View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7704_high_25 (Length: 224)

Name: NF7704_high_25
Description: NF7704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7704_high_25
NF7704_high_25
[»] chr2 (8 HSPs)
chr2 (44-224)||(10366199-10366379)
chr2 (1-43)||(34520597-34520639)
chr2 (4-38)||(17537793-17537827)
chr2 (1-43)||(23719978-23720020)
chr2 (1-43)||(24107650-24107692)
chr2 (1-45)||(6978116-6978160)
chr2 (1-32)||(10359431-10359462)
chr2 (1-45)||(37311523-37311567)
[»] chr3 (14 HSPs)
chr3 (1-45)||(46413169-46413213)
chr3 (1-45)||(49274711-49274755)
chr3 (1-38)||(34470942-34470979)
chr3 (1-45)||(11377862-11377906)
chr3 (1-45)||(50458131-50458175)
chr3 (1-45)||(51012167-51012211)
chr3 (7-45)||(14632759-14632797)
chr3 (1-43)||(30193829-30193871)
chr3 (1-38)||(10052238-10052275)
chr3 (1-45)||(44928752-44928796)
chr3 (1-43)||(18441668-18441710)
chr3 (1-43)||(19486742-19486784)
chr3 (6-43)||(42322294-42322331)
chr3 (1-38)||(47759833-47759870)
[»] chr1 (8 HSPs)
chr1 (1-45)||(49260561-49260605)
chr1 (1-43)||(37779432-37779474)
chr1 (1-38)||(15355666-15355703)
chr1 (1-38)||(35186292-35186329)
chr1 (1-45)||(40532259-40532303)
chr1 (1-45)||(23343801-23343845)
chr1 (1-41)||(24362944-24362984)
chr1 (1-45)||(39856125-39856169)
[»] chr4 (9 HSPs)
chr4 (1-43)||(51026670-51026712)
chr4 (1-38)||(47873324-47873361)
chr4 (1-45)||(43888372-43888416)
chr4 (7-45)||(17054305-17054343)
chr4 (1-34)||(2774314-2774347)
chr4 (1-38)||(21170770-21170807)
chr4 (1-38)||(36775364-36775401)
chr4 (1-38)||(49790812-49790849)
chr4 (1-38)||(49816296-49816333)
[»] chr8 (4 HSPs)
chr8 (1-45)||(26487740-26487784)
chr8 (1-45)||(42167818-42167862)
chr8 (1-43)||(19241539-19241581)
chr8 (1-43)||(19314723-19314765)
[»] chr7 (4 HSPs)
chr7 (1-45)||(22292130-22292174)
chr7 (1-43)||(43350273-43350315)
chr7 (8-45)||(17184483-17184520)
chr7 (4-45)||(20876929-20876970)
[»] chr6 (1 HSPs)
chr6 (1-43)||(12398081-12398123)
[»] chr5 (4 HSPs)
chr5 (1-43)||(1696094-1696136)
chr5 (1-38)||(6792328-6792365)
chr5 (1-38)||(7484374-7484411)
chr5 (1-37)||(4722972-4723008)


Alignment Details
Target: chr2 (Bit Score: 169; Significance: 9e-91; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 44 - 224
Target Start/End: Original strand, 10366199 - 10366379
Alignment:
Q  44 gagttaacgagtttcacactaattgttagtgagaacttcagttcaatgtctcgatagaataattcaaatgacttacttgcatgttactaaagagagataa 143  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10366199 gagttaatgagttttacactaattgttagtgagaacttcagttcaatgtctggatagaataattcaaatgacttacttgcatgttactaaagagagataa 10366298  T
Q  144 ggcggttgttcatgcactctcacaagaggtatttagattagctccgatcttaccaaaaatatatgctcaaaagttttcttt 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10366299 ggcggttgttcatgcactctcacaagaggtatttagattagctccgatcttaccaaaaatatatgctcaaaagttttcttt 10366379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 34520597 - 34520639
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 43  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  34520597 ggtgacgacaagaagaaagaaaaatcgccgatgacatgacacg 34520639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 17537793 - 17537827
Alignment:
Q  4 gacgacaagaagaaagaaaaatcaccgatgacatg 38  Q
    |||||||||||||||||||||||||||||||||||    
T  17537793 gacgacaagaagaaagaaaaatcaccgatgacatg 17537827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 23719978 - 23720020
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 43  Q
    |||||||||||||||||||||||||| ||||||||||| ||||    
T  23719978 ggtgacgacaagaagaaagaaaaatcgccgatgacatggcacg 23720020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 24107650 - 24107692
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 43  Q
    |||||||||||||||||||||||||| ||||||||||| ||||    
T  24107650 ggtgacgacaagaagaaagaaaaatcgccgatgacatggcacg 24107692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 6978160 - 6978116
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 45  Q
    |||||||||||||||||||||||||  ||||||||||| ||||||    
T  6978160 ggtgacgacaagaagaaagaaaaattgccgatgacatggcacgga 6978116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 10359431 - 10359462
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgat 32  Q
    ||||||||||||||||||||||||||||||||    
T  10359431 ggtgacgacaagaagaaagaaaaatcaccgat 10359462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 37311523 - 37311567
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 45  Q
    ||||||||||||||||||||||||||   ||||||||| ||||||    
T  37311523 ggtgacgacaagaagaaagaaaaatcgttgatgacatggcacgga 37311567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 46413169 - 46413213
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  46413169 ggtgacgacaagaagaaagaaaaatcactgatgacatgacacgga 46413213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 49274755 - 49274711
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 45  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  49274755 ggtgacgacaagaagaaagaaaaatcaccgatgacatggcacgga 49274711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 34470942 - 34470979
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatg 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34470942 ggtgacgacaagaagaaagaaaaatcaccgatgacatg 34470979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11377862 - 11377906
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 45  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||    
T  11377862 ggtgacgacaagaagaaagaaaaatcgccgatgacatggcacgga 11377906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 50458131 - 50458175
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 45  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||    
T  50458131 ggtgacgacaagaagaaagaaaaatcgccgatgacatggcacgga 50458175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 51012167 - 51012211
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 45  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||    
T  51012167 ggtgacgacaagaagaaagaaaaatcgccgatgacatggcacgga 51012211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 14632797 - 14632759
Alignment:
Q  7 gacaagaagaaagaaaaatcaccgatgacatgacacgga 45  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  14632797 gacaagaagaaataaaaatcaccgatgacatgacacgga 14632759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 30193871 - 30193829
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 43  Q
    |||||||||||||||||||||||||| |||||||||| |||||    
T  30193871 ggtgacgacaagaagaaagaaaaatcgccgatgacattacacg 30193829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 10052238 - 10052275
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatg 38  Q
    |||||||||||||||||||||||||||| |||||||||    
T  10052238 ggtgacgacaagaagaaagaaaaatcactgatgacatg 10052275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 44928796 - 44928752
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 45  Q
    ||||||||||||||||||||||||||  |||||||||| ||||||    
T  44928796 ggtgacgacaagaagaaagaaaaatcgtcgatgacatggcacgga 44928752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 18441710 - 18441668
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 43  Q
    ||||| |||||||||||||||||||| || |||||||||||||    
T  18441710 ggtgatgacaagaagaaagaaaaatcgcctatgacatgacacg 18441668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 19486784 - 19486742
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 43  Q
    ||||| |||||||||||||||||||| || |||||||||||||    
T  19486784 ggtgatgacaagaagaaagaaaaatcgcctatgacatgacacg 19486742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 42322294 - 42322331
Alignment:
Q  6 cgacaagaagaaagaaaaatcaccgatgacatgacacg 43  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  42322294 cgacaagaagaaagaaaaatcgccgatgacatggcacg 42322331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 47759833 - 47759870
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatg 38  Q
    |||||||||||||||||||||||| | |||||||||||    
T  47759833 ggtgacgacaagaagaaagaaaaaacgccgatgacatg 47759870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 49260561 - 49260605
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 45  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  49260561 ggtgacgacaagaagaaagaaaaatcaccgatgacatggcacgga 49260605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 37779474 - 37779432
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 43  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  37779474 ggtgacgacaagaagaaagaaaaatcgccgatgacatgacacg 37779432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 15355666 - 15355703
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatg 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  15355666 ggtgacgacaagaagaaagaaaaatcaccgatgacatg 15355703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 35186329 - 35186292
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatg 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  35186329 ggtgacgacaagaagaaagaaaaatcaccgatgacatg 35186292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 40532259 - 40532303
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 45  Q
    |||||||| ||||||||||||||||| ||||||||||| ||||||    
T  40532259 ggtgacgataagaagaaagaaaaatcgccgatgacatggcacgga 40532303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 23343845 - 23343801
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 45  Q
    ||||||||||||||||| ||||||||  |||||||||| ||||||    
T  23343845 ggtgacgacaagaagaatgaaaaatcgtcgatgacatggcacgga 23343801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 24362944 - 24362984
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatgaca 41  Q
    ||||| |||||||||||||||||||| || |||||||||||    
T  24362944 ggtgatgacaagaagaaagaaaaatcgcctatgacatgaca 24362984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 39856125 - 39856169
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 45  Q
    ||||| |||||||||||||||||||| | ||||||||| ||||||    
T  39856125 ggtgatgacaagaagaaagaaaaatcgctgatgacatggcacgga 39856169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 51026670 - 51026712
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 43  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  51026670 ggtgacgacaagaagaaagaaaaatcaccgatgacatggcacg 51026712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 47873361 - 47873324
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatg 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  47873361 ggtgacgacaagaagaaagaaaaatcaccgatgacatg 47873324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 43888372 - 43888416
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 45  Q
    ||||||||||||||||||||||||||  |||||||||| ||||||    
T  43888372 ggtgacgacaagaagaaagaaaaatcgtcgatgacatggcacgga 43888416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 17054305 - 17054343
Alignment:
Q  7 gacaagaagaaagaaaaatcaccgatgacatgacacgga 45  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  17054305 gacaagaagaaagaaaaatcgccgatgacatggcacgga 17054343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 2774347 - 2774314
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatga 34  Q
    |||||||||||||||||||||||||| |||||||    
T  2774347 ggtgacgacaagaagaaagaaaaatcgccgatga 2774314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 21170807 - 21170770
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatg 38  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  21170807 ggtgatgacaagaagaaagaaaaatcgccgatgacatg 21170770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 36775364 - 36775401
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatg 38  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  36775364 ggtgacaacaagaagaaagaaaaatcactgatgacatg 36775401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 49790812 - 49790849
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatg 38  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  49790812 ggtgacgacaagaagaaagaaaaatcgtcgatgacatg 49790849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 49816296 - 49816333
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatg 38  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  49816296 ggtgatgacaagaagaaagaaaaatcgccgatgacatg 49816333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 26487784 - 26487740
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 45  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||    
T  26487784 ggtgacgacaagaagaaagaaaaatcgccgatgacatggcacgga 26487740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 42167818 - 42167862
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 45  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||    
T  42167818 ggtgacgacaagaagaaagaaaaatcgccgatgacatggcacgga 42167862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 19241539 - 19241581
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 43  Q
    ||||||||||||||||||||||||||  |||||||||| ||||    
T  19241539 ggtgacgacaagaagaaagaaaaatcgtcgatgacatggcacg 19241581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 19314723 - 19314765
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 43  Q
    ||||||||||||||||||||||||||  |||||||||| ||||    
T  19314723 ggtgacgacaagaagaaagaaaaatcgtcgatgacatggcacg 19314765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 22292174 - 22292130
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 45  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||    
T  22292174 ggtgacgacaagaagaaagaaaaatcgccgatgacatggcacgga 22292130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 43350273 - 43350315
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 43  Q
    |||||||||||||||||||||| ||| ||||||||||| ||||    
T  43350273 ggtgacgacaagaagaaagaaatatcgccgatgacatggcacg 43350315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 17184520 - 17184483
Alignment:
Q  8 acaagaagaaagaaaaatcaccgatgacatgacacgga 45  Q
    ||||||||||||||||||| ||||||||||| ||||||    
T  17184520 acaagaagaaagaaaaatcgccgatgacatggcacgga 17184483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 20876929 - 20876970
Alignment:
Q  4 gacgacaagaagaaagaaaaatcaccgatgacatgacacgga 45  Q
    ||||||||||||||||||||||| | ||||||||| ||||||    
T  20876929 gacgacaagaagaaagaaaaatcgctgatgacatggcacgga 20876970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 12398123 - 12398081
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 43  Q
    |||||||||||||||||||||||||||| ||||||||| ||||    
T  12398123 ggtgacgacaagaagaaagaaaaatcacggatgacatggcacg 12398081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 1696136 - 1696094
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 43  Q
    ||||||||||||||||||||||||||  |||||||||| ||||    
T  1696136 ggtgacgacaagaagaaagaaaaatcgtcgatgacatggcacg 1696094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 6792328 - 6792365
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatg 38  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  6792328 ggtgacaacaaaaagaaagaaaaatcaccgatgacatg 6792365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 7484374 - 7484411
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacatg 38  Q
    |||||||||||||||||||||||||  |||||||||||    
T  7484374 ggtgacgacaagaagaaagaaaaattgccgatgacatg 7484411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 4722972 - 4723008
Alignment:
Q  1 ggtgacgacaagaagaaagaaaaatcaccgatgacat 37  Q
    ||||||||||||||||||||||| || ||||||||||    
T  4722972 ggtgacgacaagaagaaagaaaattcgccgatgacat 4723008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University