View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7704_high_30 (Length: 212)
Name: NF7704_high_30
Description: NF7704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7704_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 19611046 - 19610869
Alignment:
| Q |
18 |
tcaacaaattataactaagaacaaaaacacaaattatcacttatctcaaattgaattaattagaacaaaatcacgaaccctaagatgaagattctacaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19611046 |
tcaacaaattataactaagaacaaaaacacaaattatcacttatctcaaattgaattaattagaacaaaatcacgaaccctaagatgaagattctacaac |
19610947 |
T |
|
| Q |
118 |
gaatggaatgctgatgaatcgagctatgaattgacgttgtgaactgaacgaagaatcgaagtgattattcgaggttgt |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
19610946 |
gaatggaatgctgatgaatcgagctatgaattgacgttgtgaattgaacgaagaatcgaagtgattattcgaggttgt |
19610869 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 28462717 - 28462894
Alignment:
| Q |
18 |
tcaacaaattataactaagaacaaaaacacaaattatcacttatctcaaattgaattaattagaacaaaatcacgaaccctaagatgaagattctacaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28462717 |
tcaacaaattataactaagaacaaaaacacaaattatcacttatctcaaattgaattaattagaacaaaatcacgaaccctaagatgaagattctataac |
28462816 |
T |
|
| Q |
118 |
gaatggaatgctgatgaatcgagctatgaattgacgttgtgaactgaacgaagaatcgaagtgattattcgaggttgt |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28462817 |
gaatggaatgctgatgaatcgagctatgaattgacgttgtgaactgaacgaagaatcgaagtgattattcgaggttgt |
28462894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 7599805 - 7599628
Alignment:
| Q |
18 |
tcaacaaattataactaagaacaaaaacacaaattatcacttatctcaaattgaattaattagaacaaaatcacgaaccctaagatgaagattctacaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
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|
| T |
7599805 |
tcaacaaattataactaagaacaaaaacacaaattatcacttatctcaaattgaattaattagaacaaaatcacgagccctaagatgaagattctataac |
7599706 |
T |
|
| Q |
118 |
gaatggaatgctgatgaatcgagctatgaattgacgttgtgaactgaacgaagaatcgaagtgattattcgaggttgt |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7599705 |
gaatggaatgctgatgaatcgagctatgaattgacgttgtgaactgaacgaagaatcgaagtgattattcgaggttgt |
7599628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 23361481 - 23361304
Alignment:
| Q |
18 |
tcaacaaattataactaagaacaaaaacacaaattatcacttatctcaaattgaattaattagaacaaaatcacgaaccctaagatgaagattctacaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23361481 |
tcaacaaattataactaagaacaaaaacacaaattatcacttatctcaaattgaattaattagaacaaaatcacgaaccctaagatgaagattctacaac |
23361382 |
T |
|
| Q |
118 |
gaatggaatgctgatgaatcgagctatgaattgacgttgtgaactgaacgaagaatcgaagtgattattcgaggttgt |
195 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
23361381 |
gaatggaatgctgatgaatctagctatgaattgacgttgtgacttgaacgaagaatcgaagtgattattcgaggttgt |
23361304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 45401897 - 45401720
Alignment:
| Q |
18 |
tcaacaaattataactaagaacaaaaacacaaattatcacttatctcaaattgaattaattagaacaaaatcacgaaccctaagatgaagattctacaac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45401897 |
tcaacaaattataactaagaacaaaaacacaaattatcacttatctcaaattgaattaattagaacaaaatcacgaaccctaagatgaagattctgcaat |
45401798 |
T |
|
| Q |
118 |
gaatggaatgctgatgaatcgagctatgaattgacgttgtgaactgaacgaagaatcgaagtgattattcgaggttgt |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45401797 |
gaatggaatgctgatgaatcgagctatgaattgacgttgtgaactgaacgaagaatcaaagtgattattcgaggttgt |
45401720 |
T |
|
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