View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7704_low_14 (Length: 409)
Name: NF7704_low_14
Description: NF7704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7704_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 4952400 - 4952010
Alignment:
| Q |
1 |
aagtctaataaaattctaaccatggttcctagagaaatcagaggagtcaattatctaactcctcctgagaattcattccaagttcaaccaaactttgtct |
100 |
Q |
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|||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4952400 |
aagtctaataaaattctagccatggttcctagtgagatcagaggagtcaattatctaactcctcctgagaattcattccaagttcaaccaaactttgtct |
4952301 |
T |
|
| Q |
101 |
taccacagaatgaaattccaaattaccatataaataatcttttaggcagcttaccaaacttccattacccatcatgtttaagcagcaactcaactacttc |
200 |
Q |
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| T |
4952300 |
taccacagaatgaaattccaaattaccatataaataatcttttaggcagcttaccaaacttccattacccatcatgtttaagcagcaactcaactacttc |
4952201 |
T |
|
| Q |
201 |
tgatgaagcagatgaacttcagtttaacatcatcgacgaaaggaagcaccgacgaatgatatcaaacagagaatcagctaggagatcaaggatgagaaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4952200 |
tgatgaagcagatgaacttcagtttaacatcatcgatgaaaggaagcaccgacgaatgatatcaaacagagaatcagctaggagatcaaggatgaggaaa |
4952101 |
T |
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| Q |
301 |
caaaaacacttggatgaactttggtcacaagtgatgaaactcagaactgaaaatcacaaccttgttgacaaactaaaccatgtgtctgagt |
391 |
Q |
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| T |
4952100 |
caaaaacacttggatgaactttggtcacaagtgatgaaactcagaactgaaaatcacaaccttgttgacaaactaaaccatgtgtctgagt |
4952010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 172 - 391
Target Start/End: Original strand, 10483443 - 10483662
Alignment:
| Q |
172 |
tcatgtttaagcagcaactcaactacttctgatgaagcagatgaacttcagtttaacatcatcgacgaaaggaagcaccgacgaatgatatcaaacagag |
271 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
10483443 |
tcatgtttaagtagcaactcaactacttctgatgaagcagatgaacttcagttcaatatcatcgacgaaaggaagcaccgacgaatgatatcaaatagag |
10483542 |
T |
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| Q |
272 |
aatcagctaggagatcaaggatgagaaaacaaaaacacttggatgaactttggtcacaagtgatgaaactcagaactgaaaatcacaaccttgttgacaa |
371 |
Q |
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||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||| || |
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| T |
10483543 |
aatcagctaggagatcaaggatgaggaaacaaaagcacttagatgaactttggtcacaagtggtgagactcagaactgaaaatcataaccttgttgataa |
10483642 |
T |
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| Q |
372 |
actaaaccatgtgtctgagt |
391 |
Q |
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|||||||||||||||||||| |
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| T |
10483643 |
actaaaccatgtgtctgagt |
10483662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 10483249 - 10483415
Alignment:
| Q |
8 |
ataaaattctaaccatggttcctagagaaatcagaggagtcaattatctaactcctcctgagaattcattccaagttcaaccaaactttgtcttaccaca |
107 |
Q |
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||||||||||| ||||||||||||| || || ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| || ||||| |
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| T |
10483249 |
ataaaattctagccatggttcctagtgagatgagaggagtcaattatctaactcctcttgagaattcattccatgttcaaccaaactttgtattgccaca |
10483348 |
T |
|
| Q |
108 |
gaatgaaattccaaattaccatataaataatcttttaggcagcttaccaaacttccattacccatca |
174 |
Q |
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|||||||||||||||||||||| ||| |||| ||||||| | |||||||||||||||||||||||| |
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| T |
10483349 |
gaatgaaattccaaattaccatctaagtaatattttaggtactttaccaaacttccattacccatca |
10483415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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