View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7704_low_18 (Length: 332)
Name: NF7704_low_18
Description: NF7704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7704_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 17 - 319
Target Start/End: Complemental strand, 29004596 - 29004294
Alignment:
| Q |
17 |
aatggtcaccaattacattgaattacacatcaggtacaacttcagaaccaaaaggtgttgtttatagtcacagaggagcttatttaagtactttgagttt |
116 |
Q |
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| T |
29004596 |
aatggtcaccaattacattgaattacacatcaggtacaacttcagaaccaaaaggtgttgtttatagtcacagaggagcttatttaagtactttgagttt |
29004497 |
T |
|
| Q |
117 |
aatccttggttgggaaatgggtagtgaaccagtttatctatggacattacctatgttccattgtaatggttggacattcacttggggtgtagctgcaaga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29004496 |
aatccttggttgggaaatgggtagtgaaccagtttatctatggacattacctatgttccattgtaatggttggacattcacttggggtgtagctgcaaga |
29004397 |
T |
|
| Q |
217 |
ggaggtacaaacatttgtatcagaaacactgcagcatctgatatatatagagctataaatctctataatgtgacacacatgtgttgcgcaccgatcattt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29004396 |
ggaggtacaaacatttgtatcagaaacactgcagcatctgatatatatagagctataaatctctataatgtgacacacatgtgttgcgcaccgatcattt |
29004297 |
T |
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| Q |
317 |
tca |
319 |
Q |
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||| |
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| T |
29004296 |
tca |
29004294 |
T |
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