View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7704_high_7 (Length: 524)
Name: NF7704_high_7
Description: NF7704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7704_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 130 - 503
Target Start/End: Complemental strand, 8516333 - 8515965
Alignment:
| Q |
130 |
catttgaccagtataattgttgtacaagtaaataaactaaaatagctaacgggagaataacaaaaaagaaatatatgtttgtaaatttgtatagnnnnnn |
229 |
Q |
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| T |
8516333 |
catttgtcctgtataattgttgtacaagtaaataaactacaatagctaaggggggagtaacaaaaaaga--tatatgtttgtaaatttgtatagttttta |
8516236 |
T |
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| Q |
230 |
ncactgcattcgatcttttttcttagaatagtctattatcattggtttgaactccacatgtgactggtgcagtagctctcaatttcttcaagtaccaaat |
329 |
Q |
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| T |
8516235 |
tcgcatcatttgatctttttt---agaatagtctattatcattggtttgaactccacatgtgactggtgcagtagctctcaatttcttcaagtaccaaat |
8516139 |
T |
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| Q |
330 |
accagctccaattccaattgcccctgcagctgagaatgctgtaactgtccctgaaaccacaattccaaaacaaaacaacaatgagcctaagtttttgtta |
429 |
Q |
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| T |
8516138 |
accagctccaattccaattgcccctgcagctgagaatgctgtaactgtccctgaaaccacaattaaaaaacaaaacaacaatgagcctaagtttttgtta |
8516039 |
T |
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| Q |
430 |
tttcagtaacatatctagttaatgaaacttagtttatatctgtcacctgcgattacatggaccttcctattgtg |
503 |
Q |
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| T |
8516038 |
tttcagaaacatatctagttaatgaaagttagtttatatctgtcacctgcgattacatggaccttcctattgtg |
8515965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 8516432 - 8516379
Alignment:
| Q |
80 |
attcaaagagcttacattcttacatactattcttctaacaccttaacttacatt |
133 |
Q |
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| T |
8516432 |
attcaaagagcttacattcttacatactaatcttctaacaccttaacttacatt |
8516379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 8525439 - 8525369
Alignment:
| Q |
19 |
agaaaaaccacatatgattgcttgagatcaattcttaaagtgaaaatgaattgagtacataattcaaagag |
89 |
Q |
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| T |
8525439 |
agaaaaatcacataggattgtttgagatcaattcttatagtgaaaatgaattgagtgcataaatcaaagag |
8525369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 268 - 398
Target Start/End: Complemental strand, 55372230 - 55372100
Alignment:
| Q |
268 |
tcattggtttgaactccacatgtgactggtgcagtagctctcaatttcttcaagtaccaaataccagctccaattccaattgcccctgcagctgagaatg |
367 |
Q |
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| T |
55372230 |
tcattgctttgaaccccacatgttactggtgctttagctttcattttctttaagtaccaaatgccacctccaattccaagtgctccaaaagctgaaatag |
55372131 |
T |
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| Q |
368 |
ctgtaactgtccctgaaaccacaattccaaa |
398 |
Q |
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| T |
55372130 |
cagtaactgtccctgcagccagaattccaaa |
55372100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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