View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7704_low_11 (Length: 490)
Name: NF7704_low_11
Description: NF7704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7704_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Complemental strand, 26914766 - 26914303
Alignment:
| Q |
1 |
gctttgatcatcatattgacatctttgcttttctcccacttcaaaatacctaataattattttagcggagttgctgcaaaaatccagtatcaaatcaaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26914766 |
gctttgatcatcatattgacatctttgcttttctcccacttcaaaatacctaataattattttagcggagttgctgcaaaaatccagtatcaaatcaaag |
26914667 |
T |
|
| Q |
101 |
ggcaatgagggaaggcttttagagttaattcaaaatcctgtgactcaacacttaccggtcaactcgcttaaaataggtgagtattataactaggcaatgg |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26914666 |
ggcaatgagggaaggctttttgagttaattcaaaatcctgtgactcaacacttaccggtcaactcgcttaaaataggtgagtattataactaggcaatgg |
26914567 |
T |
|
| Q |
201 |
tagaatgtcaatgtcttctgtgaagcgttttcttatgacgtgacactcttatgctgttgtaggtctttcgtttaactcgccaaagacagttaaaataagc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
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| T |
26914566 |
tagaatgtcaatgtcttctgtgaagcgttttcttatgacgtgacactcttatgctgttgtaggtctttcgtttaactcgccaaaggcagttaaaataaac |
26914467 |
T |
|
| Q |
301 |
gactttgttgctgctaactgtg------ataagagtcttgtatttgtggtaagcttttgcaagtctttatatacactttatagatgggattatttttgtt |
394 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
26914466 |
gactttgttgctgctaactgtgataatcataagagtcttgtatttgtggtaagcttttgcaagtctttatatacactttacagatgggatcatttttgtt |
26914367 |
T |
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| Q |
395 |
atttcttgatcgaccgttgtctgcttcttcaggttggtgcaatggctcatggaaaagttgatgc |
458 |
Q |
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| T |
26914366 |
atttcttgatcgactgttgtctgcttcttcaggttgatgcaatggctcatggaaaagttgatgc |
26914303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 427 - 479
Target Start/End: Complemental strand, 26914310 - 26914258
Alignment:
| Q |
427 |
gttggtgcaatggctcatggaaaagttgatgctgactacattgatgatttcat |
479 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26914310 |
gttgatgcaatggctcatggaaaagttgatgctgactacattgatgatttcat |
26914258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 479
Target Start/End: Complemental strand, 51182510 - 51182043
Alignment:
| Q |
1 |
gctttgatcatcatattgacatctttgcttttctcccacttcaaaatacctaataattattttagcggagttgctgcaaaaatccagtatcaaatcaaag |
100 |
Q |
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|
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
51182510 |
gctttgatcatcatattgacatctttgcttttc-cccacttcaaaatacttaataattattttagtggagttgctgcaaaaatccagtatcaaatcaaag |
51182412 |
T |
|
| Q |
101 |
ggcaatgagggaaggcttttagagttaattcaaaatcctgtgactcaacacttaccggtcaactcgcttaaaataggtgagtattataactaggcaatgg |
200 |
Q |
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| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| |||||||||| |
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| T |
51182411 |
gacaatgagggaaagcttttaaagttaattcaaaatcctgtgactcaacacttacccgccaactcgcttaaaattggtgag---------taggcaatgg |
51182321 |
T |
|
| Q |
201 |
tagaatgtcaatgtcttctgtgaagcgttttcttatgacgtgacactcttatgctgttgtaggtctttcgtttaactcgccaaagacagttaaaataagc |
300 |
Q |
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|| ||||||||||||||| | || | ||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
51182320 |
tacaatgtcaatgtcttc-------attcttatgatgacgtcaaactcttatgctgttgtaggtctttcatttaactcgccaaagacagttaaaataaga |
51182228 |
T |
|
| Q |
301 |
gactttgttgctgctaactgtgataagagtcttgtatttgtggtaagcttttgcaagtctttata------tacactttatagatgggattatttttgtt |
394 |
Q |
| |
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||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||| |
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| T |
51182227 |
gacttcgttgctgctaactgtgataagaatcttgtatttgtggtaagcttttgcaagtctttatataatattacactttacagatgggatcatttttgtt |
51182128 |
T |
|
| Q |
395 |
atttcttgatcgaccgttgtctgcttcttcaggttggtgcaatggctcatggaaaagttgatgctgactacattgatgatttcat |
479 |
Q |
| |
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|||||||||| || ||||||||||||||||||||||||||||| |||||||||| ||||||| || ||||||||||||||||| |
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|
| T |
51182127 |
atttcttgattgaatgttgtctgcttcttcaggttggtgcaatgcctcatggaaatattgatgccgattacattgatgatttcat |
51182043 |
T |
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