View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7704_high_27 (Length: 221)

Name: NF7704_high_27
Description: NF7704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7704_high_27
NF7704_high_27
[»] chr1 (4 HSPs)
chr1 (1-204)||(8750316-8750524)
chr1 (100-158)||(27413393-27413452)
chr1 (106-196)||(26346954-26347044)
chr1 (100-159)||(38733196-38733256)
[»] chr3 (5 HSPs)
chr3 (100-138)||(35018542-35018580)
chr3 (100-159)||(22729145-22729205)
chr3 (106-159)||(33640090-33640144)
chr3 (100-197)||(45828026-45828124)
chr3 (106-138)||(1800092-1800124)
[»] chr8 (6 HSPs)
chr8 (109-197)||(16962234-16962323)
chr8 (105-138)||(422437-422470)
chr8 (100-196)||(11232173-11232270)
chr8 (100-196)||(11232408-11232505)
chr8 (100-159)||(5590347-5590407)
chr8 (106-138)||(38476105-38476137)
[»] chr7 (7 HSPs)
chr7 (100-180)||(21861318-21861399)
chr7 (106-139)||(28080730-28080763)
chr7 (100-136)||(1596662-1596698)
chr7 (106-138)||(5871797-5871829)
chr7 (106-138)||(5871941-5871973)
chr7 (106-138)||(26239901-26239933)
chr7 (102-138)||(40121905-40121941)
[»] chr2 (2 HSPs)
chr2 (100-196)||(14466389-14466486)
chr2 (106-138)||(40149221-40149253)
[»] chr5 (1 HSPs)
chr5 (100-138)||(7133989-7134027)
[»] chr4 (3 HSPs)
chr4 (100-138)||(50543546-50543584)
chr4 (100-137)||(30530141-30530178)
chr4 (106-138)||(53828508-53828540)
[»] scaffold0519 (1 HSPs)
scaffold0519 (100-180)||(1940-2021)
[»] chr6 (3 HSPs)
chr6 (100-180)||(13353225-13353306)
chr6 (100-180)||(33796350-33796431)
chr6 (109-137)||(10145738-10145766)


Alignment Details
Target: chr1 (Bit Score: 164; Significance: 8e-88; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 8750524 - 8750316
Alignment:
Q  1 caatgtgagacttttaacacaccctcacacctggaattggacatatggggtatc-tccaagtgatctgatagcagaaacctgatagtaaatagccaaac- 98  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||| || |||||||||||||||||||||||||     
T  8750524 caatgtgagactcttaacacaccctcacaccttgaattggacatatggagtatcatccaagtgatctgattgcggaaacctgatagtaaatagccaaacg 8750425  T
Q  99 ---tttggataggctctgatatcatcttagaaattgtggttggacatacacaatctcacaaaacgtgtctgtaaggtgaggattgttactacttataaac 195  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8750424 aattttggataggctctgatatcatcttagaaattgtggttggacatacacaatctcacaaaacgtgtctgtaaggtgaggattgttactacttataaac 8750325  T
Q  196 attccatat 204  Q
    |||||||||    
T  8750324 attccatat 8750316  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 158
Target Start/End: Complemental strand, 27413452 - 27413393
Alignment:
Q  100 ttggataggctctgatatcatcttagaaattgtggttggacat-acacaatctcacaaaa 158  Q
    ||||| |||||||||||||||||||||||| |||||||||| | |||||| |||||||||    
T  27413452 ttggagaggctctgatatcatcttagaaatcgtggttggacctaacacaacctcacaaaa 27413393  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 196
Target Start/End: Original strand, 26346954 - 26347044
Alignment:
Q  106 aggctctgatatcatcttagaaattgtggttggacatacacaatctcacaaaacgtgtctgtaaggtgaggattgttactacttataaaca 196  Q
    |||||||||||||||||||||||| |||||  | |  |||||| | ||||||||| |  ||| |||||||||||||  | |||||||||||    
T  26346954 aggctctgatatcatcttagaaatcgtggtgaggctaacacaaccccacaaaacgggcttgtgaggtgaggattgtctccacttataaaca 26347044  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 159
Target Start/End: Complemental strand, 38733256 - 38733196
Alignment:
Q  100 ttggataggctctgatatcatcttagaaattgtggttggacat-acacaatctcacaaaac 159  Q
    ||||| || |||||||| |||||||||||| ||||||| || | |||||||||||||||||    
T  38733256 ttggagagactctgataccatcttagaaatcgtggttgaacctaacacaatctcacaaaac 38733196  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 138
Target Start/End: Complemental strand, 35018580 - 35018542
Alignment:
Q  100 ttggataggctctgatatcatcttagaaattgtggttgg 138  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  35018580 ttggataggctctgatatcatcttagaatttgtggttgg 35018542  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 159
Target Start/End: Complemental strand, 22729205 - 22729145
Alignment:
Q  100 ttggataggctctgatatcatcttagaaattgtggttggacat-acacaatctcacaaaac 159  Q
    ||||||||| ||||||| ||||||||||||||||||||| | | |||||| ||||||||||    
T  22729205 ttggataggatctgataccatcttagaaattgtggttgggcctaacacaacctcacaaaac 22729145  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 33640144 - 33640090
Alignment:
Q  106 aggctctgatatcatcttagaaattgtggttggacat-acacaatctcacaaaac 159  Q
    |||||||||||||||||||||||||||| |||| | | |||||||| ||||||||    
T  33640144 aggctctgatatcatcttagaaattgtgattgggcctaacacaatcccacaaaac 33640090  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 197
Target Start/End: Complemental strand, 45828124 - 45828026
Alignment:
Q  100 ttggataggctctgatatcatcttagaaattgtggttggacat-acacaatctcacaaaacgtgtctgtaaggtgaggattgttactacttataaacat 197  Q
    ||||| ||||||||||| |||||||||||||||||| || | | |||||| ||||||||||  |  ||| ||||||||||||   | ||||||||||||    
T  45828124 ttggagaggctctgataccatcttagaaattgtggtagggcctaacacaacctcacaaaaccggcttgtgaggtgaggattgccccaacttataaacat 45828026  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 1800124 - 1800092
Alignment:
Q  106 aggctctgatatcatcttagaaattgtggttgg 138  Q
    ||||||||||| |||||||||||||||||||||    
T  1800124 aggctctgataccatcttagaaattgtggttgg 1800092  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 197
Target Start/End: Original strand, 16962234 - 16962323
Alignment:
Q  109 ctctgatatcatcttagaaattgtggttggacata-cacaatctcacaaaacgtgtctgtaaggtgaggattgttactacttataaacat 197  Q
    ||||||||  |||||| ||||||||||||||| || ||||||| ||||||||  || ||| ||||||| |||||| | ||||||||||||    
T  16962234 ctctgatacaatcttaaaaattgtggttggacctaacacaatcccacaaaaccggtttgtgaggtgagaattgttcccacttataaacat 16962323  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 422437 - 422470
Alignment:
Q  105 taggctctgatatcatcttagaaattgtggttgg 138  Q
    |||||||||||| |||||||||||||||||||||    
T  422437 taggctctgataccatcttagaaattgtggttgg 422470  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 196
Target Start/End: Original strand, 11232173 - 11232270
Alignment:
Q  100 ttggataggctctgatatcatcttagaaattgtggttggacata-cacaatctcacaaaacgtgtctgtaaggtgaggattgttactacttataaaca 196  Q
    ||||| ||||||||||| |||||||||||| |||||||| | || ||||| | ||||||||  |  ||||||||||||||||   | |||||||||||    
T  11232173 ttggagaggctctgataccatcttagaaatggtggttgggcctaacacaaccccacaaaaccggcttgtaaggtgaggattgcccccacttataaaca 11232270  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 196
Target Start/End: Original strand, 11232408 - 11232505
Alignment:
Q  100 ttggataggctctgatatcatcttagaaattgtggttggacata-cacaatctcacaaaacgtgtctgtaaggtgaggattgttactacttataaaca 196  Q
    ||||| ||||||||||| |||||||||||| |||||||| | || ||||| | ||||||||  |  ||||||||||||||||   | |||||||||||    
T  11232408 ttggagaggctctgataccatcttagaaatggtggttgggcctaacacaaccccacaaaaccggcttgtaaggtgaggattgcccccacttataaaca 11232505  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 159
Target Start/End: Original strand, 5590347 - 5590407
Alignment:
Q  100 ttggataggctctgatatcatcttagaaattgtggttggacat-acacaatctcacaaaac 159  Q
    ||||||||| ||||||| ||| ||||||||||||||||| | | |||||| ||||||||||    
T  5590347 ttggataggatctgataccattttagaaattgtggttgggcctaacacaacctcacaaaac 5590407  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 38476137 - 38476105
Alignment:
Q  106 aggctctgatatcatcttagaaattgtggttgg 138  Q
    ||||||||||| |||||||||||||||||||||    
T  38476137 aggctctgataccatcttagaaattgtggttgg 38476105  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 180
Target Start/End: Complemental strand, 21861399 - 21861318
Alignment:
Q  100 ttggataggctctgatatcatcttagaaattgtggttggacat-acacaatctcacaaaacgtgtctgtaaggtgaggattg 180  Q
    ||||| ||||||||||| |||||||||||| |||||||| | | |||||||| ||||||||  |  ||||||||||||||||    
T  21861399 ttggagaggctctgataccatcttagaaatggtggttgggcctaacacaatcccacaaaaccggcttgtaaggtgaggattg 21861318  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 139
Target Start/End: Complemental strand, 28080763 - 28080730
Alignment:
Q  106 aggctctgatatcatcttagaaattgtggttgga 139  Q
    |||||||||||||||||||||||| |||||||||    
T  28080763 aggctctgatatcatcttagaaatcgtggttgga 28080730  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 136
Target Start/End: Complemental strand, 1596698 - 1596662
Alignment:
Q  100 ttggataggctctgatatcatcttagaaattgtggtt 136  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  1596698 ttggagaggctctgataccatcttagaaattgtggtt 1596662  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 5871797 - 5871829
Alignment:
Q  106 aggctctgatatcatcttagaaattgtggttgg 138  Q
    |||||||||||||||||||||||| ||||||||    
T  5871797 aggctctgatatcatcttagaaatcgtggttgg 5871829  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 5871941 - 5871973
Alignment:
Q  106 aggctctgatatcatcttagaaattgtggttgg 138  Q
    |||||||||||||||||||||||| ||||||||    
T  5871941 aggctctgatatcatcttagaaatcgtggttgg 5871973  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 26239901 - 26239933
Alignment:
Q  106 aggctctgatatcatcttagaaattgtggttgg 138  Q
    ||||||||||| |||||||||||||||||||||    
T  26239901 aggctctgataccatcttagaaattgtggttgg 26239933  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 40121905 - 40121941
Alignment:
Q  102 ggataggctctgatatcatcttagaaattgtggttgg 138  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  40121905 ggataggctctgataccatcttagaaatcgtggttgg 40121941  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 196
Target Start/End: Original strand, 14466389 - 14466486
Alignment:
Q  100 ttggataggctctgatatcatcttagaaattgtggttggacat-acacaatctcacaaaacgtgtctgtaaggtgaggattgttactacttataaaca 196  Q
    ||||| ||||||||||| |||||||||||| |||||||| | | |||||| | ||||||||  |  |||||||||||||||| | | |||||||||||    
T  14466389 ttggagaggctctgataccatcttagaaatggtggttgggcctaacacaaccccacaaaaccggcttgtaaggtgaggattgctcccacttataaaca 14466486  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 40149221 - 40149253
Alignment:
Q  106 aggctctgatatcatcttagaaattgtggttgg 138  Q
    ||||||||||| |||||||||||||||||||||    
T  40149221 aggctctgataccatcttagaaattgtggttgg 40149253  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 138
Target Start/End: Original strand, 7133989 - 7134027
Alignment:
Q  100 ttggataggctctgatatcatcttagaaattgtggttgg 138  Q
    ||||| ||||||||||||||| |||||||||||||||||    
T  7133989 ttggagaggctctgatatcatattagaaattgtggttgg 7134027  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 138
Target Start/End: Original strand, 50543546 - 50543584
Alignment:
Q  100 ttggataggctctgatatcatcttagaaattgtggttgg 138  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  50543546 ttggagaggctctgatatcatcttagaaatcgtggttgg 50543584  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 30530141 - 30530178
Alignment:
Q  100 ttggataggctctgatatcatcttagaaattgtggttg 137  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  30530141 ttggagaggctctgataccatcttagaaattgtggttg 30530178  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 53828508 - 53828540
Alignment:
Q  106 aggctctgatatcatcttagaaattgtggttgg 138  Q
    ||||||||||| |||||||||||||||||||||    
T  53828508 aggctctgataccatcttagaaattgtggttgg 53828540  T

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Target: scaffold0519 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 180
Target Start/End: Complemental strand, 2021 - 1940
Alignment:
Q  100 ttggataggctctgatatcatcttagaaattgtggttggacat-acacaatctcacaaaacgtgtctgtaaggtgaggattg 180  Q
    ||||| ||||||||||| |||||||||||| |||||||| | | |||||| | ||||||||  |  ||||||||||||||||    
T  2021 ttggagaggctctgataccatcttagaaatggtggttgggcctaacacaaccccacaaaaccggcttgtaaggtgaggattg 1940  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 180
Target Start/End: Complemental strand, 13353306 - 13353225
Alignment:
Q  100 ttggataggctctgatatcatcttagaaattgtggttggacat-acacaatctcacaaaacgtgtctgtaaggtgaggattg 180  Q
    ||||| ||||||||||| |||||||||||| |||||||| | | |||||| | ||||||||  |  ||||||||||||||||    
T  13353306 ttggagaggctctgataccatcttagaaatggtggttgggcctaacacaaccccacaaaaccggcttgtaaggtgaggattg 13353225  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 180
Target Start/End: Complemental strand, 33796431 - 33796350
Alignment:
Q  100 ttggataggctctgatatcatcttagaaattgtggttggacat-acacaatctcacaaaacgtgtctgtaaggtgaggattg 180  Q
    ||||| ||||||||||| |||||||||||| |||||||| | | |||||| | ||||||||  |  ||||||||||||||||    
T  33796431 ttggagaggctctgataccatcttagaaatggtggttgggcctaacacaaccccacaaaaccggcttgtaaggtgaggattg 33796350  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 137
Target Start/End: Original strand, 10145738 - 10145766
Alignment:
Q  109 ctctgatatcatcttagaaattgtggttg 137  Q
    |||||||||||||||||||||||||||||    
T  10145738 ctctgatatcatcttagaaattgtggttg 10145766  T

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