View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7704_high_9 (Length: 450)
Name: NF7704_high_9
Description: NF7704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7704_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 346
Target Start/End: Original strand, 4803415 - 4803759
Alignment:
| Q |
16 |
attagtaatacttattgttaacttcattatctatttatcacaaaaaccaatttcactctattagtattacgtttaaaaattattagtaatattatgtgtt |
115 |
Q |
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| T |
4803415 |
attagtaatacttattgttaacttcattatctatttatcacaaaaaccaatttcactctattagtattacgtttaaaaagtattagtaat-ttatgtgtt |
4803513 |
T |
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| Q |
116 |
ttgtgaaacatatgtatagcgatagctagccccacatgggacgtttgagaagcttagagatgtaaactaccattataaataaataaagtgta-------- |
207 |
Q |
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| T |
4803514 |
ctgtgaaacatatttatagcgatagctagccccacatgggacgtttgagaagcttagagatgtaaactaccattataaataaataaagtgtagaacacaa |
4803613 |
T |
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| Q |
208 |
-------gaacacagaagtgagatgttattagaaaaatgcaatgcggcattgtgactttagacttttaaaagggaattgtgtgtgacagtcttaacgttt |
300 |
Q |
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| T |
4803614 |
tgttatcgaacacagaagtgagatgttattagaaaaatgctatgcggcattgtgactttagacttttaaaagggaattgtgtgtgacagtcttaacgttt |
4803713 |
T |
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| Q |
301 |
gcttagagttgcaaaagggatattcagcaacttctggtaaaccatt |
346 |
Q |
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| T |
4803714 |
gcttagagttgcaaaagggatattcagcaacttctggtaaaccatt |
4803759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 320 - 450
Target Start/End: Original strand, 4806193 - 4806321
Alignment:
| Q |
320 |
atattcagcaacttctggtaaaccattacacatacaaatgaaaaccaggttcaatatatctttttgaaaccaagaaccaccgaaaaccgacacttgcatt |
419 |
Q |
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| T |
4806193 |
atattcagcaacttctggtaaatcattacacacacaaatgaaaaccaggtt-aatatatcttttcggaagaaagaaccacc-aaaaccgacgtttgcatt |
4806290 |
T |
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| Q |
420 |
caagaacttcggtctgattcttgtgtcggta |
450 |
Q |
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| T |
4806291 |
caagaacttcagtctgattcttgtgtcggta |
4806321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 378 - 450
Target Start/End: Original strand, 4803760 - 4803832
Alignment:
| Q |
378 |
tctttttgaaaccaagaaccaccgaaaaccgacacttgcattcaagaacttcggtctgattcttgtgtcggta |
450 |
Q |
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| T |
4803760 |
tctttttgaaaccaagaaccaccgaaaaccgacacttgcattcaagaacttcggtctgattcttgtgtcggta |
4803832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 320 - 426
Target Start/End: Original strand, 4824146 - 4824251
Alignment:
| Q |
320 |
atattcagcaacttctggtaaaccattacacatacaaatgaaaaccaggttcaatatatctttttgaaaccaagaaccaccgaaaaccgacacttgcatt |
419 |
Q |
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| T |
4824146 |
atattcagaaacttctggtaaaacatgacactcacaaatgtaaaccaggttcaatatatccttttggaagcaaaaaccacc-aaaaacgatacttgcatt |
4824244 |
T |
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| Q |
420 |
caagaac |
426 |
Q |
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| T |
4824245 |
ctagaac |
4824251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 4798625 - 4798677
Alignment:
| Q |
146 |
cccacatgggacgtttgagaagcttagagatgtaaactaccattataaataaa |
198 |
Q |
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| T |
4798625 |
cccacatcggaagtttgagaaacttagagatgtaaactaccattataaataaa |
4798677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 197
Target Start/End: Original strand, 4825401 - 4825482
Alignment:
| Q |
115 |
tttgtgaaacatatgtatagcgatagctagccccacatgggacgtttgagaagcttagagatgtaaactaccattataaataa |
197 |
Q |
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| T |
4825401 |
tttgtgaaacatatgtagagcgataggttgtcccacatcggatgtttcagaagcatagaga-gtagaccaccattataaataa |
4825482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 397
Target Start/End: Original strand, 4819127 - 4819204
Alignment:
| Q |
320 |
atattcagcaacttctggtaaaccattacacatacaaatgaaaaccaggttcaatatatctttttgaaaccaagaacc |
397 |
Q |
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| T |
4819127 |
atattcagaaacttcaaataaaccattatacacgcaaatgtaaaccaggttcagtatatctttttggaagcaagaacc |
4819204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 4817795 - 4817835
Alignment:
| Q |
158 |
gtttgagaagcttagagatgtaaactaccattataaataaa |
198 |
Q |
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| T |
4817795 |
gtttgagaaacttagagatgtaaactactattataaataaa |
4817835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 4804812 - 4804864
Alignment:
| Q |
146 |
cccacatgggacgtttgagaagcttagagatgtaaactaccattataaataaa |
198 |
Q |
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||||||| ||| ||||||||| |||||||| | |||||| ||||||||||||| |
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| T |
4804812 |
cccacatcggatgtttgagaatcttagagaggcaaactatcattataaataaa |
4804864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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