View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7704_low_17 (Length: 358)

Name: NF7704_low_17
Description: NF7704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7704_low_17
NF7704_low_17
[»] chr5 (7 HSPs)
chr5 (70-338)||(26353510-26353778)
chr5 (71-328)||(9816314-9816571)
chr5 (1-71)||(7992131-7992201)
chr5 (1-69)||(28277000-28277068)
chr5 (1-72)||(28828240-28828311)
chr5 (15-71)||(34641234-34641290)
chr5 (1-56)||(10916861-10916916)
[»] chr3 (19 HSPs)
chr3 (70-294)||(26648411-26648635)
chr3 (71-301)||(20014782-20015012)
chr3 (70-325)||(17115330-17115578)
chr3 (70-256)||(26654449-26654635)
chr3 (83-230)||(20006865-20007012)
chr3 (1-71)||(53208429-53208499)
chr3 (1-71)||(7323132-7323202)
chr3 (1-69)||(32130452-32130520)
chr3 (80-213)||(20032898-20033029)
chr3 (6-73)||(9454917-9454984)
chr3 (5-71)||(7227372-7227438)
chr3 (82-223)||(20033036-20033177)
chr3 (3-73)||(50064162-50064232)
chr3 (108-249)||(19952486-19952627)
chr3 (164-222)||(19990590-19990648)
chr3 (79-181)||(19990652-19990753)
chr3 (14-71)||(1916122-1916179)
chr3 (1-71)||(12913018-12913088)
chr3 (264-325)||(20007037-20007098)
[»] chr1 (5 HSPs)
chr1 (71-305)||(1718433-1718667)
chr1 (1-70)||(47523963-47524032)
chr1 (1-71)||(5520592-5520662)
chr1 (14-71)||(50443734-50443791)
chr1 (1-45)||(43866484-43866528)
[»] chr6 (5 HSPs)
chr6 (1-72)||(13425441-13425512)
chr6 (1-61)||(23889796-23889856)
chr6 (1-61)||(18133656-18133716)
chr6 (7-73)||(10875632-10875698)
chr6 (2-71)||(25100779-25100848)
[»] chr4 (8 HSPs)
chr4 (1-71)||(16497453-16497523)
chr4 (1-69)||(2588236-2588304)
chr4 (1-69)||(5650486-5650554)
chr4 (1-71)||(49577305-49577375)
chr4 (1-71)||(39598852-39598922)
chr4 (1-73)||(4289820-4289892)
chr4 (1-72)||(11157121-11157192)
chr4 (37-69)||(5650450-5650482)
[»] chr2 (9 HSPs)
chr2 (1-71)||(25438585-25438655)
chr2 (1-70)||(44673457-44673526)
chr2 (1-71)||(33391758-33391828)
chr2 (1-71)||(37154589-37154659)
chr2 (1-73)||(21005772-21005844)
chr2 (1-71)||(36536125-36536195)
chr2 (1-71)||(39573912-39573982)
chr2 (1-71)||(6537176-6537246)
chr2 (15-69)||(26377615-26377669)
[»] chr8 (10 HSPs)
chr8 (1-69)||(1548433-1548501)
chr8 (1-71)||(23033671-23033741)
chr8 (1-70)||(34784243-34784312)
chr8 (1-71)||(20901062-20901133)
chr8 (1-70)||(3117999-3118068)
chr8 (11-71)||(3277751-3277811)
chr8 (1-71)||(29168251-29168321)
chr8 (1-71)||(3376073-3376143)
chr8 (1-71)||(4946552-4946622)
chr8 (1-71)||(15660528-15660598)
[»] chr7 (8 HSPs)
chr7 (1-73)||(32775460-32775532)
chr7 (1-72)||(19886861-19886932)
chr7 (1-71)||(12858969-12859039)
chr7 (1-71)||(36167472-36167542)
chr7 (7-71)||(11599454-11599518)
chr7 (14-72)||(37065975-37066033)
chr7 (1-71)||(34379720-34379790)
chr7 (1-42)||(46082237-46082278)
[»] scaffold0302 (1 HSPs)
scaffold0302 (1-73)||(17380-17452)
[»] scaffold0325 (1 HSPs)
scaffold0325 (2-72)||(8636-8707)
[»] scaffold0604 (1 HSPs)
scaffold0604 (1-69)||(440-507)


Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 70 - 338
Target Start/End: Original strand, 26353510 - 26353778
Alignment:
Q  70 tgatggtggttgttgattcttcagaacactagtgaggagttgcctcaactcttcatccctcttctccttcgaatctattaaccgtaacatctcttcctgt 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26353510 tgatggtggttgttgattcttcagaacactagtgaggagttgcctcaactcttcatccctcttctccttcgaatctattaatcgtaacatctcttcctgt 26353609  T
Q  170 tgtcttgccagacgcctgagttcctcttgatccttcaagtattgctcttttaaccaaaccacaaattcatgatcactttcctttcttccttgtccttcag 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||     
T  26353610 tgtcttgccagacgcctgagttcctcttgatccttcaagtattgctcttttaaccaaaccacaagttcatgatcactttcttttcttccttgtccttcaa 26353709  T
Q  270 ccgtttctttagcttctgcttgagcagaaatatccgggcaaaactgaagatcttgctccgtaacagtta 338  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  26353710 ccgtttctttagcttctgcttgagcagaaatatccgggaaaaactgaagatcttgctccgtaacagtta 26353778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 71 - 328
Target Start/End: Complemental strand, 9816571 - 9816314
Alignment:
Q  71 gatggtggttgttgattcttcagaacactagtgaggagttgcctcaactcttcatccctcttctccttcgaatctattaaccgtaacatctcttcctgtt 170  Q
    |||||||||||||||||||| |||| ||||||||| || |||||||||||||||||||||||||||||| ||||||||||| | ||||||||||| ||||    
T  9816571 gatggtggttgttgattcttgagaaaactagtgagaagatgcctcaactcttcatccctcttctccttcaaatctattaactgaaacatctcttcttgtt 9816472  T
Q  171 gtcttgccagacgcctgagttcctcttgatccttcaagtattgctcttttaaccaaaccacaaattcatgatcactttcctttcttccttgtccttcagc 270  Q
    ||||||||| |||||| ||||||| |||||||||||||| |||||||||||||||||||| ||  |||||||||||||| |||||||||| | ||||| |    
T  9816471 gtcttgccaaacgcctaagttccttttgatccttcaagtgttgctcttttaaccaaaccagaacatcatgatcactttcttttcttcctttttcttcaac 9816372  T
Q  271 cgtttctttagcttctgcttgagcagaaatatccgggcaaaactgaagatcttgctcc 328  Q
    |  ||||| ||||||||| |||||||||||||| | || |||||||||||||||||||    
T  9816371 cacttcttcagcttctgcgtgagcagaaatatcagagcgaaactgaagatcttgctcc 9816314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 7992201 - 7992131
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattg 71  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7992201 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcatgactacattg 7992131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 28277000 - 28277068
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacat 69  Q
    |||||||||||| |||||||||||||||||||| | ||||||||||||||| |||  ||||||||||||    
T  28277000 tacgttcctcgtatttacgttctttcaccggccaatcgatcctacgtaggatctcaatcctgactacat 28277068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 28828240 - 28828311
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattga 72  Q
    |||||||| ||  ||||||| | |||||||||||| ||| ||||||||| ||||||||||||||||||||||    
T  28828240 tacgttccccgactttacgtcccttcaccggccgatcgaacctacgtagaaactcgttcctgactacattga 28828311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 34641290 - 34641234
Alignment:
Q  15 ttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattg 71  Q
    |||||| | |||||| ||||| ||| |||||||| ||||||||||||||||||||||    
T  34641290 ttacgtcccttcaccagccgatcgaacctacgtaagaactcgttcctgactacattg 34641234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 10916916 - 10916861
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcg 56  Q
    ||||||||||||||||| |||||||||||||||||   || |||||||||| ||||    
T  10916916 tacgttcctcgtgtttatgttctttcaccggccgattaattctacgtaggatctcg 10916861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 70 - 294
Target Start/End: Complemental strand, 26648635 - 26648411
Alignment:
Q  70 tgatggtggttgttgattcttcagaacactagtgaggagttgcctcaactcttcatccctcttctccttcgaatctattaaccgtaacatctcttcctgt 169  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| ||| |||    
T  26648635 tgatggtggttgttgattctttagaacactagtgaggagttgcctcaactcttcatccctcttctccttcaaatctattaactgaaacatcttttcttgt 26648536  T
Q  170 tgtcttgccagacgcctgagttcctcttgatccttcaagtattgctcttttaaccaaaccacaaattcatgatcactttcctttcttccttgtccttcag 269  Q
    ||||||||||| ||||||||||||||||| | |||||||||| ||||||||||| ||||||||| ||||||||||||||| || ||||||| | |||||     
T  26648535 tgtcttgccaggcgcctgagttcctcttggttcttcaagtatagctcttttaacaaaaccacaacttcatgatcactttctttccttcctttttcttcaa 26648436  T
Q  270 ccgtttctttagcttctgcttgagc 294  Q
    ||| ||||||||||| |||||||||    
T  26648435 ccgcttctttagcttgtgcttgagc 26648411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 71 - 301
Target Start/End: Original strand, 20014782 - 20015012
Alignment:
Q  71 gatggtggttgttgattcttcagaacactagtgaggagttgcctcaactcttcatccctcttctccttcgaatctattaaccgtaacatctcttcctgtt 170  Q
    ||||||||| |||||||||| |||| ||||||||| ||||| |||||||||||||||||||||  |||| |||| |||| |||||||||||| || ||||    
T  20014782 gatggtggtggttgattctttagaaaactagtgagaagttgtctcaactcttcatccctcttcatcttcaaatccattagccgtaacatctcatcttgtt 20014881  T
Q  171 gtcttgccagacgcctgagttcctcttgatccttcaagtattgctcttttaaccaaaccacaaattcatgatcactttcctttcttccttgtccttcagc 270  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||  |||||| |  ||||||||||||||| ||||||| || | ||||| |    
T  20014882 gtcttgccagaagcctgagttcctcttgattcttcaagtattgctcttttaagaaaaccaaagcttcatgatcactttcttttcttctttttacttcaac 20014981  T
Q  271 cgtttctttagcttctgcttgagcagaaata 301  Q
       |||||||| || |||||||| |||||||    
T  20014982 ttcttctttagattgtgcttgagtagaaata 20015012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 70 - 325
Target Start/End: Complemental strand, 17115578 - 17115330
Alignment:
Q  70 tgatggtggttgttgattcttcagaacactagtgaggagttgcctcaactcttcatccctcttctccttcgaatctattaaccgtaacatctcttcctgt 169  Q
    ||||||| |||| |||||| | ||||||||||||||||||||| |    |||||| |||||||||| ||| || | |||||| | |||||| |||| |||    
T  17115578 tgatggttgttgctgattccttagaacactagtgaggagttgcat----tcttcacccctcttctctttcaaagccattaactgaaacatcacttcatgt 17115483  T
Q  170 tgtcttgccagacgcctgagttcctcttgatccttcaagtattgctcttttaaccaaaccacaaattcatgatcactttcctttcttccttgtccttcag 269  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||| |  |||||||  |||||||||||||||   ||||||||  ||||||     
T  17115482 tgtcttgccagacgcctgagttcgtcttgattcttcaagtattgctcttttagcagaaccacattttcatgatcactttc---tcttcctttcccttcaa 17115386  T
Q  270 ccgtttctttagcttctgcttgagcagaaatatccgggcaaaactgaagatcttgc 325  Q
    | |||||  |||||||||||| |||||  ||||| | |  ||||||||||||||||    
T  17115385 ctgtttccatagcttctgctttagcagccatatcggagtgaaactgaagatcttgc 17115330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 70 - 256
Target Start/End: Complemental strand, 26654635 - 26654449
Alignment:
Q  70 tgatggtggttgttgattcttcagaacactagtgaggagttgcctcaactcttcatccctcttctccttcgaatctattaaccgtaacatctcttcctgt 169  Q
    ||||||||||||||||||| | |||||||||||||| |||||||||||||||||||| || |||||| || |||| ||||| |||||||||||||| |||    
T  26654635 tgatggtggttgttgattccttagaacactagtgagaagttgcctcaactcttcatctcttttctccctcaaatccattaaacgtaacatctcttcttgt 26654536  T
Q  170 tgtcttgccagacgcctgagttcctcttgatccttcaagtattgctcttttaaccaaaccacaaattcatgatcactttcctttctt 256  Q
    |||||||| |||||    | ||||||||||| |||||||   |||||||| ||  ||| ||||| ||||| ||| ||||| ||||||    
T  26654535 tgtcttgctagacgtgccatttcctcttgattcttcaagctatgctctttcaataaaatcacaacttcatcatctctttcttttctt 26654449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 83 - 230
Target Start/End: Original strand, 20006865 - 20007012
Alignment:
Q  83 tgattcttcagaacactagtgaggagttgcctcaactcttcatccctcttctccttcgaatctattaaccgtaacatctcttcctgttgtcttgccagac 182  Q
    |||||| | ||||||||||| ||||| || ||||||||||||||||||||||||  | || | |||| |  ||||||||| || |||||||||||||||     
T  20006865 tgattccttagaacactagtaaggaggtgtctcaactcttcatccctcttctcccacaaagccattacctctaacatctcctcttgttgtcttgccagat 20006964  T
Q  183 gcctgagttcctcttgatccttcaagtattgctcttttaaccaaacca 230  Q
    || ||||||||||||||| |||||||||||||||||||||| ||||||    
T  20006965 gcgtgagttcctcttgattcttcaagtattgctcttttaacaaaacca 20007012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 53208499 - 53208429
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattg 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53208499 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattg 53208429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 7323132 - 7323202
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattg 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7323132 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaacttgttcctgactacattg 7323202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 32130452 - 32130520
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacat 69  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  32130452 tacgttcctcgtgtttacgttctttcatcggccgaccgatcctacgtaggaactcgttcctgactacat 32130520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 80 - 213
Target Start/End: Original strand, 20032898 - 20033029
Alignment:
Q  80 tgttgattcttcagaacactagtgaggagttgcctcaactcttcatccctcttctccttcgaatctattaaccgtaacatctcttcctgttgtcttgcca 179  Q
    ||||||||| | ||||||||||  |||| |||||||||||||||||||||||||||| || ||   | ||| || || |||||||||||||||||||| |    
T  20032898 tgttgattccttagaacactag--aggatttgcctcaactcttcatccctcttctccctcaaagacaataatcgcaagatctcttcctgttgtcttgcta 20032995  T
Q  180 gacgcctgagttcctcttgatccttcaagtattg 213  Q
     | || ||||||||||||||| ||||||||||||    
T  20032996 catgcttgagttcctcttgattcttcaagtattg 20033029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 9454917 - 9454984
Alignment:
Q  6 tcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattgat 73  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||| | || ||||||||||||||||    
T  9454917 tcctcgtggttacgttttttcaccggccgaccgatcctacgtaggatcacgatcctgactacattgat 9454984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 7227372 - 7227438
Alignment:
Q  5 ttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattg 71  Q
    ||||||||||||||||||||||||||| |||| |||||||| ||||| |||| ||||||||||||||    
T  7227372 ttcctcgtgtttacgttctttcaccggacgactgatcctacataggatctcgatcctgactacattg 7227438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 82 - 223
Target Start/End: Original strand, 20033036 - 20033177
Alignment:
Q  82 ttgattcttcagaacactagtgaggagttgcctcaactcttcatccctcttctccttcgaatctattaaccgtaacatctcttcctgttgtcttgccaga 181  Q
    ||||||| | || |||||||| ||||||||||||||||||||||| ||||||||| || || | | |||||| || |||||||||||||| | | | | |    
T  20033036 ttgattccttaggacactagtaaggagttgcctcaactcttcatctctcttctccctcaaagccaataaccgcaagatctcttcctgttggcgtactaca 20033135  T
Q  182 cgcctgagttcctcttgatccttcaagtattgctcttttaac 223  Q
    ||   ||||||| |||||| |||||| | |||||||||||||    
T  20033136 cgtgcgagttccccttgattcttcaaatgttgctcttttaac 20033177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 50064162 - 50064232
Alignment:
Q  3 cgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattgat 73  Q
    |||||||||| ||||| ||| |||| |||||||| |||||||||||||| |||| ||||||||||||||||    
T  50064162 cgttcctcgtttttacattccttcagcggccgactgatcctacgtaggatctcgatcctgactacattgat 50064232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 108 - 249
Target Start/End: Complemental strand, 19952627 - 19952486
Alignment:
Q  108 gttgcctcaactcttcatccctcttctccttcgaatctattaaccgtaacatctcttcctgttgtcttgccagacgcctgagttcctcttgatccttcaa 207  Q
    |||||||||||||||||||  |||| ||| || || | ||||||||||| ||||| ||||| |||||| |||  |||   ||||| ||||||  ||||||    
T  19952627 gttgcctcaactcttcatctttcttttccctcaaagccattaaccgtaagatctcctcctgctgtcttcccaagcgcgctagttcttcttgaatcttcaa 19952528  T
Q  208 gtattgctcttttaaccaaaccacaaattcatgatcactttc 249  Q
    |||||| |||||| || ||||||| | ||||||||| |||||    
T  19952527 gtattggtcttttgacaaaaccacgacttcatgatccctttc 19952486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 19990648 - 19990590
Alignment:
Q  164 tcctgttgtcttgccagacgcctgagttcctcttgatccttcaagtattgctcttttaa 222  Q
    ||||||| ||||||||||||  ||||||||||||||| ||||||||||| |||||||||    
T  19990648 tcctgttctcttgccagacgtgtgagttcctcttgattcttcaagtatttctcttttaa 19990590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 79 - 181
Target Start/End: Complemental strand, 19990753 - 19990652
Alignment:
Q  79 ttgttgattcttcagaacactagtgaggagttgcctcaactcttcatccctcttctccttcgaatctattaaccgtaacatctcttcctgttgtcttgcc 178  Q
    |||||||||| | ||||||||||||||||| ||| | | | |||| |||||||||||| | |||| ||||||| |||| | |||||||||||||||| ||    
T  19990753 ttgttgattccttagaacactagtgaggagctgcttga-cacttcttccctcttctcccttgaatttattaactgtaagacctcttcctgttgtctttcc 19990655  T
Q  179 aga 181  Q
    |||    
T  19990654 aga 19990652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 1916122 - 1916179
Alignment:
Q  14 tttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattg 71  Q
    ||||||| | |||||||||| | ||| ||||||||| |||||||||||||||||||||    
T  1916122 tttacgtcccttcaccggccaatcgaacctacgtagaaactcgttcctgactacattg 1916179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 12913018 - 12913088
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattg 71  Q
    |||||||| ||  ||||||| | || ||||||| | ||| ||||||||| |||||||||||||||||||||    
T  12913018 tacgttccccgactttacgtcccttaaccggccaatcgaacctacgtagaaactcgttcctgactacattg 12913088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 325
Target Start/End: Original strand, 20007037 - 20007098
Alignment:
Q  264 cttcagccgtttctttagcttctgcttgagcagaaatatccgggcaaaactgaagatcttgc 325  Q
    ||||| |||||||||||||||||||||||||||  ||||| | |  ||||||||| ||||||    
T  20007037 cttcaaccgtttctttagcttctgcttgagcagccatatcagagtgaaactgaaggtcttgc 20007098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 71 - 305
Target Start/End: Complemental strand, 1718667 - 1718433
Alignment:
Q  71 gatggtggttgttgattcttcagaacactagtgaggagttgcctcaactcttcatccctcttctccttcgaatctattaaccgtaacatctcttcctgtt 170  Q
    |||| ||| ||||||||| ||| |||||||||||| ||||||||||||||||||||| ||||||||  | || | |||||||||||||||||||||||||    
T  1718667 gatgatggctgttgattcctcaaaacactagtgagtagttgcctcaactcttcatccttcttctcccacaaacccattaaccgtaacatctcttcctgtt 1718568  T
Q  171 gtcttgccagacgcctgagttcctcttgatccttcaagtattgctcttttaaccaaaccacaaattcatgatcactttcctttcttccttgtccttcagc 270  Q
    |||||||||||||   ||| |||||||||| ||||| | ||| |||||||||| |||||| || ||||| ||| ||| | |  ||| ||| | |||||||    
T  1718567 gtcttgccagacgtgcgagctcctcttgattcttcatgcattcctcttttaacaaaaccataacttcatcatctcttgcttccctttctttttcttcagc 1718468  T
Q  271 cgtttctttagcttctgcttgagcagaaatatccg 305  Q
     ||||||||||| |||||||||||||  |||||||    
T  1718467 tgtttctttagcgtctgcttgagcagccatatccg 1718433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 47523963 - 47524032
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacatt 70  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||    
T  47523963 tacgttccttgtgtttacgttctttcaccggccgaccgatcctacataggatctcgatcctgactacatt 47524032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 5520592 - 5520662
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattg 71  Q
    |||||||| ||  ||||||| | |||||| ||| | ||| ||||||||| |||||||||||||||||||||    
T  5520592 tacgttccccgactttacgtcccttcaccagccaatcgaacctacgtagaaactcgttcctgactacattg 5520662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 50443734 - 50443791
Alignment:
Q  14 tttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattg 71  Q
    ||||||| | |||||||||| | ||| ||||||||| ||||||||||| |||||||||    
T  50443734 tttacgtcccttcaccggccaatcgaacctacgtagaaactcgttccttactacattg 50443791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 43866484 - 43866528
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctac 45  Q
    ||||||||||||||||||||||||| |  |||||||| |||||||    
T  43866484 tacgttcctcgtgtttacgttctttaattggccgaccaatcctac 43866528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 13425512 - 13425441
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattga 72  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13425512 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattga 13425441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 23889856 - 23889796
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcct 61  Q
    |||||||||||||||| ||||||||||||||||||||| |||| ||||||| |||| ||||    
T  23889856 tacgttcctcgtgttttcgttctttcaccggccgaccggtcctccgtaggacctcgatcct 23889796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 18133716 - 18133656
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcct 61  Q
    |||||||||||||||| ||||| ||||||||||||||| |||| ||||||| |||| ||||    
T  18133716 tacgttcctcgtgttttcgttcattcaccggccgaccggtcctccgtaggacctcgatcct 18133656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 10875632 - 10875698
Alignment:
Q  7 cctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattgat 73  Q
    |||||||||||||||| | || ||||||||||| ||||||||||| |||| ||| ||| ||||||||    
T  10875632 cctcgtgtttacgttcctacatcggccgaccgaacctacgtaggatctcgatcccgaccacattgat 10875698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 25100848 - 25100779
Alignment:
Q  2 acgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattg 71  Q
    ||||||||||| |||| |||| |||||||||||||| |||||| |||||| || | |||| |||||||||    
T  25100848 acgttcctcgtttttatgttccttcaccggccgaccaatcctatgtaggatcttgatcctaactacattg 25100779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 16497523 - 16497453
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattg 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16497523 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattg 16497453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 2588304 - 2588236
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacat 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2588304 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacat 2588236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 5650554 - 5650486
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacat 69  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5650554 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctatgtaggaactcgttcctgactacat 5650486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 49577375 - 49577305
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattg 71  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| |||| || |||||||||||    
T  49577375 tacgttcctcgtgtttacattctttcaccggccgaccgatcctacgtaggatctcgatcatgactacattg 49577305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 39598922 - 39598852
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattg 71  Q
    |||||||||||||||||||||||||||| | |||||||||||||| ||||| |||| ||||||||||||||    
T  39598922 tacgttcctcgtgtttacgttctttcactgcccgaccgatcctacataggatctcgatcctgactacattg 39598852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 4289892 - 4289820
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattgat 73  Q
    ||||||||||||||||| ||||||||| ||||| ||||||||||||||||| |||| | ||||||||||||||    
T  4289892 tacgttcctcgtgtttaagttctttcaacggccaaccgatcctacgtaggatctcgatactgactacattgat 4289820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 11157121 - 11157192
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattga 72  Q
    |||||||| ||  ||||||| | |||||||||||| ||| ||||||||| ||||||||||||||||||||||    
T  11157121 tacgttccccgactttacgtcccttcaccggccgatcgaacctacgtagaaactcgttcctgactacattga 11157192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 5650482 - 5650450
Alignment:
Q  37 cgatcctacgtaggaactcgttcctgactacat 69  Q
    |||||||||||||||||||||||||||||||||    
T  5650482 cgatcctacgtaggaactcgttcctgactacat 5650450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 25438585 - 25438655
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattg 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25438585 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattg 25438655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 44673457 - 44673526
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacatt 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44673457 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacatt 44673526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 33391828 - 33391758
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattg 71  Q
    ||||||||||||||||||||||  ||||||||||||| |||||| |||||| || | ||||||||||||||    
T  33391828 tacgttcctcgtgtttacgttccatcaccggccgaccaatcctatgtaggatcttgatcctgactacattg 33391758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 37154659 - 37154589
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattg 71  Q
    |||||||||||||||||||||||||||||  || |||||| |||||||||| |||| || |||||||||||    
T  37154659 tacgttcctcgtgtttacgttctttcaccaaccaaccgattctacgtaggatctcgatcttgactacattg 37154589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 21005844 - 21005772
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattgat 73  Q
    |||||||| ||  ||||||| | |||||||||||| ||| ||||||||| |||||||||||||||||||||||    
T  21005844 tacgttccccgactttacgtcccttcaccggccgatcgaacctacgtagaaactcgttcctgactacattgat 21005772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 36536195 - 36536125
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattg 71  Q
    ||||| ||| |||||||| ||||||||| |||||||| ||||||||||||| |||| | ||||||||||||    
T  36536195 tacgtgccttgtgtttactttctttcactggccgaccaatcctacgtaggatctcgattctgactacattg 36536125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 39573982 - 39573912
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattg 71  Q
    |||||||| ||  ||||||| | |||||||||||| ||| ||||||||| |||||||||||||||||||||    
T  39573982 tacgttccccgactttacgtcccttcaccggccgatcgaacctacgtagaaactcgttcctgactacattg 39573912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 6537176 - 6537246
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattg 71  Q
    |||||||| ||  ||||||| | |||||| ||||| ||| |||||||| ||||||||||||||||||||||    
T  6537176 tacgttccccgactttacgtcccttcaccagccgatcgaacctacgtaagaactcgttcctgactacattg 6537246  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 26377615 - 26377669
Alignment:
Q  15 ttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacat 69  Q
    |||||||| ||||||||||||||||||||| ||| || |||| ||||||||||||    
T  26377615 ttacgttccttcaccggccgaccgatcctatgtacgatctcgatcctgactacat 26377669  T

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Target: chr8 (Bit Score: 69; Significance: 7e-31; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 1548433 - 1548501
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacat 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1548433 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacat 1548501  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 23033671 - 23033741
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattg 71  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23033671 tacgttcctcgtgtttacgttctttcaccggccgaccgaacctacgtaggaactcgttcctgactacattg 23033741  T

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Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 34784312 - 34784243
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacatt 70  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34784312 tacgttcctcgtgtttatgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacatt 34784243  T

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Target: chr8; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 20901062 - 20901133
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcg-ttcctgactacattg 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  20901062 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgtttcctgactacattg 20901133  T

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Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 3117999 - 3118068
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacatt 70  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  3117999 tacgttcctcgtgtttacgttctttcaccggccgaccaatcctatgtaggaactcgttcctgactacatt 3118068  T

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Target: chr8; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 3277751 - 3277811
Alignment:
Q  11 gtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattg 71  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3277751 gtgtttacgttctttcaccggccgaccgatcctaagtaggaactcgttcctgactacattg 3277811  T

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Target: chr8; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 29168321 - 29168251
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattg 71  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||| |||  ||||||||||||||    
T  29168321 tacgttcctcatgtttacgttctttcaccggccgaccgatcctatgtaggatctctatcctgactacattg 29168251  T

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Target: chr8; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 3376143 - 3376073
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattg 71  Q
    ||||||||||||||||||||||||||| |||| |||||| ||||||||||| || | ||||||||||||||    
T  3376143 tacgttcctcgtgtttacgttctttcatcggcggaccgaacctacgtaggatcttgatcctgactacattg 3376073  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 4946552 - 4946622
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattg 71  Q
    |||||||| ||  ||||||| | |||||| ||| | ||| ||||||||| |||||||||||||||||||||    
T  4946552 tacgttccccgactttacgtcccttcaccagccaatcgaacctacgtagaaactcgttcctgactacattg 4946622  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 15660528 - 15660598
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattg 71  Q
    |||||||| ||  ||||||| | |||||||||| | ||| |||| |||| |||||||||||||||||||||    
T  15660528 tacgttccccgactttacgtcccttcaccggccaatcgaacctatgtagaaactcgttcctgactacattg 15660598  T

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Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 32775460 - 32775532
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattgat 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32775460 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgcaggaactcgttcctgactacattgat 32775532  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 19886861 - 19886932
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattga 72  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  19886861 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgctggaactcgttcctgactacattga 19886932  T

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Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 12859039 - 12858969
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattg 71  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12859039 tacgttcctcatgtttacgttctttcaccggccgaccgatgctacgtaggaactcgttcctgactacattg 12858969  T

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Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 36167542 - 36167472
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattg 71  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  36167542 tacgttcctcgtgtttacattctttcaccggccaaccgatcctacgtaggaactcgttcctgactacattg 36167472  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 11599518 - 11599454
Alignment:
Q  7 cctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattg 71  Q
    |||||||||||||||| |||| ||||||||||| ||||||||||| |||| ||||||||||||||    
T  11599518 cctcgtgtttacgttccttcatcggccgaccgaacctacgtaggatctcgatcctgactacattg 11599454  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 37066033 - 37065975
Alignment:
Q  14 tttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattga 72  Q
    ||||||| | |||||||||| | ||| ||||||||| ||||||||||||||||||||||    
T  37066033 tttacgtcccttcaccggccaatcgaacctacgtagaaactcgttcctgactacattga 37065975  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 34379790 - 34379720
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattg 71  Q
    |||||||| ||  ||||||| | |||||||||| | ||| |||| |||| |||||||||||||||||||||    
T  34379790 tacgttccccgactttacgtcccttcaccggccaatcgaacctaagtagaaactcgttcctgactacattg 34379720  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 46082278 - 46082237
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcc 42  Q
    ||||||||| |||||||||||| ||||||||| |||||||||    
T  46082278 tacgttccttgtgtttacgttccttcaccggctgaccgatcc 46082237  T

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Target: scaffold0302 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 17380 - 17452
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattgat 73  Q
    ||||||||||||||||||||||||||||| |||| | |||||||||||||| |||| |||||| |||||||||    
T  17380 tacgttcctcgtgtttacgttctttcacctgccggcagatcctacgtaggatctcgatcctgattacattgat 17452  T

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Target: scaffold0325 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 8636 - 8707
Alignment:
Q  2 acgttcctcgtgttt-acgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacattga 72  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||| |||  |||||||||||||||    
T  8636 acgttcctcgtgttttacgttcgttcaccggccgaccgatcctacgtaggatctccatcctgactacattga 8707  T

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Target: scaffold0604 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 440 - 507
Alignment:
Q  1 tacgttcctcgtgtttacgttctttcaccggccgaccgatcctacgtaggaactcgttcctgactacat 69  Q
    ||||| |||||| ||||||||| | |||||||| | ||| |||||||||||||||||||||||||||||    
T  440 tacgtccctcgt-tttacgttcctacaccggccaatcgaacctacgtaggaactcgttcctgactacat 507  T

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