattttctcatttttaatatcaataaaaatatccttctctatataaataactaaacaatcatttaacc 42164050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 273
Target Start/End: Original strand, 40381606 - 40381712
Alignment:
Q  169 ttgtcctctacgacttgtcatattttagaaatatcgaatgattttctcattttcaatctcaataaaa--atctctctatatataagtaactagacaatca 266  Q
    ||||| ||||||| || | ||||| ||||||  | ||| |||||||||||||||||| |||||||||  || | ||| ||||||| |||||| |||||||    
T  40381606 ttgtcttctacgattttttatattatagaaactttgaaagattttctcattttcaatatcaataaaaatatatttctctatataaataactaaacaatca 40381705  T
Q  267 tttaacc 273  Q
    |||||||    
T  40381706 tttaacc 40381712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 271
Target Start/End: Original strand, 36974206 - 36974288
Alignment:
Q  191 ttttagaaatatcgaatgattttctcattttcaatctcaataaaaa--tctctctatatataagtaactagacaatcatttaa 271  Q
    ||||| |||||| ||||| ||| ||||||||| |||||| ||||||  ||||| ||||||||| ||||||  |||||||||||    
T  36974206 ttttaaaaatattgaatgttttactcattttctatctcactaaaaacatctctttatatataattaactaagcaatcatttaa 36974288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 269
Target Start/End: Original strand, 16340254 - 16340319
Alignment:
Q  204 gaatgattttctcattttcaatctcaataaaaatctctctatatataagtaactagacaatcattt 269  Q
    |||||||||||| ||||||||| ||||||||||  | ||| | ||||| |||||| ||||||||||    
T  16340254 gaatgattttcttattttcaatatcaataaaaaaatatctctgtataaataactaaacaatcattt 16340319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 274
Target Start/End: Complemental strand, 37728512 - 37728440
Alignment:
Q  204 gaatgattttctcattttcaatctcaataaaaatctc--tctatatataagtaactagacaatcatttaacca 274  Q
    |||| ||||||| ||||||||| ||||||||||| ||  ||| ||||||| |||||| || ||||||||||||    
T  37728512 gaataattttctaattttcaatatcaataaaaatatcattctctatataaataactaaacgatcatttaacca 37728440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 12585504 - 12585532
Alignment:
Q  16 atagcaggaaaacacaacagcactgcagc 44  Q
    |||||||||||||||||||||||||||||    
T  12585504 atagcaggaaaacacaacagcactgcagc 12585532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 6e-43; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 169 - 282
Target Start/End: Complemental strand, 6901695 - 6901574
Alignment:
Q  169 ttgtcctctacgacttgtcatattttagaaatatcgaatgattttctcattttcaatctcaataaaaatct--------ctctatatataagtaactaga 260  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||    
T  6901695 ttgtcctctacgacttgtcatattttggaaatatcgaatgattttctcattttcaatctcaataaaaatctctctctctctctatatataagtaactaga 6901596  T
Q  261 caatcatttaaccattgatcat 282  Q
    ||||||||||||||||||||||    
T  6901595 caatcatttaaccattgatcat 6901574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 6901801 - 6901761
Alignment:
Q  63 cctgcaatatagagtaggaaaagagcacccctgcctaagct 103  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  6901801 cctgcaatatatagtaggaaaagagcacccctgcctaagct 6901761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 236
Target Start/End: Original strand, 7644774 - 7644819
Alignment:
Q  191 ttttagaaatatcgaatgattttctcattttcaatctcaataaaaa 236  Q
    ||||||||||||  |||| |||||||||||||||||| ||||||||    
T  7644774 ttttagaaatattaaatgtttttctcattttcaatcttaataaaaa 7644819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 273
Target Start/End: Original strand, 6822574 - 6822645
Alignment:
Q  204 gaatgattttctcattttcaatctcaataaaaa--tctctctatatataagtaactagacaatcatttaacc 273  Q
    |||||||||  ||||||||||| ||||||||||  ||| ||| ||||||| |||||| ||||| ||||||||    
T  6822574 gaatgatttgttcattttcaatatcaataaaaatttctttctttatataaataactaaacaattatttaacc 6822645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 186 - 281
Target Start/End: Original strand, 49600711 - 49600808
Alignment:
Q  186 tcatattttagaaatatcgaatgattttctcattttcaatctcaataaaaatctctc--tatatataagtaactagacaatcatttaaccattgatca 281  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||| |||||||| ||||    
T  49600711 tcatattttggaaatatcgaatgattttctcattttcaatctcaataaaaatctctctttctatataagtaactagacaatcatctaaccattaatca 49600808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 280
Target Start/End: Original strand, 44111228 - 44111326
Alignment:
Q  183 ttgtcatattttagaaatatcgaatgattttctcattttcaatctcaataaaa--atctctctatatataagtaactagacaatcatttaaccattgatc 280  Q
    ||||||| |||||||||||| |||| ||||| |||||||| ||||||||||||  ||| |||| |||||||||||||| |||| || |||||||||||||    
T  44111228 ttgtcattttttagaaatattgaataattttttcattttcgatctcaataaaaatatcactctctatataagtaactaaacaa-caattaaccattgatc 44111326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 34962258 - 34962345
Alignment:
Q  188 atattttagaaatatcgaatgattttctcattttcaatctcaataaaa---atctctctatatataagtaactagacaatcatttaac 272  Q
    ||||| ||||||||| ||||||||||||| |||||||| |||||||||   |||||  | ||||||| |||||| |||||||||||||    
T  34962258 atattctagaaatattgaatgattttctcgttttcaatatcaataaaaagtatctcattctatataaataactaaacaatcatttaac 34962345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 280
Target Start/End: Complemental strand, 10321374 - 10321273
Alignment:
Q  183 ttgtcatattttagaaatatcgaatgattttctcattttcaatctcaataaaaa----tctctctatatataagtaactagacaatcatttaaccattga 278  Q
    ||||||| ||| | ||||||| ||||||||||| ||||||||||||||||||||     |||||| |||||  ||||||| | |||||||||| ||||||    
T  10321374 ttgtcatttttcataaatatcaaatgattttctgattttcaatctcaataaaaacactcctctctctatatttgtaactaaataatcatttaatcattga 10321275  T
Q  279 tc 280  Q
    ||    
T  10321274 tc 10321273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 274
Target Start/End: Complemental strand, 1902238 - 1902166
Alignment:
Q  204 gaatgattttctcattttcaatctcaat--aaaaatctctctatatataagtaactagacaatcatttaacca 274  Q
    |||||||||||||||||||||| |||||  ||| |||| ||| ||||||| |||||| ||||| |||||||||    
T  1902238 gaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaatgatttaacca 1902166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 274
Target Start/End: Complemental strand, 1911684 - 1911612
Alignment:
Q  204 gaatgattttctcattttcaatctcaat--aaaaatctctctatatataagtaactagacaatcatttaacca 274  Q
    |||||||||||||||||||||| |||||  ||| |||| ||| ||||||| |||||| ||||| |||||||||    
T  1911684 gaatgattttctcattttcaatatcaatgaaaatatctttctctatataaataactaaacaatgatttaacca 1911612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 52259827 - 52259759
Alignment:
Q  169 ttgtcctctacgacttgtcatattttagaaatatcgaatgattttctcattttcaatctcaataaaaat 237  Q
    |||||||||||||  | | ||||| |||||| || |||||||||||||||| ||||| |||||||||||    
T  52259827 ttgtcctctacgatgttttatattctagaaacattgaatgattttctcattctcaatatcaataaaaat 52259759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 236
Target Start/End: Complemental strand, 54393404 - 54393337
Alignment:
Q  169 ttgtcctctacgacttgtcatattttagaaatatcgaatgattttctcattttcaatctcaataaaaa 236  Q
    ||||||||||||| |  ||||||| | ||||  | |||||||||||||||||||||| ||||||||||    
T  54393404 ttgtcctctacgattattcatattatggaaactttgaatgattttctcattttcaatatcaataaaaa 54393337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 49600540 - 49600568
Alignment:
Q  16 atagcaggaaaacacaacagcactgcagc 44  Q
    |||||||||||||||||||||||||||||    
T  49600540 atagcaggaaaacacaacagcactgcagc 49600568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 49600587 - 49600626
Alignment:
Q  63 cctgcaatatagagtaggaaaagagcacccctgcctaagct 103  Q
    ||||||||||| ||||||||||||||| |||||||||||||    
T  49600587 cctgcaatatatagtaggaaaagagca-ccctgcctaagct 49600626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 188 - 281
Target Start/End: Original strand, 22318521 - 22318613
Alignment:
Q  188 atattttagaaatatcgaatgattttctcattttcaatctcaataaaaa--tctctctatatataagtaactagacaatcatttaaccattgatca 281  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||   |||||||||||||||| ||||    
T  22318521 atattttcgaaatatcgaatgattttcacattttcaatctcaataaaaacctctctctatatataagtaact---caatcatttaaccattcatca 22318613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 187 - 276
Target Start/End: Complemental strand, 7813641 - 7813552
Alignment:
Q  187 catattttagaaatatcgaatgattttctcattttcaatctcaataaaaatctctctatatataagtaactagacaatcatttaaccatt 276  Q
    |||||| ||||||||| |||||||||||||||||| |||  ||| ||| || ||||| |||||||||||||| |||||  ||||||||||    
T  7813641 catattctagaaatattgaatgattttctcattttaaataccaacaaatatatctctctatataagtaactaaacaattgtttaaccatt 7813552  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 279
Target Start/End: Complemental strand, 31781099 - 31781011
Alignment:
Q  191 ttttagaaatatcgaatgattttctcattttcaatctcaataaaa-atctctctatatataagtaactagacaatcatttaaccattgat 279  Q
    ||||| ||||||||||| ||||||| ||||||||| | |||||||  ||||||| | |||||||||||| ||||||||||||| ||||||    
T  31781099 ttttaaaaatatcgaattattttcttattttcaattttaataaaacttctctctctgtataagtaacta-acaatcatttaactattgat 31781011  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 276
Target Start/End: Complemental strand, 21490369 - 21490270
Alignment:
Q  177 tacgacttgtcatattttagaaatatcgaatgattttctcattttcaatctcaataaaaatct--ctctatatataagtaactagacaatcatttaacca 274  Q
    ||||| || ||||||| | |||| || |||||||||||||| ||||||| ||||||||||| |   ||| ||| ||||||||  ||||||||||||||||    
T  21490369 tacgatttttcatattcttgaaacattgaatgattttctcaatttcaatatcaataaaaatatacatctctatctaagtaac--gacaatcatttaacca 21490272  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 42071433 - 42071465
Alignment:
Q  205 aatgattttctcattttcaatctcaataaaaat 237  Q
    ||||||||||||||||||||| |||||||||||    
T  42071433 aatgattttctcattttcaatatcaataaaaat 42071465  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 279
Target Start/End: Complemental strand, 6495841 - 6495737
Alignment:
Q  177 tacgacttgtcatattttagaaatatcgaatgattttctcattttcaatctcaataaaaat----ctctctatatataagtaactagacaatcatttaac 272  Q
    ||||| ||||||||||||  ||||||   |||||||||||||||| | |||||||||||||    ||||||||||||||||||||| |||||||||||      
T  6495841 tacgatttgtcatattttgaaaatatt--atgattttctcatttttagtctcaataaaaatatctctctctatatataagtaactaaacaatcatttagt 6495744  T
Q  273 cattgat 279  Q
    |||||||    
T  6495743 cattgat 6495737  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 187 - 276
Target Start/End: Original strand, 27907245 - 27907334
Alignment:
Q  187 catattttagaaatatcgaatgattttctcattttcaatctcaataaaaatctctctatatataagtaactagacaatcatttaaccatt 276  Q
    ||||||||  |||||| |||||||||| |||||||||||  ||| |||||| ||||| |||||||||||||| |||||  ||||||||||    
T  27907245 catattttgaaaatattgaatgattttttcattttcaataccaacaaaaatatctctctatataagtaactaaacaattgtttaaccatt 27907334  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 50977860 - 50977910
Alignment:
Q  213 tctcattttcaatctcaataaaa--atctctctatatataagtaactagac 261  Q
    |||||||||||||||||||||||  |||||||||||||||||||| |||||    
T  50977860 tctcattttcaatctcaataaaaacatctctctatatataagtaattagac 50977910  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 274
Target Start/End: Original strand, 46732648 - 46732724
Alignment:
Q  199 atatcgaatgattttctcattttcaatctcaataaaa-atctctctatatataagtaactagacaatcatttaacca 274  Q
    |||| ||||| |||||||||||||||| ||||||||| |||||| | ||||||| ||| || ||||||| |||||||    
T  46732648 atattgaatgtttttctcattttcaatatcaataaaatatctctttctatataaataattaaacaatcaattaacca 46732724  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 282
Target Start/End: Original strand, 1112105 - 1112142
Alignment:
Q  245 tatataagtaactagacaatcatttaaccattgatcat 282  Q
    ||||||||| || |||||||||||||||||||||||||    
T  1112105 tatataagttacaagacaatcatttaaccattgatcat 1112142  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 24368092 - 24368060
Alignment:
Q  205 aatgattttctcattttcaatctcaataaaaat 237  Q
    ||||||||||||||||||||| |||||||||||    
T  24368092 aatgattttctcattttcaatgtcaataaaaat 24368060  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 47552107 - 47552075
Alignment:
Q  204 gaatgattttctcattttcaatctcaataaaaa 236  Q
    |||||||||||||||||||||| ||||||||||    
T  47552107 gaatgattttctcattttcaatatcaataaaaa 47552075  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 236
Target Start/End: Original strand, 10710987 - 10711046
Alignment:
Q  177 tacgacttgtcatattttagaaatatcgaatgattttctcattttcaatctcaataaaaa 236  Q
    ||||| ||| ||||||||| |||||| |||| ||||||||||||||||||||||||||||    
T  10710987 tacgatttgccatattttaaaaatattgaataattttctcattttcaatctcaataaaaa 10711046  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 210 - 277
Target Start/End: Original strand, 18108288 - 18108357
Alignment:
Q  210 ttttctcattttcaatctcaataaaa--atctctctatatataagtaactagacaatcatttaaccattg 277  Q
    ||||||||||||||||||||||||||  || |||||||||||||||||||| |  | |||||||||||||    
T  18108288 ttttctcattttcaatctcaataaaaacatttctctatatataagtaactaaaagagcatttaaccattg 18108357  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 27343211 - 27343160
Alignment:
Q  204 gaatgattttctcattttcaatctcaataaaaatctctctatatataagtaa 255  Q
    |||||||||||||||||||||| ||||||||||| |||||  ||||||||||    
T  27343211 gaatgattttctcattttcaatgtcaataaaaatatctctcaatataagtaa 27343160  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 236
Target Start/End: Complemental strand, 3294279 - 3294213
Alignment:
Q  169 ttgtcctctacgacttgtcatattttagaaatatcgaatgattttctcattttcaatctcaataaaaa 236  Q
    |||| |||||||| || |||||||||| |||||  ||||||| || ||||||||||||||||||||||    
T  3294279 ttgttctctacgatttatcatattttaaaaataatgaatgatatt-tcattttcaatctcaataaaaa 3294213  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 17832254 - 17832169
Alignment:
Q  188 atattttagaaatatcgaatgattttctcattttcaatctcaataaaaatctctctat--atataagtaactagacaatcatttaa 271  Q
    ||||| || |||||| ||||| ||||||| |||||| | ||||||||||| || || |  ||||||||||||| ||||||||||||    
T  17832254 atattctaaaaatattgaatggttttctcgttttcagtatcaataaaaatatcacttttaatataagtaactaaacaatcatttaa 17832169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 241
Target Start/End: Complemental strand, 14811505 - 14811437
Alignment:
Q  172 tcctctacgacttgtcatattttagaaatatcgaatgattttctcattttcaatctcaataaaaatctct 241  Q
    |||||||| ||||| ||| ||||  ||||||| ||||| ||| |||||||||||||||||||||| ||||    
T  14811505 tcctctacaacttg-cattttttgaaaatatctaatgactttttcattttcaatctcaataaaaacctct 14811437  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 258
Target Start/End: Complemental strand, 29095902 - 29095846
Alignment:
Q  204 gaatgattttctcattttcaatctcaataaaa--atctctctatatataagtaacta 258  Q
    ||||||||||||||||||||||||||||||||  |||| ||| ||| ||||||||||    
T  29095902 gaatgattttctcattttcaatctcaataaaaacatctttctctatgtaagtaacta 29095846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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