View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7704_low_22 (Length: 264)

Name: NF7704_low_22
Description: NF7704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7704_low_22
NF7704_low_22
[»] chr3 (42 HSPs)
chr3 (1-251)||(23320550-23320800)
chr3 (1-114)||(1743439-1743553)
chr3 (2-117)||(8338937-8339053)
chr3 (1-112)||(32315109-32315219)
chr3 (2-113)||(40836181-40836291)
chr3 (9-114)||(26633361-26633465)
chr3 (2-45)||(26628095-26628138)
chr3 (2-114)||(33279586-33279698)
chr3 (2-45)||(48907362-48907405)
chr3 (56-114)||(40836424-40836482)
chr3 (2-114)||(3328813-3328926)
chr3 (2-46)||(22416525-22416569)
chr3 (66-114)||(36311152-36311200)
chr3 (56-123)||(3329059-3329126)
chr3 (2-45)||(4522145-4522188)
chr3 (2-45)||(28154952-28154995)
chr3 (1-44)||(31039048-31039091)
chr3 (2-45)||(32960713-32960756)
chr3 (2-45)||(36311342-36311385)
chr3 (56-114)||(25179578-25179636)
chr3 (56-114)||(30155389-30155447)
chr3 (56-114)||(33279830-33279888)
chr3 (66-123)||(3781134-3781191)
chr3 (1-45)||(13081084-13081128)
chr3 (56-116)||(22500840-22500900)
chr3 (66-118)||(25336354-25336406)
chr3 (1-45)||(26177026-26177070)
chr3 (59-91)||(33104965-33104997)
chr3 (2-45)||(8542801-8542844)
chr3 (169-251)||(16910774-16910857)
chr3 (56-111)||(22447990-22448045)
chr3 (169-251)||(24196968-24197051)
chr3 (2-45)||(25022733-25022776)
chr3 (2-45)||(46673117-46673160)
chr3 (61-91)||(1718224-1718254)
chr3 (56-114)||(10743409-10743467)
chr3 (56-114)||(48907537-48907595)
chr3 (66-123)||(3821138-3821195)
chr3 (2-43)||(23428691-23428732)
chr3 (4-45)||(25179769-25179810)
chr3 (66-114)||(13080894-13080942)
chr3 (1-45)||(26126976-26127020)
[»] scaffold0171 (1 HSPs)
scaffold0171 (6-116)||(9228-9339)
[»] chr1 (31 HSPs)
chr1 (2-111)||(21148138-21148248)
chr1 (3-114)||(16972043-16972154)
chr1 (5-112)||(18606687-18606793)
chr1 (2-114)||(4059522-4059635)
chr1 (2-114)||(24196452-24196565)
chr1 (2-113)||(16551645-16551756)
chr1 (1-111)||(4455045-4455156)
chr1 (56-114)||(18606929-18606987)
chr1 (2-115)||(2260377-2260491)
chr1 (2-116)||(19077924-19078038)
chr1 (2-116)||(19125814-19125928)
chr1 (56-112)||(26605281-26605337)
chr1 (2-45)||(27092922-27092965)
chr1 (56-119)||(28552300-28552363)
chr1 (2-113)||(43706655-43706767)
chr1 (2-45)||(48471933-48471976)
chr1 (2-116)||(3616990-3617104)
chr1 (3-44)||(22786219-22786260)
chr1 (56-116)||(43706899-43706959)
chr1 (1-44)||(28920727-28920770)
chr1 (5-48)||(29182067-29182110)
chr1 (2-45)||(47685292-47685335)
chr1 (56-114)||(3616799-3616857)
chr1 (56-118)||(9554418-9554480)
chr1 (56-114)||(14601738-14601796)
chr1 (56-118)||(16878931-16878993)
chr1 (4-114)||(21185396-21185506)
chr1 (56-114)||(28920897-28920955)
chr1 (56-113)||(50334719-50334776)
chr1 (66-114)||(24196261-24196309)
chr1 (66-114)||(24750025-24750073)
[»] chr7 (53 HSPs)
chr7 (1-111)||(3403055-3403165)
chr7 (10-114)||(39182133-39182237)
chr7 (2-111)||(10023789-10023898)
chr7 (6-119)||(24448040-24448151)
chr7 (2-125)||(15681821-15681945)
chr7 (3-114)||(27869196-27869307)
chr7 (2-123)||(33237407-33237526)
chr7 (2-111)||(19493509-19493617)
chr7 (3-48)||(9822167-9822212)
chr7 (3-48)||(10724092-10724137)
chr7 (2-112)||(13577789-13577899)
chr7 (2-46)||(5087187-5087231)
chr7 (2-114)||(42303337-42303450)
chr7 (2-114)||(8526986-8527098)
chr7 (2-45)||(11843248-11843291)
chr7 (1-46)||(6650700-6650745)
chr7 (3-114)||(25002899-25003009)
chr7 (2-119)||(31494101-31494219)
chr7 (56-116)||(24597761-24597821)
chr7 (2-46)||(36746572-36746616)
chr7 (2-45)||(21224422-21224465)
chr7 (2-116)||(10655520-10655634)
chr7 (56-114)||(19919847-19919905)
chr7 (56-114)||(26385263-26385321)
chr7 (1-46)||(5348218-5348263)
chr7 (8-45)||(7365420-7365457)
chr7 (61-114)||(9157297-9157350)
chr7 (56-117)||(17305761-17305822)
chr7 (1-46)||(17305955-17306000)
chr7 (5-111)||(19919607-19919713)
chr7 (66-111)||(23658777-23658822)
chr7 (6-46)||(15093820-15093860)
chr7 (1-45)||(19195283-19195327)
chr7 (56-116)||(19195459-19195519)
chr7 (56-124)||(20636609-20636677)
chr7 (2-114)||(20636810-20636922)
chr7 (56-124)||(20638481-20638549)
chr7 (2-46)||(42271523-42271567)
chr7 (66-106)||(43517168-43517208)
chr7 (3-43)||(44077942-44077982)
chr7 (2-41)||(2331204-2331243)
chr7 (61-116)||(6798161-6798216)
chr7 (6-86)||(9157059-9157138)
chr7 (56-111)||(18754512-18754567)
chr7 (56-103)||(20765995-20766042)
chr7 (59-114)||(21224601-21224656)
chr7 (2-45)||(24597586-24597628)
chr7 (6-45)||(41452319-41452358)
chr7 (2-45)||(48176033-48176076)
chr7 (1-111)||(26385451-26385562)
chr7 (56-114)||(44078117-44078174)
chr7 (66-114)||(2331274-2331322)
chr7 (66-114)||(6650544-6650592)
[»] chr4 (37 HSPs)
chr4 (2-116)||(4098848-4098962)
chr4 (1-114)||(20919335-20919448)
chr4 (2-114)||(13826420-13826532)
chr4 (1-114)||(43793631-43793745)
chr4 (1-114)||(24626222-24626334)
chr4 (1-114)||(36729089-36729202)
chr4 (2-115)||(35475480-35475593)
chr4 (66-125)||(4099045-4099104)
chr4 (56-119)||(2715961-2716024)
chr4 (3-111)||(4357444-4357552)
chr4 (2-48)||(6209306-6209352)
chr4 (2-116)||(13394534-13394649)
chr4 (2-116)||(13397673-13397788)
chr4 (67-125)||(17138540-17138598)
chr4 (65-117)||(52838228-52838280)
chr4 (56-111)||(6209487-6209542)
chr4 (2-41)||(15058892-15058931)
chr4 (2-45)||(27018405-27018448)
chr4 (56-114)||(9195908-9195966)
chr4 (10-125)||(9397390-9397503)
chr4 (56-114)||(18259357-18259415)
chr4 (56-116)||(25011733-25011793)
chr4 (56-112)||(41034880-41034936)
chr4 (66-117)||(4433438-4433488)
chr4 (2-45)||(5304417-5304460)
chr4 (2-45)||(6789028-6789071)
chr4 (2-45)||(19232413-19232456)
chr4 (2-45)||(25618698-25618741)
chr4 (56-114)||(5304591-5304649)
chr4 (1-43)||(15795507-15795549)
chr4 (67-116)||(4357250-4357299)
chr4 (58-91)||(27018240-27018273)
chr4 (66-123)||(41877280-41877337)
chr4 (66-114)||(2931321-2931369)
chr4 (66-114)||(3927666-3927714)
chr4 (67-111)||(20079151-20079195)
chr4 (66-114)||(35475291-35475339)
[»] chr2 (26 HSPs)
chr2 (1-114)||(30714275-30714388)
chr2 (2-114)||(18537829-18537941)
chr2 (8-111)||(36464469-36464572)
chr2 (2-115)||(15735255-15735368)
chr2 (2-114)||(15700938-15701050)
chr2 (2-114)||(21773333-21773444)
chr2 (10-114)||(25884178-25884282)
chr2 (1-105)||(12350201-12350305)
chr2 (3-114)||(28365702-28365813)
chr2 (56-114)||(9051273-9051331)
chr2 (56-122)||(15735056-15735122)
chr2 (4-121)||(9051021-9051139)
chr2 (2-46)||(4104893-4104937)
chr2 (2-46)||(9787750-9787794)
chr2 (2-115)||(38716384-38716497)
chr2 (2-45)||(22191236-22191279)
chr2 (3-45)||(2986878-2986920)
chr2 (56-114)||(30714520-30714578)
chr2 (56-114)||(38716194-38716252)
chr2 (2-45)||(11176098-11176141)
chr2 (2-41)||(22387141-22387180)
chr2 (5-44)||(26829160-26829199)
chr2 (56-114)||(6763963-6764021)
chr2 (56-114)||(11175907-11175965)
chr2 (56-114)||(18538074-18538132)
chr2 (65-111)||(21773514-21773560)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-113)||(455217-455331)
[»] chr8 (32 HSPs)
chr8 (2-114)||(33895564-33895677)
chr8 (7-114)||(18881504-18881611)
chr8 (1-114)||(23565279-23565393)
chr8 (56-108)||(15869343-15869395)
chr8 (2-114)||(19391388-19391500)
chr8 (2-41)||(18252960-18252999)
chr8 (2-44)||(22452244-22452286)
chr8 (1-46)||(7117183-7117228)
chr8 (1-114)||(8802400-8802514)
chr8 (2-46)||(1824795-1824839)
chr8 (2-46)||(1859240-1859284)
chr8 (2-114)||(4518869-4518980)
chr8 (2-114)||(5192272-5192384)
chr8 (2-45)||(21929917-21929960)
chr8 (2-112)||(3208171-3208281)
chr8 (3-45)||(21666344-21666386)
chr8 (56-114)||(21930047-21930105)
chr8 (4-46)||(31268472-31268514)
chr8 (1-46)||(4423099-4423144)
chr8 (56-113)||(32400325-32400382)
chr8 (56-120)||(8802645-8802709)
chr8 (2-86)||(38630246-38630331)
chr8 (56-111)||(5192517-5192572)
chr8 (56-111)||(38630058-38630113)
chr8 (3-45)||(12723331-12723373)
chr8 (56-114)||(19392812-19392870)
chr8 (56-114)||(22452419-22452477)
chr8 (66-116)||(33895373-33895423)
chr8 (66-115)||(30784520-30784569)
chr8 (66-114)||(4519123-4519171)
chr8 (56-116)||(12723507-12723567)
chr8 (67-111)||(22452176-22452220)
[»] chr6 (37 HSPs)
chr6 (6-113)||(16415334-16415441)
chr6 (2-114)||(26240148-26240261)
chr6 (7-46)||(34528344-34528383)
chr6 (1-110)||(14572182-14572292)
chr6 (56-116)||(18749374-18749434)
chr6 (2-45)||(31210985-31211028)
chr6 (2-114)||(34834116-34834228)
chr6 (2-45)||(35102561-35102604)
chr6 (56-114)||(2059066-2059124)
chr6 (56-114)||(23124932-23124990)
chr6 (2-120)||(25819875-25819994)
chr6 (1-123)||(32451916-32452039)
chr6 (1-46)||(2636968-2637013)
chr6 (56-113)||(4013911-4013968)
chr6 (66-114)||(18791358-18791406)
chr6 (66-114)||(31210794-31210842)
chr6 (3-46)||(4371084-4371127)
chr6 (2-45)||(18791548-18791591)
chr6 (2-41)||(22269597-22269636)
chr6 (2-45)||(24051199-24051242)
chr6 (56-115)||(24603360-24603419)
chr6 (3-46)||(24603553-24603596)
chr6 (1-44)||(24615764-24615807)
chr6 (56-115)||(26710553-26710612)
chr6 (8-46)||(12427430-12427468)
chr6 (3-45)||(20863798-20863840)
chr6 (8-46)||(22968225-22968263)
chr6 (8-46)||(23820130-23820168)
chr6 (56-114)||(24051009-24051067)
chr6 (67-116)||(2058832-2058881)
chr6 (66-115)||(22269409-22269458)
chr6 (5-45)||(2058904-2058944)
chr6 (8-48)||(3118876-3118916)
chr6 (67-115)||(8415305-8415353)
chr6 (57-101)||(19176812-19176856)
chr6 (1-41)||(23124794-23124834)
chr6 (56-116)||(25819683-25819743)
[»] scaffold0291 (1 HSPs)
scaffold0291 (1-114)||(10111-10227)
[»] scaffold0174 (1 HSPs)
scaffold0174 (1-45)||(29906-29950)
[»] scaffold0062 (2 HSPs)
scaffold0062 (2-114)||(49850-49962)
scaffold0062 (2-114)||(62389-62501)
[»] chr5 (33 HSPs)
chr5 (1-120)||(16307471-16307590)
chr5 (2-111)||(40428642-40428752)
chr5 (2-114)||(16900997-16901110)
chr5 (56-116)||(18695002-18695062)
chr5 (2-46)||(38476539-38476583)
chr5 (2-114)||(18695194-18695306)
chr5 (2-45)||(25556945-25556988)
chr5 (2-114)||(2373336-2373449)
chr5 (2-114)||(38408819-38408931)
chr5 (2-111)||(41663527-41663636)
chr5 (2-114)||(31055315-31055427)
chr5 (56-111)||(32466078-32466133)
chr5 (66-116)||(31576491-31576541)
chr5 (56-125)||(40428884-40428952)
chr5 (2-114)||(245785-245898)
chr5 (66-114)||(20654050-20654098)
chr5 (9-111)||(23039954-23040057)
chr5 (2-114)||(37961248-37961361)
chr5 (2-45)||(26639107-26639150)
chr5 (59-114)||(26639286-26639341)
chr5 (2-45)||(31648175-31648218)
chr5 (67-113)||(4800935-4800981)
chr5 (56-114)||(8645797-8645855)
chr5 (7-45)||(8645946-8645984)
chr5 (56-114)||(10293331-10293389)
chr5 (56-114)||(23765635-23765693)
chr5 (56-114)||(23815483-23815541)
chr5 (56-114)||(25557120-25557178)
chr5 (66-123)||(31648240-31648297)
chr5 (3-44)||(36641335-36641376)
chr5 (1-41)||(10293161-10293201)
chr5 (2-114)||(17825497-17825610)
chr5 (2-46)||(34125251-34125295)
[»] scaffold0419 (1 HSPs)
scaffold0419 (2-116)||(2959-3073)
[»] scaffold0406 (2 HSPs)
scaffold0406 (2-114)||(2182-2294)
scaffold0406 (56-116)||(1995-2055)
[»] scaffold0607 (1 HSPs)
scaffold0607 (2-114)||(2048-2162)
[»] scaffold0150 (1 HSPs)
scaffold0150 (2-114)||(6022-6134)
[»] scaffold0087 (1 HSPs)
scaffold0087 (2-45)||(25034-25077)
[»] scaffold0014 (1 HSPs)
scaffold0014 (1-113)||(112317-112429)
[»] scaffold1875 (1 HSPs)
scaffold1875 (3-45)||(826-868)
[»] scaffold0007 (1 HSPs)
scaffold0007 (2-116)||(250516-250631)
[»] scaffold0103 (1 HSPs)
scaffold0103 (1-46)||(2996-3041)
[»] scaffold1891 (1 HSPs)
scaffold1891 (56-103)||(818-865)
[»] scaffold0683 (1 HSPs)
scaffold0683 (6-45)||(5191-5230)
[»] scaffold0474 (1 HSPs)
scaffold0474 (56-91)||(7677-7712)
[»] scaffold0060 (2 HSPs)
scaffold0060 (2-45)||(66365-66408)
scaffold0060 (67-122)||(66174-66230)
[»] scaffold0025 (3 HSPs)
scaffold0025 (2-45)||(19473-19516)
scaffold0025 (2-45)||(62007-62050)
scaffold0025 (56-116)||(19283-19343)
[»] scaffold0001 (1 HSPs)
scaffold0001 (56-111)||(142192-142247)
[»] scaffold0187 (1 HSPs)
scaffold0187 (7-45)||(4943-4981)


Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 23320550 - 23320800
Alignment:
Q  1 tgtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnn-aataggggatcaaaatcgcaacattttaaaatttagtggtcgaa 99  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||| ||||||||||||    
T  23320550 tgtggcgtcttttcagcaattttgggacgaaaggggccaaaattgtaattttttttaataggggatcaaaatcgcaacattttaaaacttagtggtcgaa 23320649  T
Q  100 aagtgcagtttagccaataataaaaatttagtnnnnnnnncataataaattttgatgattggtatgttatttatgtgactcattactatgtgctgctaaa 199  Q
    ||||| || |||||||||||||||||||||||        |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23320650 aagtg-aggttagccaataataaaaatttagtaagaaaaacataataaattttgatgattggtacgttatttatgtgactcattactatgtgctgctaaa 23320748  T
Q  200 taattagacacaacccattgatctatttaaaagacaattagtgtgaacaaac 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23320749 taattagacacaacccattgatctatttaaaagacaattagtgtgaacaaac 23320800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 1743439 - 1743553
Alignment:
Q  1 tgtggcgtcttctcagcaattttgggacgaaaggggccaaaattg-taannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaa 99  Q
    |||||||||||||||||||||||| ||| |||||| | ||||||| ||        ||||||||| ||||||||||||||||||||| |||| |  ||||    
T  1743439 tgtggcgtcttctcagcaattttgtgacaaaagggactaaaattgctattttttataataggggaccaaaatcgcaacattttaaaacttagggagcgaa 1743538  T
Q  100 aagtgcagtttagcc 114  Q
    |||||||||||||||    
T  1743539 aagtgcagtttagcc 1743553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 117
Target Start/End: Complemental strand, 8339053 - 8338937
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg-taannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaa 100  Q
    |||||||||||||||||||||||||| ||| |||||||||||||  |        |||||||| |||||||||||||||||| |||  ||| || |||||    
T  8339053 gtggcgtcttctcagcaattttgggatgaagggggccaaaattgccattttttttaatagggggtcaaaatcgcaacattttgaaacatagggggcgaaa 8338954  T
Q  101 agtgcagtttagccaat 117  Q
    |||||| ||||||||||    
T  8338953 agtgcactttagccaat 8338937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 32315109 - 32315219
Alignment:
Q  1 tgtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaa 100  Q
    ||||||||||||||| ||||||||||||||||||  |||||||||| |       |||| ||||  |||||||||||||||||||| |||  || |||||    
T  32315109 tgtggcgtcttctcaacaattttgggacgaaaggacccaaaattgtcatttttttaata-gggacgaaaatcgcaacattttaaaacttaagggacgaaa 32315207  T
Q  101 agtgcagtttag 112  Q
    ||||||||||||    
T  32315208 agtgcagtttag 32315219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 113
Target Start/End: Complemental strand, 40836291 - 40836181
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaa 101  Q
    |||||| ||||||||||||||||| ||||||||||||||||| | |        ||||| ||| ||||||||||||||||||||| |||| || ||||||    
T  40836291 gtggcggcttctcagcaattttggaacgaaaggggccaaaatcgca-tttttttaatagaggaccaaaatcgcaacattttaaaacttaggggacgaaaa 40836193  T
Q  102 gtgcagtttagc 113  Q
    ||| ||||||||    
T  40836192 gtgtagtttagc 40836181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 26633465 - 26633361
Alignment:
Q  9 cttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagt 108  Q
    |||||| |||||||| ||||||||||||||||| | | |        |||||||| |||||||||||||||||||||| |||| || |||||||||||||    
T  26633465 cttctcggcaatttttggacgaaaggggccaaagtcgcattttttttaatagggggtcaaaatcgcaacattttaaaacttag-gggcgaaaagtgcagt 26633367  T
Q  109 ttagcc 114  Q
    ||||||    
T  26633366 ttagcc 26633361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 26628138 - 26628095
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  26628138 gtggcgtcttctcagcaattttgggatgaaaggggccaaaattg 26628095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 114
Target Start/End: Complemental strand, 33279698 - 33279586
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaa 101  Q
    |||||||||||||||||||||| |||| ||||||| ||||||||  |       ||||||||   ||||||||||||||| |||| |||  || ||||||    
T  33279698 gtggcgtcttctcagcaatttttggaccaaaggggtcaaaattgccatttttttaataggggtctaaaatcgcaacatttcaaaacttaaagggcgaaaa 33279599  T
Q  102 gtgcagtttagcc 114  Q
    |||||||||||||    
T  33279598 gtgcagtttagcc 33279586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 48907405 - 48907362
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  48907405 gtggcgtcttctcagcaattttgggatgaaaggggccaaaattg 48907362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 40836424 - 40836482
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    |||||||| |||||||||||||||||||||| |||| || |||||| ||||||||||||    
T  40836424 aatagggggtcaaaatcgcaacattttaaaacttagggggcgaaaaatgcagtttagcc 40836482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 114
Target Start/End: Complemental strand, 3328926 - 3328813
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg-taannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaa 100  Q
    |||||||||||||||||||||| ||| ||||||||||||||||| ||        ||||||||  |||||| | |||||||| |||  ||| || |||||    
T  3328926 gtggcgtcttctcagcaatttttggatgaaaggggccaaaattgctattttttttaatagggggccaaaattgtaacattttgaaacatagggggcgaaa 3328827  T
Q  101 agtgcagtttagcc 114  Q
    ||||||||||||||    
T  3328826 agtgcagtttagcc 3328813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 22416525 - 22416569
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgt 46  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||    
T  22416525 gtggcgtcttctcaacaattttgggacgaagggggccaaaattgt 22416569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 36311200 - 36311152
Alignment:
Q  66 caaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    ||||||||||||||||||||| |||| || |||||||||||||||||||    
T  36311200 caaaatcgcaacattttaaaacttaggggacgaaaagtgcagtttagcc 36311152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 123
Target Start/End: Original strand, 3329059 - 3329126
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagccaataataaa 123  Q
    ||||||||  ||||||||||||||||| ||| |||| || ||||||||| ||||||||||| ||||||    
T  3329059 aatagggggccaaaatcgcaacattttgaaacttagagggcgaaaagtgaagtttagccaaaaataaa 3329126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 4522145 - 4522188
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    |||||||||||||||||||||| ||| |||||||||||||||||    
T  4522145 gtggcgtcttctcagcaattttaggatgaaaggggccaaaattg 4522188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 28154995 - 28154952
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    |||||||||||||||||||||| ||| |||||||||||||||||    
T  28154995 gtggcgtcttctcagcaatttttggatgaaaggggccaaaattg 28154952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 31039091 - 31039048
Alignment:
Q  1 tgtggcgtcttctcagcaattttgggacgaaaggggccaaaatt 44  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||    
T  31039091 tgtggcgtcttctcagcaatttttggacgaaagaggccaaaatt 31039048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 32960756 - 32960713
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    ||||||||||||||| |||||||||| |||||||||||||||||    
T  32960756 gtggcgtcttctcagtaattttgggatgaaaggggccaaaattg 32960713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 36311342 - 36311385
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    ||||| |||||||| |||||||||||||||||||||||||||||    
T  36311342 gtggcttcttctcaacaattttgggacgaaaggggccaaaattg 36311385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 25179636 - 25179578
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    ||||||||  ||||||||||||||||||||| |||| || ||||||||| |||||||||    
T  25179636 aatagggggccaaaatcgcaacattttaaaacttagagggcgaaaagtgaagtttagcc 25179578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 30155389 - 30155447
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    ||||||||||||||||||||||||||||||| |||| || |||||| |  |||||||||    
T  30155389 aataggggatcaaaatcgcaacattttaaaacttagagggcgaaaaataaagtttagcc 30155447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 33279830 - 33279888
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    |||||||| |||||||||||||||||||||| |||| || |||||||| |||| |||||    
T  33279830 aatagggggtcaaaatcgcaacattttaaaacttagggggcgaaaagttcagtctagcc 33279888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 3781134 - 3781191
Alignment:
Q  66 caaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagccaataataaa 123  Q
    |||||||| ||||||||||||||||   | |||||||||||||||||||||| |||||    
T  3781134 caaaatcgtaacattttaaaatttaagaggcgaaaagtgcagtttagccaattataaa 3781191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 13081084 - 13081128
Alignment:
Q  1 tgtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    ||||| ||||||||||||||||||||| ||| |||||||||||||    
T  13081084 tgtggagtcttctcagcaattttgggatgaagggggccaaaattg 13081128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 22500840 - 22500900
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagccaa 116  Q
    |||||||| ||||||| ||||||||||||||||||  ||  |||||||| |||||||||||    
T  22500840 aatagggggtcaaaattgcaacattttaaaatttaaagggtgaaaagtgaagtttagccaa 22500900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 25336406 - 25336354
Alignment:
Q  66 caaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagccaata 118  Q
    |||||| |||||||||| |||||||  || |||||||||||||||||||||||    
T  25336406 caaaattgcaacattttgaaatttaaggggcgaaaagtgcagtttagccaata 25336354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 26177070 - 26177026
Alignment:
Q  1 tgtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    |||||| |||||||||||||||||||||||||  |||||||||||    
T  26177070 tgtggcttcttctcagcaattttgggacgaaataggccaaaattg 26177026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 91
Target Start/End: Complemental strand, 33104997 - 33104965
Alignment:
Q  59 aggggatcaaaatcgcaacattttaaaatttag 91  Q
    |||||||||||||||||||||||||||||||||    
T  33104997 aggggatcaaaatcgcaacattttaaaatttag 33104965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 8542801 - 8542844
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    |||||||||||||||||||||||||| ||| || ||||||||||    
T  8542801 gtggcgtcttctcagcaattttgggatgaagggagccaaaattg 8542844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 251
Target Start/End: Original strand, 16910774 - 16910857
Alignment:
Q  169 tttatgtgac-tcattactatgtgctgctaaataattagacacaacccattgatctatttaaaagacaattagtgtgaacaaac 251  Q
    |||||||||| | ||||||||||| ||||||||   |||||||||| |||||||||| | || ||||||||| ||| |||||||    
T  16910774 tttatgtgaccttattactatgtgttgctaaatggatagacacaacacattgatctactgaagagacaattaatgtaaacaaac 16910857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 22447990 - 22448045
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagttta 111  Q
    ||||||||  |||||| |||||||||||||| |||| || ||||||||||||||||    
T  22447990 aatagggggccaaaattgcaacattttaaaacttagagggcgaaaagtgcagttta 22448045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 251
Target Start/End: Original strand, 24196968 - 24197051
Alignment:
Q  169 tttatgtgac-tcattactatgtgctgctaaataattagacacaacccattgatctatttaaaagacaattagtgtgaacaaac 251  Q
    |||||||||| | ||||||||||| ||||||||   |||||||||| |||||||||| | || ||||||||| ||| |||||||    
T  24196968 tttatgtgaccttattactatgtgttgctaaatggatagacacaacacattgatctactgaagagacaattaatgtaaacaaac 24197051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 25022776 - 25022733
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    ||||| |||||| ||||||||||||| |||||||||||||||||    
T  25022776 gtggcatcttctgagcaattttgggatgaaaggggccaaaattg 25022733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 46673160 - 46673117
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    ||||| |||||| ||||||||||||| |||||||||||||||||    
T  46673160 gtggcatcttctgagcaattttgggatgaaaggggccaaaattg 46673117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 91
Target Start/End: Complemental strand, 1718254 - 1718224
Alignment:
Q  61 gggatcaaaatcgcaacattttaaaatttag 91  Q
    |||||||||||||||||||||||||||||||    
T  1718254 gggatcaaaatcgcaacattttaaaatttag 1718224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 10743467 - 10743409
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    ||||||||  ||||||||||||||||||||| |||| || ||||||| | |||||||||    
T  10743467 aatagggggccaaaatcgcaacattttaaaacttagggggcgaaaagaggagtttagcc 10743409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 48907537 - 48907595
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    ||||||||  ||||||||||||||||| ||| |||| || ||||||||| |||||||||    
T  48907537 aatagggggccaaaatcgcaacattttgaaacttagagggcgaaaagtgaagtttagcc 48907595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 3821138 - 3821195
Alignment:
Q  66 caaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagccaataataaa 123  Q
    ||||||||||||||||| |||||||   | ||||||||||| |||||||||| |||||    
T  3821138 caaaatcgcaacattttcaaatttaagaggcgaaaagtgcattttagccaattataaa 3821195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 23428732 - 23428691
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaat 43  Q
    ||||| |||||| ||||||||||||| |||||||||||||||    
T  23428732 gtggcatcttctgagcaattttgggatgaaaggggccaaaat 23428691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 25179769 - 25179810
Alignment:
Q  4 ggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    |||||||||||||||||||||||| ||| ||||||| |||||    
T  25179769 ggcgtcttctcagcaattttgggatgaagggggccataattg 25179810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 13080942 - 13080894
Alignment:
Q  66 caaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    ||||||||||||||||| ||| |||| || ||||||||| |||||||||    
T  13080942 caaaatcgcaacattttgaaacttagagggcgaaaagtgaagtttagcc 13080894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 26127020 - 26126976
Alignment:
Q  1 tgtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    |||||||||||||||||||||||| ||||||   |||||||||||    
T  26127020 tgtggcgtcttctcagcaattttgcgacgaagtaggccaaaattg 26126976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 116
Target Start/End: Original strand, 9228 - 9339
Alignment:
Q  6 cgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnn-aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtg 104  Q
    |||||||| ||||||||||||||||||||||||||||||||||        ||||| ||||||||||||||||||||||||| ||| |||||||||| ||    
T  9228 cgtcttctaagcaattttgggacgaaaggggccaaaattgtaattttttttaatagcggatcaaaatcgcaacattttaaaacttattggtcgaaaattg 9327  T
Q  105 cagtttagccaa 116  Q
    | ||||||||||    
T  9328 ctgtttagccaa 9339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 111
Target Start/End: Original strand, 21148138 - 21148248
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnn-aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaa 100  Q
    ||||||| ||||||||| |||||||||||||||||||| ||||||||        ||||||||  |||||||||||||||||||||||||| ||||||||    
T  21148138 gtggcgttttctcagcagttttgggacgaaaggggccataattgtaattttttttaatagggggccaaaatcgcaacattttaaaatttaggggtcgaaa 21148237  T
Q  101 agtgcagttta 111  Q
    |||||||||||    
T  21148238 agtgcagttta 21148248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 16972043 - 16972154
Alignment:
Q  3 tggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaag 102  Q
    |||||| |||| ||||||||||| |||||| ||||||||||||| |       ||||||||   |||||||||||||||||||| |||| || |||||||    
T  16972043 tggcgttttcttagcaattttggaacgaaatgggccaaaattgtcatttttttaatagggggctaaaatcgcaacattttaaaacttagggggcgaaaag 16972142  T
Q  103 tgcagtttagcc 114  Q
    ||||||||||||    
T  16972143 tgcagtttagcc 16972154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 18606793 - 18606687
Alignment:
Q  5 gcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtg 104  Q
    |||||| ||||||||||  ||||||||||||||||||||||| |       ||||||||||| ||||| |||||||||||||||||  || |||||||||    
T  18606793 gcgtctgctcagcaattc-gggacgaaaggggccaaaattgtcatttttttaataggggatcgaaatcacaacattttaaaatttaaagggcgaaaagtg 18606695  T
Q  105 cagtttag 112  Q
    ||||||||    
T  18606694 cagtttag 18606687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 114
Target Start/End: Complemental strand, 4059635 - 4059522
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaa-nnnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaa 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||        ||||||||  ||||||||||||||||| |||  ||| || |||||    
T  4059635 gtggcgtcttctcagcaattttgggatgaaaggggccaaaattgcaattttttttaatagggggccaaaatcgcaacattttgaaacatagggggcgaaa 4059536  T
Q  101 agtgcagtttagcc 114  Q
    |||||| |||||||    
T  4059535 agtgcactttagcc 4059522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 24196452 - 24196565
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg-taannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaa 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||  |        ||||||||  |||||||||||||||||||||  |||  | |||||    
T  24196452 gtggcgtcttctcagcaatttttggacgaaaggggccaaaattgccattttttttaatagggggccaaaatcgcaacattttaaaacataggaggcgaaa 24196551  T
Q  101 agtgcagtttagcc 114  Q
    ||||||||||||||    
T  24196552 agtgcagtttagcc 24196565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 113
Target Start/End: Complemental strand, 16551756 - 16551645
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaa 101  Q
    ||||||||||||||||||||||||||||||||| |||||||||   |       ||||||||  |||||| |||||||||| ||| |||| || ||||||    
T  16551756 gtggcgtcttctcagcaattttgggacgaaaggtgccaaaattaccatttttttaatagggggccaaaattgcaacattttgaaacttagagggcgaaaa 16551657  T
Q  102 gtgcagtttagc 113  Q
    |||||| |||||    
T  16551656 gtgcagattagc 16551645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 4455156 - 4455045
Alignment:
Q  1 tgtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnn-aataggggatcaaaatcgcaacattttaaaatttagtggtcgaa 99  Q
    |||||| |||||||||||||||||||||||||  | ||||||||||||        |||| ||    |||||||||||||||||||| |||| |||||||    
T  4455156 tgtggcatcttctcagcaattttgggacgaaaaagaccaaaattgtaattttttttaataaggagctaaaatcgcaacattttaaaacttaggggtcgaa 4455057  T
Q  100 aagtgcagttta 111  Q
    ||||||||||||    
T  4455056 aagtgcagttta 4455045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 18606929 - 18606987
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    |||||||| |||||||| ||||||||||||| |||| |||||||||||| |||||||||    
T  18606929 aatagggggtcaaaatcacaacattttaaaacttaggggtcgaaaagtgtagtttagcc 18606987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 115
Target Start/End: Complemental strand, 2260491 - 2260377
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnn-aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaa 100  Q
    ||||||||||||||| |||||| | |||||| || ||||||||||||        |||| || | ||||||||||||||||||||| |||  ||||||||    
T  2260491 gtggcgtcttctcagtaattttagaacgaaatggaccaaaattgtaattttttttaataaggaaccaaaatcgcaacattttaaaacttaagggtcgaaa 2260392  T
Q  101 agtgcagtttagcca 115  Q
    |||||| ||||||||    
T  2260391 agtgcactttagcca 2260377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 116
Target Start/End: Complemental strand, 19078038 - 19077924
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaa 101  Q
    |||||||||||||||||||||| ||| |||||||||||||||||  |       |||||||||  |||||   ||||||||||||  ||| || ||||||    
T  19078038 gtggcgtcttctcagcaatttttggatgaaaggggccaaaattgccatttttttaataggggacaaaaattataacattttaaaacataggggacgaaaa 19077939  T
Q  102 gtgcagtttagccaa 116  Q
    ||| |||||||||||    
T  19077938 gtgtagtttagccaa 19077924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 116
Target Start/End: Complemental strand, 19125928 - 19125814
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaa 101  Q
    |||||||||||||||||||||| ||| |||||||||||||||||  |       |||||||||  |||||   ||||||||||||  ||| || ||||||    
T  19125928 gtggcgtcttctcagcaatttttggatgaaaggggccaaaattgccatttttttaataggggacaaaaattataacattttaaaacataggggacgaaaa 19125829  T
Q  102 gtgcagtttagccaa 116  Q
    ||| |||||||||||    
T  19125828 gtgtagtttagccaa 19125814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 26605337 - 26605281
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttag 112  Q
    ||||| ||||||||||||||||||||||||| |||| |||| ||||||||| |||||    
T  26605337 aatagaggatcaaaatcgcaacattttaaaacttaggggtcaaaaagtgcaatttag 26605281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 27092965 - 27092922
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    |||||||||||||||||||||||||| |||| ||||||||||||    
T  27092965 gtggcgtcttctcagcaattttgggatgaaatgggccaaaattg 27092922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 28552363 - 28552300
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagccaataa 119  Q
    ||||||||| ||||||||||||||||| ||| |||| || ||||||||||| ||||| ||||||    
T  28552363 aataggggaccaaaatcgcaacattttgaaacttagggggcgaaaagtgcactttagtcaataa 28552300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 113
Target Start/End: Complemental strand, 43706767 - 43706655
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg-taannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaa 100  Q
    ||||| |||||| ||||||||||||| ||||||||||||||||| ||        ||||||||  ||||||||||||||| | |||  ||| || |||||    
T  43706767 gtggcatcttctgagcaattttgggatgaaaggggccaaaattgctattttttttaatagggggccaaaatcgcaacattatgaaacatagggggcgaaa 43706668  T
Q  101 agtgcagtttagc 113  Q
    |||||||||||||    
T  43706667 agtgcagtttagc 43706655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 48471976 - 48471933
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    |||||||||||||||||||||||||| ||| |||||||||||||    
T  48471976 gtggcgtcttctcagcaattttgggatgaagggggccaaaattg 48471933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 116
Target Start/End: Original strand, 3616990 - 3617104
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaa 101  Q
    |||||||||||||||||||||| |||  ||||||||||||||||  |       ||||||||   ||||| |||||||||| |||  ||| || ||||||    
T  3616990 gtggcgtcttctcagcaatttttggataaaaggggccaaaattgctatttatttaatagggggcgaaaattgcaacattttgaaacatagggggcgaaaa 3617089  T
Q  102 gtgcagtttagccaa 116  Q
    ||| |||||||||||    
T  3617090 gtgaagtttagccaa 3617104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 22786219 - 22786260
Alignment:
Q  3 tggcgtcttctcagcaattttgggacgaaaggggccaaaatt 44  Q
    |||||||||||||||||||||| ||||||| |||||||||||    
T  22786219 tggcgtcttctcagcaattttgagacgaaatgggccaaaatt 22786260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 43706899 - 43706959
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagccaa 116  Q
    ||||||||  ||||||||||||||||||||| |||| || | ||||||| |||||||||||    
T  43706899 aatagggggccaaaatcgcaacattttaaaaattagggggcaaaaagtggagtttagccaa 43706959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 28920770 - 28920727
Alignment:
Q  1 tgtggcgtcttctcagcaattttgggacgaaaggggccaaaatt 44  Q
    ||||||||||||||||||||||| ||| |||||||| |||||||    
T  28920770 tgtggcgtcttctcagcaatttttggatgaaaggggtcaaaatt 28920727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 29182110 - 29182067
Alignment:
Q  5 gcgtcttctcagcaattttgggacgaaaggggccaaaattgtaa 48  Q
    |||||||||||||||||||| |||||||| ||||||||| ||||    
T  29182110 gcgtcttctcagcaattttgagacgaaagaggccaaaatagtaa 29182067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 47685292 - 47685335
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    |||||||||||| |||||||||||| |||||||||| |||||||    
T  47685292 gtggcgtcttcttagcaattttgggccgaaaggggcaaaaattg 47685335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 3616857 - 3616799
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    ||||||||  ||||||||||||||||| ||| |||| || ||||||||| |||||||||    
T  3616857 aatagggggccaaaatcgcaacattttgaaacttagagggcgaaaagtgaagtttagcc 3616799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 118
Target Start/End: Original strand, 9554418 - 9554480
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagccaata 118  Q
    |||||||||| |||| ||||||||||||||| |||| |  ||||||||||| |||| ||||||    
T  9554418 aataggggataaaaaacgcaacattttaaaacttagggagcgaaaagtgcaatttaaccaata 9554480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 14601738 - 14601796
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    |||||||| |||||||||||||||||||||| |||| ||  |||||  |||||||||||    
T  14601738 aatagggggtcaaaatcgcaacattttaaaacttagggggtgaaaaacgcagtttagcc 14601796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 118
Target Start/End: Original strand, 16878931 - 16878993
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagccaata 118  Q
    ||||||||| ||||||| ||||||||| ||| ||||  | ||||||||||||||||| |||||    
T  16878931 aataggggaccaaaatctcaacattttgaaacttaggtggcgaaaagtgcagtttagacaata 16878993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 21185396 - 21185506
Alignment:
Q  4 ggcgtcttctcagcaattttgggacgaaaggggccaaaattgt-aannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaag 102  Q
    |||| |||||||||||||||| | | ||||||||||||||||| ||       |||| ||| | ||||| | ||||||||||||||||  |||||||||     
T  21185396 ggcggcttctcagcaattttgagccaaaaggggccaaaattgtaaatttctttaataagggct-aaaattgtaacattttaaaatttaagggtcgaaaaa 21185494  T
Q  103 tgcagtttagcc 114  Q
    ||||||||||||    
T  21185495 tgcagtttagcc 21185506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 28920897 - 28920955
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    ||||||||  ||||||||||||||||| ||| |||| || ||||||||| |||||||||    
T  28920897 aatagggggccaaaatcgcaacattttgaaacttagggggcgaaaagtgaagtttagcc 28920955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 50334776 - 50334719
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagc 113  Q
    ||||||||  |||||| |||||||||||||| |||| || ||||||||| ||||||||    
T  50334776 aatagggggccaaaattgcaacattttaaaacttagggggcgaaaagtggagtttagc 50334719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 24196309 - 24196261
Alignment:
Q  66 caaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    ||||||||||||||||| ||| |||| || ||||||||| |||||||||    
T  24196309 caaaatcgcaacattttgaaacttagggggcgaaaagtggagtttagcc 24196261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 24750025 - 24750073
Alignment:
Q  66 caaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    |||||| ||||||||||||||  ||| || |||||||||||||||||||    
T  24750025 caaaattgcaacattttaaaacatagggggcgaaaagtgcagtttagcc 24750073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 53)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 3403165 - 3403055
Alignment:
Q  1 tgtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaattta-gtggtcgaa 99  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||       |||||||| |||||||||||||||||||||| | | | |||||||    
T  3403165 tgtggcgtctcctcaggaattttgggacgaaaggggccaaaattgtaa-ttttttaatagggggtcaaaatcgcaacattttaaaactcagggggtcgaa 3403067  T
Q  100 aagtgcagttta 111  Q
    ||||||||||||    
T  3403066 aagtgcagttta 3403055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 10 - 114
Target Start/End: Original strand, 39182133 - 39182237
Alignment:
Q  10 ttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtt 109  Q
    ||||||||||||||||||| ||||||||||||||||| |       |||||||| ||||||| |||||||||| ||| |||| || ||||||||||||||    
T  39182133 ttctcagcaattttgggacaaaaggggccaaaattgtcatttttttaatagggggtcaaaattgcaacatttttaaacttagggggcgaaaagtgcagtt 39182232  T
Q  110 tagcc 114  Q
    |||||    
T  39182233 tagcc 39182237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 111
Target Start/End: Complemental strand, 10023898 - 10023789
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaa 101  Q
    |||| |||||||||||||||||| ||| ||||||||||||||||  |       |||||||| ||||| ||||||||||||||||| ||| || ||||||    
T  10023898 gtggtgtcttctcagcaattttgagacaaaaggggccaaaattgacatttttttaatagggggtcaaactcgcaacattttaaaatatagggggcgaaaa 10023799  T
Q  102 gtgcagttta 111  Q
    ||||||||||    
T  10023798 gtgcagttta 10023789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 119
Target Start/End: Complemental strand, 24448151 - 24448040
Alignment:
Q  6 cgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgc 105  Q
    |||||||||||||||||||| ||||||||| ||||||| | |        ||||||||||||||||||||||||||||||| || | || ||||||||||    
T  24448151 cgtcttctcagcaattttggaacgaaagggaccaaaatcgca--ttttttaataggggatcaaaatcgcaacattttaaaacttggggggcgaaaagtgc 24448054  T
Q  106 agtttagccaataa 119  Q
    ||||||||| ||||    
T  24448053 agtttagcctataa 24448040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 125
Target Start/End: Original strand, 15681821 - 15681945
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaa-nnnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaa 100  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||        | |||| |  ||||||||||||||||| ||| |||| |||| |||    
T  15681821 gtggcgtcttctcataaattttgggacgaaaggggccaaaattgtaattttttttattaggaggccaaaatcgcaacattttgaaacttaggggtctaaa 15681920  T
Q  101 agtgcagtttagccaataataaaaa 125  Q
    |||||||||||||||| | ||||||    
T  15681921 agtgcagtttagccaaaattaaaaa 15681945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 114
Target Start/End: Complemental strand, 27869307 - 27869196
Alignment:
Q  3 tggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaag 102  Q
    ||||||||||||||||||||||||| ||| | |||||||||||| |       |||||||| |||||||||||||||||| |||  ||| || |||||||    
T  27869307 tggcgtcttctcagcaattttgggatgaaggaggccaaaattgtcatttttttaatagggggtcaaaatcgcaacattttgaaacatagggggcgaaaag 27869208  T
Q  103 tgcagtttagcc 114  Q
    |||| |||||||    
T  27869207 tgcactttagcc 27869196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 123
Target Start/End: Complemental strand, 33237526 - 33237407
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaa 101  Q
    |||||||||||||||||||||||||| ||||||| ||||||||| ||       ||||| | | |||||||||||||||||||||||||| ||  |||||    
T  33237526 gtggcgtcttctcagcaattttgggatgaaaggg-ccaaaattgcaatttttttaatagag-accaaaatcgcaacattttaaaatttagagggtgaaaa 33237429  T
Q  102 gtgcagtttagccaataataaa 123  Q
    || |||||||||| | ||||||    
T  33237428 gtacagtttagcctaaaataaa 33237407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 111
Target Start/End: Original strand, 19493509 - 19493617
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaa 101  Q
    |||||||||||||||| ||||||||| |||||||||||||||||  |       |||||||| |||||||||||||||||||||| |||  || ||||||    
T  19493509 gtggcgtcttctcagccattttgggatgaaaggggccaaaattgcta-ttttttaatagggggtcaaaatcgcaacattttaaaacttaaagggcgaaaa 19493607  T
Q  102 gtgcagttta 111  Q
     |||||||||    
T  19493608 atgcagttta 19493617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 9822212 - 9822167
Alignment:
Q  3 tggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaa 48  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  9822212 tggcgtcttctcagcaattttgggacgaaaggggctaaaattgtaa 9822167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 10724137 - 10724092
Alignment:
Q  3 tggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaa 48  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  10724137 tggcgtcttctcagcaattttgggacgaaaggggctaaaattgtaa 10724092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 13577899 - 13577789
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaa 101  Q
    |||||||||||||||||||||||||| |||||||||||||||||  |       ||||||||  ||||||||||||||||| |||  ||| |  ||| ||    
T  13577899 gtggcgtcttctcagcaattttgggatgaaaggggccaaaattgccatttttttaatagggggccaaaatcgcaacattttgaaacatagagagcgagaa 13577800  T
Q  102 gtgcagtttag 112  Q
    |||||||||||    
T  13577799 gtgcagtttag 13577789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 5087187 - 5087231
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgt 46  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  5087187 gtggcgtcttctcatcaattttgggacgaaaggggccaaaattgt 5087231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 42303337 - 42303450
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgt-aannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaa 100  Q
    |||| |||||||||||||||||| ||| ||||||||||||||||| |        ||||| ||| |||||||||||| |||| ||| |||| |||||| |    
T  42303337 gtggtgtcttctcagcaattttgagacaaaaggggccaaaattgtcatttttttaaatagaggaccaaaatcgcaactttttgaaacttaggggtcgaga 42303436  T
Q  101 agtgcagtttagcc 114  Q
    ||||||||||||||    
T  42303437 agtgcagtttagcc 42303450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 8526986 - 8527098
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaa 101  Q
    ||||| |||||||||||||||||||| |||  ||||||||||||  |       ||||||||  ||||||||||||||||| |||| ||| || ||||||    
T  8526986 gtggcatcttctcagcaattttgggatgaagagggccaaaattgccatttttttaatagggggccaaaatcgcaacattttgaaatatagggggcgaaaa 8527085  T
Q  102 gtgcagtttagcc 114  Q
    ||||| |||||||    
T  8527086 gtgcactttagcc 8527098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 11843291 - 11843248
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  11843291 gtggcgtcttctcagcaattttgggatgaaaggggccaaaattg 11843248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 6650700 - 6650745
Alignment:
Q  1 tgtggcgtcttctcagcaattttgggacgaaaggggccaaaattgt 46  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||    
T  6650700 tgtggcgtcttctcatcaattttgggacgaaaggggctaaaattgt 6650745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 25002899 - 25003009
Alignment:
Q  3 tggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaag 102  Q
    ||||||| ||| ||||| |||||||  ||||||||||||||||| |       |||| |||| ||||||||||||||||||||| |||| || |||||||    
T  25002899 tggcgtcctcttagcaactttgggataaaaggggccaaaattgtcatttttt-aataagggaccaaaatcgcaacattttaaaacttagggggcgaaaag 25002997  T
Q  103 tgcagtttagcc 114  Q
    | ||||||||||    
T  25002998 tacagtttagcc 25003009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 119
Target Start/End: Original strand, 31494101 - 31494219
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg-taannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaa 100  Q
    |||||||||||||||||||||| ||| |||||||||||||||||  |        ||||||||  ||||||||||||||||| |||  ||| |  |||||    
T  31494101 gtggcgtcttctcagcaattttaggatgaaaggggccaaaattgccattttttttaatagggggccaaaatcgcaacattttgaaacatagagtgcgaaa 31494200  T
Q  101 agtgcagtttagccaataa 119  Q
    | |||||||||||||||||    
T  31494201 aatgcagtttagccaataa 31494219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 24597761 - 24597821
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagccaa 116  Q
    ||||||||  ||||||||||||||||||||| |||| || ||||||||| |||||||||||    
T  24597761 aatagggggacaaaatcgcaacattttaaaacttagagggcgaaaagtgaagtttagccaa 24597821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 36746616 - 36746572
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgt 46  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||    
T  36746616 gtggcgtcttctcaacaattttgggatgaaaggggccaaaattgt 36746572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 21224465 - 21224422
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    |||||||||||||||||||||| ||| |||||||||||||||||    
T  21224465 gtggcgtcttctcagcaatttttggatgaaaggggccaaaattg 21224422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 116
Target Start/End: Original strand, 10655520 - 10655634
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg-taannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaa 100  Q
    ||||| |||||| ||||||||||||| ||||||||||||||||| ||        |||||||||  ||||| |||||||||| |||  ||| || |||||    
T  10655520 gtggcatcttctgagcaattttgggatgaaaggggccaaaattgctattttttttaataggggacaaaaattgcaacattttgaaacatagagg-cgaaa 10655618  T
Q  101 agtgcagtttagccaa 116  Q
    ||||||||||||||||    
T  10655619 agtgcagtttagccaa 10655634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 19919847 - 19919905
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    |||||||| |||||||||||||||||| ||| |||| || ||||||||| |||||||||    
T  19919847 aatagggggtcaaaatcgcaacattttgaaacttagagggcgaaaagtgaagtttagcc 19919905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 26385321 - 26385263
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    ||||||||| ||||| ||||| ||||| |||||||| || |||||||||||||||||||    
T  26385321 aataggggaccaaaaacgcaatattttgaaatttaggggacgaaaagtgcagtttagcc 26385263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 5348218 - 5348263
Alignment:
Q  1 tgtggcgtcttctcagcaattttgggacgaaaggggccaaaattgt 46  Q
    |||| |||||||||||||||||||||||||||| || |||||||||    
T  5348218 tgtgacgtcttctcagcaattttgggacgaaagaggtcaaaattgt 5348263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 7365420 - 7365457
Alignment:
Q  8 tcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  7365420 tcttctcagcaattttgggacgaaaagggccaaaattg 7365457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 114
Target Start/End: Original strand, 9157297 - 9157350
Alignment:
Q  61 gggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    |||||||||||| ||||||||| |||||||| || |||||| ||||||||||||    
T  9157297 gggatcaaaatcacaacattttgaaatttaggggacgaaaaatgcagtttagcc 9157350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 117
Target Start/End: Complemental strand, 17305822 - 17305761
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagccaat 117  Q
    ||||||||  ||||||||||||||||| ||| |||| || ||||||||| ||||||||||||    
T  17305822 aatagggggccaaaatcgcaacattttgaaacttagaggacgaaaagtgaagtttagccaat 17305761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 17305955 - 17306000
Alignment:
Q  1 tgtggcgtcttctcagcaattttgggacgaaaggggccaaaattgt 46  Q
    ||||||||||||||| ||||||||||| ||||||| ||||||||||    
T  17305955 tgtggcgtcttctcatcaattttgggatgaaagggcccaaaattgt 17306000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 19919713 - 19919607
Alignment:
Q  5 gcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtg 104  Q
    |||| |||||||||||||||||| ||| || ||||||||||  |       |||| |||  |||||||||||||||||||||| ||| || |||||||||    
T  19919713 gcgttttctcagcaattttgggatgaagggtgccaaaattgccatttttttaataaggggccaaaatcgcaacattttaaaatatagggggcgaaaagtg 19919614  T
Q  105 cagttta 111  Q
    || ||||    
T  19919613 cacttta 19919607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 23658822 - 23658777
Alignment:
Q  66 caaaatcgcaacattttaaaatttagtggtcgaaaagtgcagttta 111  Q
    ||||||||||||||||||||| |||| | |||||||||||||||||    
T  23658822 caaaatcgcaacattttaaaacttagggatcgaaaagtgcagttta 23658777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 15093860 - 15093820
Alignment:
Q  6 cgtcttctcagcaattttgggacgaaaggggccaaaattgt 46  Q
    |||||||||||||||||||| ||||||||| ||||||||||    
T  15093860 cgtcttctcagcaattttggaacgaaagggaccaaaattgt 15093820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 19195327 - 19195283
Alignment:
Q  1 tgtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    ||||||||||||||| ||||||| ||| |||||||||||||||||    
T  19195327 tgtggcgtcttctcaacaatttttggatgaaaggggccaaaattg 19195283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 19195459 - 19195519
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagccaa 116  Q
    |||||||| ||||||| |||||||||||||| |||| ||  |||||||| |||||||||||    
T  19195459 aatagggggtcaaaattgcaacattttaaaacttagagggtgaaaagtgaagtttagccaa 19195519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 20636677 - 20636609
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagccaataataaaa 124  Q
    ||||||||  ||||||||||||||||||||| |||| || | ||||||| ||||||||| | |||||||    
T  20636677 aatagggggccaaaatcgcaacattttaaaacttagagggcaaaaagtgaagtttagcctaaaataaaa 20636609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 20636810 - 20636922
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaa-taggggatcaaaatcgcaacattttaaaatttagtggtcgaaa 100  Q
    ||||||| |||||||||||||||||| ||| |||||||||||||  |       || |||||| |||||||||||||||||| |||  ||| || |||||    
T  20636810 gtggcgttttctcagcaattttgggatgaa-ggggccaaaattgccatttttttaaatagggggtcaaaatcgcaacattttgaaacatagggggcgaaa 20636908  T
Q  101 agtgcagtttagcc 114  Q
    |||||| |||||||    
T  20636909 agtgcactttagcc 20636922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 20638549 - 20638481
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagccaataataaaa 124  Q
    ||||||||  ||||||||||||||||||||| |||| || | ||||||| ||||||||| | |||||||    
T  20638549 aatagggggccaaaatcgcaacattttaaaacttagagggcaaaaagtgaagtttagcctaaaataaaa 20638481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 42271523 - 42271567
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgt 46  Q
    |||||||||||||||||||||| ||| ||| ||||||||||||||    
T  42271523 gtggcgtcttctcagcaattttcggatgaagggggccaaaattgt 42271567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 43517168 - 43517208
Alignment:
Q  66 caaaatcgcaacattttaaaatttagtggtcgaaaagtgca 106  Q
    ||||||||||||||||||||| ||||||| |||||||||||    
T  43517168 caaaatcgcaacattttaaaacttagtggacgaaaagtgca 43517208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 44077982 - 44077942
Alignment:
Q  3 tggcgtcttctcagcaattttgggacgaaaggggccaaaat 43  Q
    ||||||||||| ||||||||||||||||||||| |||||||    
T  44077982 tggcgtcttcttagcaattttgggacgaaagggaccaaaat 44077942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 2331204 - 2331243
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaa 41  Q
    |||||||||||||||||||||| ||| |||||||||||||    
T  2331204 gtggcgtcttctcagcaatttttggatgaaaggggccaaa 2331243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 6798161 - 6798216
Alignment:
Q  61 gggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagccaa 116  Q
    |||||||||||||||||||||||||||||||  | |||||| | || |||||||||    
T  6798161 gggatcaaaatcgcaacattttaaaatttagaaggcgaaaaatacaatttagccaa 6798216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 9157138 - 9157059
Alignment:
Q  6 cgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaa 86  Q
    ||||||||||||||||||| |||||||| | |||||||||| |       ||||||||  |||||||||||||||||||||    
T  9157138 cgtcttctcagcaattttgagacgaaagagaccaaaattgtcatttttttaatagggg-ccaaaatcgcaacattttaaaa 9157059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 18754512 - 18754567
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagttta 111  Q
    ||||||||| ||||||||||||||||| ||| |||| || ||||||||| ||||||    
T  18754512 aataggggaccaaaatcgcaacattttgaaacttagggggcgaaaagtggagttta 18754567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 20766042 - 20765995
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagt 103  Q
    |||| ||| |||||||||||||||||||||||||||||| | ||||||    
T  20766042 aatatggggtcaaaatcgcaacattttaaaatttagtggaccaaaagt 20765995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 114
Target Start/End: Original strand, 21224601 - 21224656
Alignment:
Q  59 aggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    ||||| |||||||||||||||||| ||| |||| || ||||||||| |||||||||    
T  21224601 agggggtcaaaatcgcaacattttgaaacttagagggcgaaaagtgaagtttagcc 21224656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 24597628 - 24597586
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    |||||||||||||||||||||||||| | |||||||||||||||    
T  24597628 gtggcgtcttctcagcaattttgggatg-aaggggccaaaattg 24597586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 41452358 - 41452319
Alignment:
Q  6 cgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    |||||||||||||||||| ||| |||||||||||||||||    
T  41452358 cgtcttctcagcaatttttggatgaaaggggccaaaattg 41452319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 48176076 - 48176033
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    ||||| |||||| ||||||||||||| |||||||||||||||||    
T  48176076 gtggcatcttctgagcaattttgggatgaaaggggccaaaattg 48176033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 26385451 - 26385562
Alignment:
Q  1 tgtggcgtcttctcagcaattttgggacgaaaggggccaaaattgt-aannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaa 99  Q
    ||||||||||| | ||||||||| |||| ||||||||||||||||| |        ||||||||  ||||||||||||||||| ||| |||| || |  |    
T  26385451 tgtggcgtcttattagcaattttaggacaaaaggggccaaaattgtcatttttataaatagggggccaaaatcgcaacattttgaaacttagggggcaga 26385550  T
Q  100 aagtgcagttta 111  Q
    ||||||||||||    
T  26385551 aagtgcagttta 26385562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #51
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 44078117 - 44078174
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    |||||||| ||||||||||||| |||||||| |||| || | |||||||||||||||||    
T  44078117 aatagggggtcaaaatcgcaacgttttaaaacttagaggac-aaaagtgcagtttagcc 44078174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #52
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 2331274 - 2331322
Alignment:
Q  66 caaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    |||||| ||||||||||||||  ||| || |||||||||||||||||||    
T  2331274 caaaattgcaacattttaaaacatagggggcgaaaagtgcagtttagcc 2331322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #53
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 6650592 - 6650544
Alignment:
Q  66 caaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    ||||||||||| ||||||||| |||| || |||| ||||||||||||||    
T  6650592 caaaatcgcaaaattttaaaacttagggggcgaacagtgcagtttagcc 6650544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 116
Target Start/End: Original strand, 4098848 - 4098962
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaa 101  Q
    |||||||||||||  ||||||||||||||||||||||| |||| |||       ||||| ||  ||||||||||||||||||||| |||| |||| ||||    
T  4098848 gtggcgtcttctcgtcaattttgggacgaaaggggccataattataaattttttaatagagggccaaaatcgcaacattttaaaacttagaggtcaaaaa 4098947  T
Q  102 gtgcagtttagccaa 116  Q
    |||||||||||||||    
T  4098948 gtgcagtttagccaa 4098962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 20919448 - 20919335
Alignment:
Q  1 tgtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaa 100  Q
    |||| |||||||||||||||||||||||||||   |||||||||||||       ||||| | | ||||||||||||||||| ||| |||| ||||||||    
T  20919448 tgtgacgtcttctcagcaattttgggacgaaactagccaaaattgtaatttttttaatagagaaccaaaatcgcaacattttgaaacttaggggtcgaaa 20919349  T
Q  101 agtgcagtttagcc 114  Q
    ||||||||||||||    
T  20919348 agtgcagtttagcc 20919335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 2 - 114
Target Start/End: Complemental strand, 13826532 - 13826420
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaa 101  Q
    |||||||||||||||||||||||||| |||||||||||||||||  |       |||||||| |||||||||||||||||| |||  ||| || ||||||    
T  13826532 gtggcgtcttctcagcaattttgggatgaaaggggccaaaattgccatttttttaatagggggtcaaaatcgcaacatttttaaacatagggggcgaaaa 13826433  T
Q  102 gtgcagtttagcc 114  Q
    ||||| |||||||    
T  13826432 gtgcactttagcc 13826420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 43793745 - 43793631
Alignment:
Q  1 tgtggcgtcttctcagcaattttgggacgaaaggggccaaaattg-taannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaa 99  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  |        ||||||||  |||||||||||||||||||||  ||| || ||||    
T  43793745 tgtggcgtcttctcagcaattttgggacgaaatgggccaaaattgccattttttttaatagggggccaaaatcgcaacattttaaaacatagggggcgaa 43793646  T
Q  100 aagtgcagtttagcc 114  Q
    |||||||||||||||    
T  43793645 aagtgcagtttagcc 43793631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 24626334 - 24626222
Alignment:
Q  1 tgtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaa 100  Q
    ||||| ||||||| | ||||||||||||||| |||||||||| ||| |       |||||||| |||||||||||||||||||||| |||| || |||||    
T  24626334 tgtggtgtcttcttaacaattttgggacgaatggggccaaaaatgtcatttttttaatagggg-tcaaaatcgcaacattttaaaacttagagggcgaaa 24626236  T
Q  101 agtgcagtttagcc 114  Q
    ||||||||||||||    
T  24626235 agtgcagtttagcc 24626222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 36729202 - 36729089
Alignment:
Q  1 tgtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaa 100  Q
    |||||||||||||||| |||||||||| |||||||||||||||| |||       |||||||| |||||||| ||||||||| ||| |||| |||| |||    
T  36729202 tgtggcgtcttctcagtaattttgggatgaaaggggccaaaattataatttttttaatagggggtcaaaatcacaacattttgaaacttaggggtccaaa 36729103  T
Q  101 agtgcagtttagcc 114  Q
    | ||||| ||||||    
T  36729102 attgcaggttagcc 36729089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 115
Target Start/End: Original strand, 35475480 - 35475593
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaa 101  Q
    |||||||||||||||||||||| ||| |||| ||||||||||||| |       | || |||| |||||||||||||||||||||  ||| || | ||||    
T  35475480 gtggcgtcttctcagcaattttaggatgaaatgggccaaaattgtcatttttttattaagggaccaaaatcgcaacattttaaaacataggggacaaaaa 35475579  T
Q  102 gtgcagtttagcca 115  Q
    ||||||||||||||    
T  35475580 gtgcagtttagcca 35475593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 66 - 125
Target Start/End: Original strand, 4099045 - 4099104
Alignment:
Q  66 caaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagccaataataaaaa 125  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||| || |||||    
T  4099045 caaaatcgcaacattttaaaatttagaggtcaaaaagtgcagtttagccaaaaaaaaaaa 4099104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 2715961 - 2716024
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagccaataa 119  Q
    ||||||||| |||||||||||||||||||||||||   |  |||||||||||||||||||||||    
T  2715961 aataggggaccaaaatcgcaacattttaaaatttaagagatgaaaagtgcagtttagccaataa 2716024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 111
Target Start/End: Original strand, 4357444 - 4357552
Alignment:
Q  3 tggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaag 102  Q
    ||||||||||||||||||||| | | ||| |||||||||||||  |       |||||||| |||||||||||||||||| |||| ||| || |||||||    
T  4357444 tggcgtcttctcagcaattttagaatgaagggggccaaaattgccatttttttaatagggggtcaaaatcgcaacattttgaaatatagggggcgaaaag 4357543  T
Q  103 tgcagttta 111  Q
    |||| ||||    
T  4357544 tgcacttta 4357552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 6209352 - 6209306
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaa 48  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||    
T  6209352 gtggtgtcttctcagcaattttggaacgaaaggggccaaaattgtaa 6209306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 116
Target Start/End: Complemental strand, 13394649 - 13394534
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgt-aannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaa 100  Q
    |||||||||||||||||||||| ||| ||| |||||||||||||| |        ||||||||   ||||||||||||||||||||  ||| || |||||    
T  13394649 gtggcgtcttctcagcaattttcggatgaagggggccaaaattgtcattttttttaatagggggctaaaatcgcaacattttaaaacatagggggcgaaa 13394550  T
Q  101 agtgcagtttagccaa 116  Q
    |||||| |||||||||    
T  13394549 agtgcactttagccaa 13394534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 116
Target Start/End: Complemental strand, 13397788 - 13397673
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg-taannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaa 100  Q
    |||||||||||||||||||||| ||| ||| ||||||||||||| ||        ||||||||   ||||||||||||||||||||  ||| || |||||    
T  13397788 gtggcgtcttctcagcaattttcggatgaagggggccaaaattgctattttttttaatagggggctaaaatcgcaacattttaaaacatagggggcgaaa 13397689  T
Q  101 agtgcagtttagccaa 116  Q
    |||||| |||||||||    
T  13397688 agtgcactttagccaa 13397673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 125
Target Start/End: Original strand, 17138540 - 17138598
Alignment:
Q  67 aaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagccaataataaaaa 125  Q
    |||||||||||||||||||| |||| || ||||||||| ||||||||||| ||||||||    
T  17138540 aaaatcgcaacattttaaaacttagggggcgaaaagtggagtttagccaaaaataaaaa 17138598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 52838280 - 52838228
Alignment:
Q  65 tcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagccaat 117  Q
    |||||||||||||||||||||| |||| || ||||||||| ||||||||||||    
T  52838280 tcaaaatcgcaacattttaaaacttagagggcgaaaagtgaagtttagccaat 52838228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 6209487 - 6209542
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagttta 111  Q
    ||||||||| ||||||||||||||||||||| |||| |||| ||||||||| ||||    
T  6209487 aataggggaccaaaatcgcaacattttaaaacttaggggtctaaaagtgcaattta 6209542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 15058931 - 15058892
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaa 41  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  15058931 gtggcgtcttctcagcaattttgggatgaaaggggccaaa 15058892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 27018405 - 27018448
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    |||||||||||||||||||||||||| |||| ||||||||||||    
T  27018405 gtggcgtcttctcagcaattttgggatgaaatgggccaaaattg 27018448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 9195908 - 9195966
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    ||||||||| ||||||||||||||||| |||||||| || |||||||||  ||||||||    
T  9195908 aataggggaccaaaatcgcaacattttgaaatttagggggcgaaaagtggtgtttagcc 9195966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 125
Target Start/End: Original strand, 9397390 - 9397503
Alignment:
Q  10 ttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtt 109  Q
    |||||| |||||||||||| |||||||||||| || | |       ||||||||  ||||||| ||||||||||||| |||| ||  |||||||||||||    
T  9397390 ttctcaacaattttgggactaaaggggccaaattt-tcatttttttaatagggggccaaaatcccaacattttaaaacttagggggtgaaaagtgcagtt 9397488  T
Q  110 tagccaataataaaaa 125  Q
    ||||||| ||||||||    
T  9397489 tagccaa-aataaaaa 9397503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 18259357 - 18259415
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    ||||||||  ||||||||||||||||| |||||||| || ||||||||| |||||||||    
T  18259357 aatagggggccaaaatcgcaacattttgaaatttagagggcgaaaagtgaagtttagcc 18259415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 25011793 - 25011733
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagccaa 116  Q
    ||||||||  ||||||||||||||||| ||| |||| || ||||||||| |||||||||||    
T  25011793 aatagggggccaaaatcgcaacattttgaaacttaggggacgaaaagtggagtttagccaa 25011733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 41034880 - 41034936
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttag 112  Q
    ||||||||| |||||| ||||||||||||||| ||| || |||||||| ||||||||    
T  41034880 aataggggaccaaaattgcaacattttaaaatataggggacgaaaagtacagtttag 41034936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 117
Target Start/End: Original strand, 4433438 - 4433488
Alignment:
Q  66 caaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagccaat 117  Q
    ||||||||||||||||||||| |||| || ||||||||| ||||||||||||    
T  4433438 caaaatcgcaacattttaaaacttag-gggcgaaaagtgaagtttagccaat 4433488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 5304460 - 5304417
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    ||||||||||||||||||||||| || ||| |||||||||||||    
T  5304460 gtggcgtcttctcagcaattttgcgatgaagggggccaaaattg 5304417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 6789071 - 6789028
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    |||||||||||| ||||||||||||| ||| |||||||||||||    
T  6789071 gtggcgtcttcttagcaattttgggatgaagggggccaaaattg 6789028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 19232456 - 19232413
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    ||||| |||||| ||||||||||||| |||||||||||||||||    
T  19232456 gtggcatcttctgagcaattttgggatgaaaggggccaaaattg 19232413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 25618741 - 25618698
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    |||||||||||||||||||||| ||| ||||||| |||||||||    
T  25618741 gtggcgtcttctcagcaatttttggatgaaagggaccaaaattg 25618698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 5304591 - 5304649
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    ||||| || |||||||||||||||||| ||| |||| || ||||||||| |||||||||    
T  5304591 aatagagggtcaaaatcgcaacattttgaaacttagagggcgaaaagtgaagtttagcc 5304649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 15795507 - 15795549
Alignment:
Q  1 tgtggcgtcttctcagcaattttgggacgaaaggggccaaaat 43  Q
    ||||||||||||||| ||||||||||||||||| ||| |||||    
T  15795507 tgtggcgtcttctcatcaattttgggacgaaagaggctaaaat 15795549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 4357299 - 4357250
Alignment:
Q  67 aaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagccaa 116  Q
    |||||||||||||||| ||| |||| || ||||||||| |||||||||||    
T  4357299 aaaatcgcaacattttgaaacttagagggcgaaaagtgaagtttagccaa 4357250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 91
Target Start/End: Complemental strand, 27018273 - 27018240
Alignment:
Q  58 taggggatcaaaatcgcaacattttaaaatttag 91  Q
    |||||| |||||||||||||||||||||||||||    
T  27018273 tagggggtcaaaatcgcaacattttaaaatttag 27018240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 41877280 - 41877337
Alignment:
Q  66 caaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagccaataataaa 123  Q
    ||||||||||||||||| ||| |||| || ||||||||| ||||||||| | ||||||    
T  41877280 caaaatcgcaacattttgaaacttagagggcgaaaagtgaagtttagcctaaaataaa 41877337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 2931369 - 2931321
Alignment:
Q  66 caaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    |||||| |||||||||||||| |||| || ||||||||| |||||||||    
T  2931369 caaaattgcaacattttaaaacttagagggcgaaaagtgaagtttagcc 2931321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 3927714 - 3927666
Alignment:
Q  66 caaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    ||||||||||||||||||||| |||| ||  |||||||||| |||||||    
T  3927714 caaaatcgcaacattttaaaagttagagggggaaaagtgcactttagcc 3927666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 20079195 - 20079151
Alignment:
Q  67 aaaatcgcaacattttaaaatttagtggtcgaaaagtgcagttta 111  Q
    |||||| ||||||||||||| |||| || ||||||||||||||||    
T  20079195 aaaatcacaacattttaaaacttagggggcgaaaagtgcagttta 20079151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 35475339 - 35475291
Alignment:
Q  66 caaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    ||||||||||||||||||||| |||| || |||||| || |||||||||    
T  35475339 caaaatcgcaacattttaaaacttagagggcgaaaaatgaagtttagcc 35475291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 30714388 - 30714275
Alignment:
Q  1 tgtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaa 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||  |       ||||||||  |||||||||||||||||||||  ||| || |||||    
T  30714388 tgtggcgtcttctcagcaattttgggatgaaaggggccaaaattgccatttttttaatagggggccaaaatcgcaacattttaaaacatagggggcgaaa 30714289  T
Q  101 agtgcagtttagcc 114  Q
    |||||| |||||||    
T  30714288 agtgcactttagcc 30714275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 2 - 114
Target Start/End: Complemental strand, 18537941 - 18537829
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaa 101  Q
    |||||||||||||||||||||| ||| |||||||||||||||||  |       ||||||||| |||||| ||||||||||||||  ||| || ||||||    
T  18537941 gtggcgtcttctcagcaatttttggatgaaaggggccaaaattgctatttttttaataggggaccaaaattgcaacattttaaaacataggggacgaaaa 18537842  T
Q  102 gtgcagtttagcc 114  Q
    |||||||||||||    
T  18537841 gtgcagtttagcc 18537829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 36464469 - 36464572
Alignment:
Q  8 tcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcag 107  Q
    ||||||||||||||||||||||||| || |||||||||| |       |||| |||||||||||||||||||||| ||| ||||  | ||||||||||||    
T  36464469 tcttctcagcaattttgggacgaaatggaccaaaattgtcatttttttaataagggatcaaaatcgcaacattttgaaacttaggaggcgaaaagtgcag 36464568  T
Q  108 ttta 111  Q
    ||||    
T  36464569 ttta 36464572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 115
Target Start/End: Original strand, 15735255 - 15735368
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaa 101  Q
    |||||||||||||| ||||||||||| |||||||||||||||||  |       || |||||| |||||| ||||||||||||||  ||| || ||||||    
T  15735255 gtggcgtcttctcaacaattttgggatgaaaggggccaaaattgccatttttttaaaaggggaccaaaattgcaacattttaaaacatagggggcgaaaa 15735354  T
Q  102 gtgcagtttagcca 115  Q
    ||| ||||||||||    
T  15735355 gtggagtttagcca 15735368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 15700938 - 15701050
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaa 101  Q
    ||||| |||||| ||||||||||||| |||||||||||||||||  |       ||||||||||||||||||||||||| | |||  ||| || ||||||    
T  15700938 gtggcatcttctgagcaattttgggatgaaaggggccaaaattgctattttttaaataggggatcaaaatcgcaacattatgaaacatagggggcgaaaa 15701037  T
Q  102 gtgcagtttagcc 114  Q
    ||||| |||||||    
T  15701038 gtgcactttagcc 15701050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 114
Target Start/End: Complemental strand, 21773444 - 21773333
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaa 101  Q
    ||||| |||||||| ||||||||||||||||||| |||||||||| |       || ||| |||||||||||||||||||||||| |||| || |  |||    
T  21773444 gtggcttcttctcaacaattttgggacgaaaggg-ccaaaattgtcatttttttaacaggagatcaaaatcgcaacattttaaaacttagggggcagaaa 21773346  T
Q  102 gtgcagtttagcc 114  Q
    |||||||||||||    
T  21773345 gtgcagtttagcc 21773333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 25884282 - 25884178
Alignment:
Q  10 ttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtt 109  Q
    ||||||||||||||||||||||| |||||||||||   |       ||||||||  ||||||||||||||||||||| |||| || ||||| ||||||||    
T  25884282 ttctcagcaattttgggacgaaaagggccaaaattaccatttttttaatagggggccaaaatcgcaacattttaaaacttagggggcgaaatgtgcagtt 25884183  T
Q  110 tagcc 114  Q
    |||||    
T  25884182 tagcc 25884178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 12350201 - 12350305
Alignment:
Q  1 tgtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaa 100  Q
    ||||||||||| |||| ||||||| |||||||||||  || |||||||       |||||| |  |||||||||||||||||||||||||  ||||||||    
T  12350201 tgtggcgtcttgtcagtaattttgagacgaaaggggtaaagattgtaatttttttaataggaggccaaaatcgcaacattttaaaatttacgggtcgaaa 12350300  T
Q  101 agtgc 105  Q
    |||||    
T  12350301 agtgc 12350305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 114
Target Start/End: Original strand, 28365702 - 28365813
Alignment:
Q  3 tggcgtcttctcagcaattttgggacgaaaggggccaaaattg-taannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaa 101  Q
    |||||||||||||||||||||||||||||||||| |||||||| |         |||| |||| |||||| |||||||||| ||| |||| |||||||||    
T  28365702 tggcgtcttctcagcaattttgggacgaaagggggcaaaattgattttttttttaataagggaccaaaattgcaacattttgaaacttag-ggtcgaaaa 28365800  T
Q  102 gtgcagtttagcc 114  Q
    |||||| ||||||    
T  28365801 gtgcagattagcc 28365813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 9051273 - 9051331
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    |||||||| |||||||||||||||||||||| |||| || ||||||||| |||||||||    
T  9051273 aatagggggtcaaaatcgcaacattttaaaacttagagggcgaaaagtgaagtttagcc 9051331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 15735122 - 15735056
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagccaataataa 122  Q
    ||||||||| ||||||||||||||||| ||| |||| || ||||||||| ||||||||| |||||||    
T  15735122 aataggggaccaaaatcgcaacattttgaaacttagagggcgaaaagtgaagtttagcctataataa 15735056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 121
Target Start/End: Complemental strand, 9051139 - 9051021
Alignment:
Q  4 ggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnn-aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaag 102  Q
    ||||||||||||||||||||| || ||| |||||||||||||  |        |||||||||||||||||||||||||||||||  |||  | ||||||     
T  9051139 ggcgtcttctcagcaattttgagatgaagggggccaaaattgccattttttttaataggggatcaaaatcgcaacattttaaaacataggaggcgaaaaa 9051040  T
Q  103 tgcagtttagccaataata 121  Q
    |||| ||||||||| ||||    
T  9051039 tgcactttagccaaaaata 9051021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 4104937 - 4104893
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgt 46  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||    
T  4104937 gtggcgtcttctcagcaattttgggacgaaatgggtcaaaattgt 4104893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 9787750 - 9787794
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgt 46  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||    
T  9787750 gtggcgtcttctcagcaatttttggatgaaaggggccaaaattgt 9787794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 115
Target Start/End: Original strand, 38716384 - 38716497
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaa 101  Q
    |||||||||||||||||||||| ||| |||||||||||||||||  |        ||||||| ||||||| |||||||||| |||  |||  |  |||||    
T  38716384 gtggcgtcttctcagcaatttttggatgaaaggggccaaaattgctattttttttatagggggtcaaaattgcaacattttgaaacataggaggtgaaaa 38716483  T
Q  102 gtgcagtttagcca 115  Q
    ||||||||||||||    
T  38716484 gtgcagtttagcca 38716497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 22191236 - 22191279
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    |||||| ||||||||||||||||||| |||||||||||||||||    
T  22191236 gtggcgccttctcagcaattttgggatgaaaggggccaaaattg 22191279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 2986878 - 2986920
Alignment:
Q  3 tggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    ||||||||||||||||||||||||| ||| |||||||||||||    
T  2986878 tggcgtcttctcagcaattttgggatgaagggggccaaaattg 2986920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 30714520 - 30714578
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    ||||||||  |||||| ||||||||||||||||||| || ||||||||| |||||||||    
T  30714520 aatagggggccaaaattgcaacattttaaaatttagagggcgaaaagtgaagtttagcc 30714578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 38716252 - 38716194
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    |||||||| |||||||||||||||||||||| |||| ||  |||||||| |||||||||    
T  38716252 aatagggggtcaaaatcgcaacattttaaaacttagagggtgaaaagtgaagtttagcc 38716194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 11176098 - 11176141
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    |||||||||||||||||||||||||| |||||||  ||||||||    
T  11176098 gtggcgtcttctcagcaattttgggatgaaagggatcaaaattg 11176141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 22387180 - 22387141
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaa 41  Q
    ||||||||||||||||||||||| ||||||||||| ||||    
T  22387180 gtggcgtcttctcagcaattttgagacgaaaggggtcaaa 22387141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 26829199 - 26829160
Alignment:
Q  5 gcgtcttctcagcaattttgggacgaaaggggccaaaatt 44  Q
    ||||||||||| |||||||| |||||||||||||||||||    
T  26829199 gcgtcttctcaacaattttgagacgaaaggggccaaaatt 26829160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 6763963 - 6764021
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    ||||||||| ||||||||||||||||| ||| |||| || |||||| || |||||||||    
T  6763963 aataggggaccaaaatcgcaacattttgaaacttagagggcgaaaaatgaagtttagcc 6764021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 11175965 - 11175907
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    ||||||||  ||||||||||||||||| ||| |||| || ||||||||| |||||||||    
T  11175965 aatagggggccaaaatcgcaacattttgaaacttagagggcgaaaagtgaagtttagcc 11175907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 18538074 - 18538132
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    ||||||||  ||||||||||||||||| ||| |||| || ||||||||| |||||||||    
T  18538074 aatagggggccaaaatcgcaacattttgaaacttagagggcgaaaagtgaagtttagcc 18538132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 111
Target Start/End: Original strand, 21773514 - 21773560
Alignment:
Q  65 tcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagttta 111  Q
    ||||||||||||||||||||||||||| |   |||||||||||||||    
T  21773514 tcaaaatcgcaacattttaaaatttagggagtgaaaagtgcagttta 21773560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 455217 - 455331
Alignment:
Q  1 tgtggcgtcttctcagcaattttgggacgaaaggggccaaaattgt--aannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcga 98  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||  ||       ||||||||  ||||||||||||||||| ||| |||| | ||||    
T  455217 tgtggcgtcttctcagcaattttgggatgaaaggggccgaaattgtaaaaaaaaattaatagggggccaaaatcgcaacattttgaaacttagggttcga 455316  T
Q  99 aaagtgcagtttagc 113  Q
    |||||||||||||||    
T  455317 aaagtgcagtttagc 455331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 33895564 - 33895677
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg-taannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaa 100  Q
    ||||||||||||||| |||||| ||| ||||||||||||||||| ||        ||||||||| |||||| ||||||||||||||| ||| || |||||    
T  33895564 gtggcgtcttctcagaaatttttggatgaaaggggccaaaattgctattttttttaataggggaccaaaattgcaacattttaaaatatagggggcgaaa 33895663  T
Q  101 agtgcagtttagcc 114  Q
    ||||||||||||||    
T  33895664 agtgcagtttagcc 33895677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 18881611 - 18881504
Alignment:
Q  7 gtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgca 106  Q
    ||||||||| ||||||||||||||| |||||||||||||  |       ||||||||  |||||||||||||||| |||| |||  |||||||||| |||    
T  18881611 gtcttctcaacaattttgggacgaagggggccaaaattgccatttttttaatagggggccaaaatcgcaacatttcaaaacttaagggtcgaaaagcgca 18881512  T
Q  107 gtttagcc 114  Q
    ||||||||    
T  18881511 gtttagcc 18881504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 23565279 - 23565393
Alignment:
Q  1 tgtggcgtcttctcagcaattttgggacgaaaggggccaaaattgt-aannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaa 99  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||| |        |||||||| ||||||| ||||||||||||||  ||| || ||||    
T  23565279 tgtggcgtcttctcagcaatttttggatgaaaggggccaaaattgtcattttttttaatagggggtcaaaattgcaacattttaaaacatagggggcgaa 23565378  T
Q  100 aagtgcagtttagcc 114  Q
    ||||  |||||||||    
T  23565379 aagtctagtttagcc 23565393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 15869395 - 15869343
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagt 108  Q
    ||||||||| |||||||||||||||||||||||||| || |||||||||||||    
T  15869395 aataggggaccaaaatcgcaacattttaaaatttagagggcgaaaagtgcagt 15869343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 114
Target Start/End: Complemental strand, 19391500 - 19391388
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg-taannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaa 100  Q
    |||||||||||||||||||||| ||| ||||||||||||||||| ||        ||||||||| |||||| |||||||||| |||  ||| || |||||    
T  19391500 gtggcgtcttctcagcaatttttggatgaaaggggccaaaattgctattttttttaataggggaccaaaattgcaacattttgaaacatag-gggcgaaa 19391402  T
Q  101 agtgcagtttagcc 114  Q
    ||||||||||||||    
T  19391401 agtgcagtttagcc 19391388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 18252999 - 18252960
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaa 41  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  18252999 gtggcgtcttctcagcaattttgggacgaaaggggccaaa 18252960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 22452286 - 22452244
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaatt 44  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  22452286 gtggcgtcttctcagcaattttgggacgaaatgggccaaaatt 22452244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 7117228 - 7117183
Alignment:
Q  1 tgtggcgtcttctcagcaattttgggacgaaaggggccaaaattgt 46  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||    
T  7117228 tgtggcgtcttctcagcagttttaggacgaaaggggccaaaattgt 7117183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 8802514 - 8802400
Alignment:
Q  1 tgtggcgtcttctcagcaattttgggacgaaaggggccaaaattg-taannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaa 99  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||  |        ||||||||  |||||||||||||||||||||  ||  || ||||    
T  8802514 tgtggcgtcttctcagcaattttgggatgaagggggccaaaattgccattttttttaatagggggccaaaatcgcaacattttaaaacatacgggacgaa 8802415  T
Q  100 aagtgcagtttagcc 114  Q
    ||||||| |||||||    
T  8802414 aagtgcactttagcc 8802400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 1824795 - 1824839
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgt 46  Q
    |||||||||||||| |||||||| |||||||||||||||||||||    
T  1824795 gtggcgtcttctcaacaattttgagacgaaaggggccaaaattgt 1824839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 1859240 - 1859284
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgt 46  Q
    |||||||||||||| |||||||| |||||||||||||||||||||    
T  1859240 gtggcgtcttctcaacaattttgagacgaaaggggccaaaattgt 1859284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 114
Target Start/End: Complemental strand, 4518980 - 4518869
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaa 101  Q
    |||||||||||||| |||||||| || ||| |||||||||||||  |       ||||||||  ||||||||||| |||||||||| ||| || ||||||    
T  4518980 gtggcgtcttctcaacaattttgagatgaa-ggggccaaaattgccatttttttaatagggggccaaaatcgcaatattttaaaatatagggggcgaaaa 4518882  T
Q  102 gtgcagtttagcc 114  Q
    ||||| |||||||    
T  4518881 gtgcactttagcc 4518869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 114
Target Start/End: Complemental strand, 5192384 - 5192272
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaa 101  Q
    |||||||||||||||||||||| |||  ||||||||||||||||  |       ||||||||  |||||| |||||||||| |||  ||| || ||||||    
T  5192384 gtggcgtcttctcagcaatttttggataaaaggggccaaaattgctatttatttaatagggggccaaaattgcaacattttgaaacatagggggcgaaaa 5192285  T
Q  102 gtgcagtttagcc 114  Q
    ||| |||||||||    
T  5192284 gtgaagtttagcc 5192272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 21929960 - 21929917
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    |||||||||||||||||||||||||| ||| |||||||||||||    
T  21929960 gtggcgtcttctcagcaattttgggatgaagggggccaaaattg 21929917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 3208171 - 3208281
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaa-taggggatcaaaatcgcaacattttaaaatttagtggtcgaaa 100  Q
    ||||||||||||||| |||||||||||||||| | |||||||||| |       || |||| |   ||||||||||| |||||||| |||| ||||||||    
T  3208171 gtggcgtcttctcagtaattttgggacgaaagag-ccaaaattgttatttttttaaataggaggctaaaatcgcaactttttaaaacttaggggtcgaaa 3208269  T
Q  101 agtgcagtttag 112  Q
    ||||||||||||    
T  3208270 agtgcagtttag 3208281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 21666386 - 21666344
Alignment:
Q  3 tggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    |||||||||||||||||||||| |||||| |||||||||||||    
T  21666386 tggcgtcttctcagcaattttgagacgaagggggccaaaattg 21666344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 21930047 - 21930105
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    |||||||| |||||||||||||||||| ||| |||| || ||||||||| |||||||||    
T  21930047 aatagggggtcaaaatcgcaacattttgaaacttagagggcgaaaagtgaagtttagcc 21930105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 31268472 - 31268514
Alignment:
Q  4 ggcgtcttctcagcaattttgggacgaaaggggccaaaattgt 46  Q
    |||||||||| ||||||||| ||||||||||||||||||||||    
T  31268472 ggcgtcttcttagcaattttaggacgaaaggggccaaaattgt 31268514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 4423144 - 4423099
Alignment:
Q  1 tgtggcgtcttctcagcaattttgggacgaaaggggccaaaattgt 46  Q
    |||||| |||||||||||||||||||||||| ||| ||||||||||    
T  4423144 tgtggcatcttctcagcaattttgggacgaaggggaccaaaattgt 4423099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 32400382 - 32400325
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagc 113  Q
    ||||||| |||||||||||||||||||||||  ||| || ||| ||||||||||||||    
T  32400382 aatagggaatcaaaatcgcaacattttaaaacatagagggcgagaagtgcagtttagc 32400325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 8802645 - 8802709
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagccaataat 120  Q
    ||||||||  ||||||||||||||||| ||| |||| || ||||||||  |||||||||||||||    
T  8802645 aatagggggccaaaatcgcaacattttgaaacttagagggcgaaaagtaaagtttagccaataat 8802709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 38630246 - 38630331
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg-taannnnnnnaataggggatcaaaatcgcaacattttaaaa 86  Q
    ||||||||||||||||||||||| || ||| |||||||||||||  |        |||||||| ||||||||||||||||||||||    
T  38630246 gtggcgtcttctcagcaattttgagatgaagggggccaaaattgccattttttttaatagggggtcaaaatcgcaacattttaaaa 38630331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 5192517 - 5192572
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagttta 111  Q
    ||||| ||| ||||||||||||||||||||| |||| || ||||||||| ||||||    
T  5192517 aatagaggaccaaaatcgcaacattttaaaacttagagggcgaaaagtgaagttta 5192572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 38630113 - 38630058
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagttta 111  Q
    ||||||||||||||||||||||||||| ||| |||| || |||||| || ||||||    
T  38630113 aataggggatcaaaatcgcaacattttgaaacttagagggcgaaaaatgaagttta 38630058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 12723373 - 12723331
Alignment:
Q  3 tggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    ||||||||||||||||||||| | | |||||||||||||||||    
T  12723373 tggcgtcttctcagcaatttttgcatgaaaggggccaaaattg 12723331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 19392812 - 19392870
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    ||||||||  ||||||||||||||||| ||| |||| || ||||||||| |||||||||    
T  19392812 aatagggggccaaaatcgcaacattttgaaacttagagggcgaaaagtgaagtttagcc 19392870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 22452419 - 22452477
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    ||||||||| ||||||||||| ||||| |||||||| || | ||||||| |||||||||    
T  22452419 aataggggaccaaaatcgcaatattttgaaatttagggggctaaaagtggagtttagcc 22452477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 33895423 - 33895373
Alignment:
Q  66 caaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagccaa 116  Q
    |||||| |||||||||||||| |||| || ||||||||| |||||||||||    
T  33895423 caaaattgcaacattttaaaacttagagggcgaaaagtgaagtttagccaa 33895373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 30784520 - 30784569
Alignment:
Q  66 caaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcca 115  Q
    ||||||||||||||||| ||| |||| || ||||||||| ||||||||||    
T  30784520 caaaatcgcaacattttgaaacttagagggcgaaaagtgaagtttagcca 30784569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 4519123 - 4519171
Alignment:
Q  66 caaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    ||||||||||||||||| ||| |||| || ||||||||| |||||||||    
T  4519123 caaaatcgcaacattttgaaacttagaggacgaaaagtgaagtttagcc 4519171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 12723507 - 12723567
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagccaa 116  Q
    ||||||||  ||||||||||||||||| ||| |||| || ||||||||| ||||| |||||    
T  12723507 aatagggggccaaaatcgcaacattttgaaacttagagggcgaaaagtgaagtttggccaa 12723567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 22452220 - 22452176
Alignment:
Q  67 aaaatcgcaacattttaaaatttagtggtcgaaaagtgcagttta 111  Q
    ||||| ||||||||||||||| ||| || ||||||||||||||||    
T  22452220 aaaattgcaacattttaaaatatagggggcgaaaagtgcagttta 22452176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 37)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 113
Target Start/End: Complemental strand, 16415441 - 16415334
Alignment:
Q  6 cgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgc 105  Q
    |||||||||||||||||||||||||||||| |||||||| | |       |||||| || |||||| ||||| |||||||||||||  |||||||| |||    
T  16415441 cgtcttctcagcaattttgggacgaaagggaccaaaattatcattttttaaataggagaccaaaatagcaactttttaaaatttaggagtcgaaaattgc 16415342  T
Q  106 agtttagc 113  Q
    ||||||||    
T  16415341 agtttagc 16415334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 26240148 - 26240261
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgt-aannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaa 100  Q
    ||||||||||||| ||| |||||| |||||| ||||||||||||| ||       ||||||||| ||||||||||||| ||| ||  ||| | |||||||    
T  26240148 gtggcgtcttctcggcagttttggaacgaaatgggccaaaattgtaaatttttttaataggggaccaaaatcgcaacactttgaaccttaatagtcgaaa 26240247  T
Q  101 agtgcagtttagcc 114  Q
    ||||||||||||||    
T  26240248 agtgcagtttagcc 26240261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 34528344 - 34528383
Alignment:
Q  7 gtcttctcagcaattttgggacgaaaggggccaaaattgt 46  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34528344 gtcttctcagcaattttgggacgaaaggggccaaaattgt 34528383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 14572292 - 14572182
Alignment:
Q  1 tgtggcgtcttctcagcaattttgggacgaaaggggccaaaattg-taannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaa 99  Q
    |||||| |||||||||||||||| ||| ||||||||||||||||| ||        ||||||||  |||||| ||||||||||||||  ||| || ||||    
T  14572292 tgtggcatcttctcagcaatttttggatgaaaggggccaaaattgctattttttttaatagggggccaaaattgcaacattttaaaacatagggggcgaa 14572193  T
Q  100 aagtgcagttt 110  Q
    |||||||||||    
T  14572192 aagtgcagttt 14572182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 18749374 - 18749434
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagccaa 116  Q
    |||||||| |||||||||||||||||| ||| |||| || ||||||||| |||||||||||    
T  18749374 aatagggggtcaaaatcgcaacattttgaaacttagagggcgaaaagtgaagtttagccaa 18749434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 31210985 - 31211028
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    |||| ||||||||||||||||||||| |||||||||||||||||    
T  31210985 gtggtgtcttctcagcaattttgggatgaaaggggccaaaattg 31211028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 34834116 - 34834228
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaa 101  Q
    |||||||||||||||||||||||||| |||  ||||||||||||  |       |||||| | |||||||||||| |||||||||  ||  || ||||||    
T  34834116 gtggcgtcttctcagcaattttgggatgaagtgggccaaaattgccatttttttaataggaggtcaaaatcgcaatattttaaaacataaggggcgaaaa 34834215  T
Q  102 gtgcagtttagcc 114  Q
    ||||| |||||||    
T  34834216 gtgcactttagcc 34834228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 35102604 - 35102561
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    |||||||||||||||||||||||||| ||| |||||||||||||    
T  35102604 gtggcgtcttctcagcaattttgggatgaagggggccaaaattg 35102561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 2059066 - 2059124
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    |||||||| ||||||||||||||||||||||||||| |  |||||| |||| |||||||    
T  2059066 aatagggggtcaaaatcgcaacattttaaaatttagggagcgaaaaatgcaatttagcc 2059124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 23124932 - 23124990
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    ||||||||| ||||||||||||||||||||||||||  |  |||||||||| |||||||    
T  23124932 aataggggaccaaaatcgcaacattttaaaatttaggaggtgaaaagtgcaatttagcc 23124990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 120
Target Start/End: Original strand, 25819875 - 25819994
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnn-aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaa 100  Q
    ||||||||||||||||||||||  ||  |||||||||||||||  ||        ||||||||  |||||| | ||||||||||||  ||| || |||||    
T  25819875 gtggcgtcttctcagcaattttttgataaaaggggccaaaattacaattttttttaatagggggccaaaattgtaacattttaaaacataggggacgaaa 25819974  T
Q  101 agtgcagtttagccaataat 120  Q
    ||||||||||||||||||||    
T  25819975 agtgcagtttagccaataat 25819994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 32451916 - 32452039
Alignment:
Q  1 tgtggcgtcttctcagcaattttgggacgaaaggggccaaaattg-taannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaa 99  Q
    ||||||||||||||| ||||||| ||| ||||||||||||||||| |         |||||||| ||||||| |||||||||| |||  ||| || | ||    
T  32451916 tgtggcgtcttctcaacaatttttggatgaaaggggccaaaattgtttttttttttaatagggggtcaaaattgcaacattttgaaacataggggacaaa 32452015  T
Q  100 aagtgcagtttagccaataataaa 123  Q
    ||||||||||||||| | ||||||    
T  32452016 aagtgcagtttagcctaaaataaa 32452039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 2636968 - 2637013
Alignment:
Q  1 tgtggcgtcttctcagcaattttgggacgaaaggggccaaaattgt 46  Q
    ||||||||||||||  ||||||| ||||||||||||||||||||||    
T  2636968 tgtggcgtcttctcttcaattttaggacgaaaggggccaaaattgt 2637013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 4013911 - 4013968
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagc 113  Q
    ||||||||  ||||||||||||||||| ||| |||| || ||||||||||||||||||    
T  4013911 aatagggggccaaaatcgcaacattttgaaacttaggggacgaaaagtgcagtttagc 4013968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 18791406 - 18791358
Alignment:
Q  66 caaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    ||||||||||||||||||||| |||| || ||||||||| |||||||||    
T  18791406 caaaatcgcaacattttaaaacttagagggcgaaaagtgaagtttagcc 18791358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 31210842 - 31210794
Alignment:
Q  66 caaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    ||||||||||||||||||||| |||| || ||||||||| |||||||||    
T  31210842 caaaatcgcaacattttaaaacttagagggcgaaaagtgaagtttagcc 31210794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 4371084 - 4371127
Alignment:
Q  3 tggcgtcttctcagcaattttgggacgaaaggggccaaaattgt 46  Q
    |||||| ||||||||||||||| || ||||||||||||||||||    
T  4371084 tggcgttttctcagcaattttgagatgaaaggggccaaaattgt 4371127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 18791548 - 18791591
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    |||||||||||||| ||||||||||| ||| |||||||||||||    
T  18791548 gtggcgtcttctcaacaattttgggatgaagggggccaaaattg 18791591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 22269597 - 22269636
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaa 41  Q
    |||||||||||||| |||||||| ||||||||||||||||    
T  22269597 gtggcgtcttctcaacaattttgagacgaaaggggccaaa 22269636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 24051199 - 24051242
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    |||||||||||||| ||||||||||| |||| ||||||||||||    
T  24051199 gtggcgtcttctcatcaattttgggatgaaatgggccaaaattg 24051242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 115
Target Start/End: Complemental strand, 24603419 - 24603360
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcca 115  Q
    ||||||||| ||||||||||||||||| ||| |||  || ||||||||| ||||||||||    
T  24603419 aataggggagcaaaatcgcaacattttgaaacttaaaggacgaaaagtgaagtttagcca 24603360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 46
Target Start/End: Original strand, 24603553 - 24603596
Alignment:
Q  3 tggcgtcttctcagcaattttgggacgaaaggggccaaaattgt 46  Q
    ||||||||||||||||||||||||| ||| ||||||||| ||||    
T  24603553 tggcgtcttctcagcaattttgggatgaagggggccaaagttgt 24603596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 24615807 - 24615764
Alignment:
Q  1 tgtggcgtcttctcagcaattttgggacgaaaggggccaaaatt 44  Q
    |||||||| |||||||||||||| ||||||||| ||||||||||    
T  24615807 tgtggcgttttctcagcaatttttggacgaaagaggccaaaatt 24615764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 26710553 - 26710612
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcca 115  Q
    ||||||||  ||||||||||||||||| ||| |||| || ||||||||| ||||||||||    
T  26710553 aatagggggccaaaatcgcaacattttgaaacttagagggcgaaaagtgaagtttagcca 26710612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 12427430 - 12427468
Alignment:
Q  8 tcttctcagcaattttgggacgaaaggggccaaaattgt 46  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  12427430 tcttctcagcaattttgcgacgaaagaggccaaaattgt 12427468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 20863840 - 20863798
Alignment:
Q  3 tggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    ||||||||||||||||||||||| |||||| ||||| ||||||    
T  20863840 tggcgtcttctcagcaattttggaacgaaaagggccgaaattg 20863798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 22968263 - 22968225
Alignment:
Q  8 tcttctcagcaattttgggacgaaaggggccaaaattgt 46  Q
    |||||| ||||||||||||| ||||||||||||||||||    
T  22968263 tcttctgagcaattttgggatgaaaggggccaaaattgt 22968225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 23820130 - 23820168
Alignment:
Q  8 tcttctcagcaattttgggacgaaaggggccaaaattgt 46  Q
    |||||| ||||||||||||| ||||||||||||||||||    
T  23820130 tcttctgagcaattttgggatgaaaggggccaaaattgt 23820168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 24051067 - 24051009
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    ||||||||  ||||||||||||||||| ||| |||| || ||||||||| |||||||||    
T  24051067 aatagggggccaaaatcgcaacattttgaaacttagagggcgaaaagtgaagtttagcc 24051009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 2058881 - 2058832
Alignment:
Q  67 aaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagccaa 116  Q
    ||||||||||||||||||||||||   | | |||||||||||||||||||    
T  2058881 aaaatcgcaacattttaaaatttacgaggcaaaaagtgcagtttagccaa 2058832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 22269458 - 22269409
Alignment:
Q  66 caaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcca 115  Q
    ||||||||||| ||||| ||| |||| || ||||||||||||||||||||    
T  22269458 caaaatcgcaatattttgaaacttagaggacgaaaagtgcagtttagcca 22269409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 2058944 - 2058904
Alignment:
Q  5 gcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    |||||||||||||||||||| |||||||  |||||||||||    
T  2058944 gcgtcttctcagcaattttgagacgaaaatggccaaaattg 2058904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 3118876 - 3118916
Alignment:
Q  8 tcttctcagcaattttgggacgaaaggggccaaaattgtaa 48  Q
    |||||| | ||||||||||| ||||||||||||||||||||    
T  3118876 tcttctgatcaattttgggatgaaaggggccaaaattgtaa 3118916  T

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Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 8415305 - 8415353
Alignment:
Q  67 aaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcca 115  Q
    |||||||||||||| |||||  ||| || ||||||||||||||||||||    
T  8415305 aaaatcgcaacattataaaacatagggggcgaaaagtgcagtttagcca 8415353  T

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Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 19176856 - 19176812
Alignment:
Q  57 ataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaa 101  Q
    |||||||||||||||||||||||||| ||| |||| || ||||||    
T  19176856 ataggggatcaaaatcgcaacattttcaaacttagggggcgaaaa 19176812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 23124834 - 23124794
Alignment:
Q  1 tgtggcgtcttctcagcaattttgggacgaaaggggccaaa 41  Q
    ||||||||||||||||||| ||||||||||| | |||||||    
T  23124834 tgtggcgtcttctcagcaagtttgggacgaacgaggccaaa 23124794  T

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Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 25819743 - 25819683
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagccaa 116  Q
    ||||||||  |||||| |||||||||||||| |||| || |||||||||  ||||||||||    
T  25819743 aatagggggccaaaattgcaacattttaaaacttagagggcgaaaagtgaggtttagccaa 25819683  T

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Target: scaffold0291 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 10111 - 10227
Alignment:
Q  1 tgtggcgtcttctcagcaattttgggacgaaaggggccaaaattgta---annnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcg 97  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||           ||| ||| | |||||||||||| |||||||| |||| |||||    
T  10111 tgtggcgtcttctcaacaattttgggacgaaagggaccaaaattgtatttttttttttaattgggtaccaaaatcgcaacgttttaaaacttaggggtcg 10210  T
Q  98 aaaagtgcagtttagcc 114  Q
    |||||||||||||||||    
T  10211 aaaagtgcagtttagcc 10227  T

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Target: scaffold0174 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 29906 - 29950
Alignment:
Q  1 tgtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  29906 tgtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 29950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 49850 - 49962
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaa 101  Q
    ||||| |||||| ||||||||||||| |||||||||||||||||  |       ||||||||||||||||||||||||| | |||  ||| || ||||||    
T  49850 gtggcatcttctgagcaattttgggatgaaaggggccaaaattgctattttttaaataggggatcaaaatcgcaacattatgaaacatagggggcgaaaa 49949  T
Q  102 gtgcagtttagcc 114  Q
    ||||| |||||||    
T  49950 gtgcactttagcc 49962  T

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Target: scaffold0062; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 62389 - 62501
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaa 101  Q
    ||||| |||||| ||||||||||||| |||||||||||||||||  |       ||||||||||||||||||||||||| | |||  ||| || ||||||    
T  62389 gtggcatcttctgagcaattttgggatgaaaggggccaaaattgctattttttaaataggggatcaaaatcgcaacattatgaaacatagggggcgaaaa 62488  T
Q  102 gtgcagtttagcc 114  Q
    ||||| |||||||    
T  62489 gtgcactttagcc 62501  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 16307590 - 16307471
Alignment:
Q  1 tgtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaa 100  Q
    |||||||||||||||||||||||  || |||||||||||||||||  |       ||||||||| ||||||| |||||||||||||  ||| ||  ||||    
T  16307590 tgtggcgtcttctcagcaattttaagatgaaaggggccaaaattgccatttttttaataggggaccaaaatcacaacattttaaaacatagggggtgaaa 16307491  T
Q  101 agtgcagtttagccaataat 120  Q
    ||||||||||| || |||||    
T  16307490 agtgcagtttaacctataat 16307471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 111
Target Start/End: Complemental strand, 40428752 - 40428642
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg-taannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaa 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||  |        ||||||||| ||||||||||||||||| |||  ||| || |||||    
T  40428752 gtggcgtcttctcagcaattttgggacgaagggggccaaaattgccattttttttaataggggaccaaaatcgcaacattttgaaacatagggggcgaaa 40428653  T
Q  101 agtgcagttta 111  Q
    |||||| ||||    
T  40428652 agtgcacttta 40428642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 114
Target Start/End: Complemental strand, 16901110 - 16900997
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg-taannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaa 100  Q
    |||||||||||||||||||||||||| |||| ||||||||||||  |        |||||||| |||||||||||||||||| |||  |||  | |||||    
T  16901110 gtggcgtcttctcagcaattttgggatgaaatgggccaaaattgccattttttttaatagggggtcaaaatcgcaacattttgaaacataggaggcgaaa 16901011  T
Q  101 agtgcagtttagcc 114  Q
    ||||||||||||||    
T  16901010 agtgcagtttagcc 16900997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 18695062 - 18695002
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagccaa 116  Q
    |||||||| |||||||||||||||||||||| |||| || ||||||||| |||||||||||    
T  18695062 aatagggggtcaaaatcgcaacattttaaaacttagagggcgaaaagtgaagtttagccaa 18695002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 38476583 - 38476539
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgt 46  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  38476583 gtggcgtcttctcagcaattttgggacgaaatgggccaaaattgt 38476539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 18695194 - 18695306
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaa 101  Q
    ||||||||||||||||||||||| || |||||||||||||||||  |       ||||||||  ||||||||||| ||||| |||  ||| || ||||||    
T  18695194 gtggcgtcttctcagcaattttgagatgaaaggggccaaaattgccatttttttaatagggggccaaaatcgcaatattttgaaacatagggggcgaaaa 18695293  T
Q  102 gtgcagtttagcc 114  Q
    ||||| |||||||    
T  18695294 gtgcactttagcc 18695306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 25556988 - 25556945
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  25556988 gtggcgtcttctcagcaattttgggatgaaaggggccaaaattg 25556945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 2373336 - 2373449
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaa-taggggatcaaaatcgcaacattttaaaatttagtggtcgaaa 100  Q
    |||||||||||| |||||||||||||||| |||||||||||||||         || |||| |  |||||||||||| |||| ||| |||| ||| ||||    
T  2373336 gtggcgtcttcttagcaattttgggacgacaggggccaaaattgtcctttttttaaataggaggccaaaatcgcaactttttgaaacttaggggttgaaa 2373435  T
Q  101 agtgcagtttagcc 114  Q
    ||||||||||||||    
T  2373436 agtgcagtttagcc 2373449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 38408819 - 38408931
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg-taannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaa 100  Q
    ||||| |||||| ||||||||||||| ||||||| ||||||||| |||       ||||||||| ||||||||||||||| |||||  ||| || |||||    
T  38408819 gtggcatcttctgagcaattttgggatgaaaggg-ccaaaattgctaatttttttaataggggaccaaaatcgcaacattataaaacatagaggacgaaa 38408917  T
Q  101 agtgcagtttagcc 114  Q
    | ||||||||||||    
T  38408918 aatgcagtttagcc 38408931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 111
Target Start/End: Complemental strand, 41663636 - 41663527
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaa 101  Q
    ||||| |||||| |||||||||||||||||| ||| |||||||||||       |||  ||  ||||||| |||| |||||||||||||| |||||||||    
T  41663636 gtggcatcttcttagcaattttgggacgaaatgggtcaaaattgtaatttttttaatgaggagtcaaaattgcaatattttaaaatttaggggtcgaaaa 41663537  T
Q  102 gtgcagttta 111  Q
     || ||||||    
T  41663536 atgtagttta 41663527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 114
Target Start/End: Complemental strand, 31055427 - 31055315
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaa 101  Q
    ||||| |||||| ||||||||||||| |||||||||||||||||  |       ||||||||  |||||| |||||||| | |||  ||| || ||||||    
T  31055427 gtggcatcttctgagcaattttgggatgaaaggggccaaaattgctatttttttaatagggggccaaaattgcaacattatgaaacatagggggcgaaaa 31055328  T
Q  102 gtgcagtttagcc 114  Q
    |||||||||||||    
T  31055327 gtgcagtttagcc 31055315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 32466078 - 32466133
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagttta 111  Q
    ||||||||||||||||||||||||||| ||| |||| || |||||||| |||||||    
T  32466078 aataggggatcaaaatcgcaacattttgaaacttaggggacgaaaagtacagttta 32466133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 31576541 - 31576491
Alignment:
Q  66 caaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagccaa 116  Q
    |||||| |||||||||| ||| |||| ||||||||||||||||||||||||    
T  31576541 caaaattgcaacattttgaaacttaggggtcgaaaagtgcagtttagccaa 31576491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 125
Target Start/End: Original strand, 40428884 - 40428952
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagccaataataaaaa 125  Q
    |||||||| |||||||||||||||||| ||| |||| || ||||||||| ||||||||||| || |||||    
T  40428884 aatagggg-tcaaaatcgcaacattttgaaacttagagggcgaaaagtgaagtttagccaaaaaaaaaaa 40428952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 245785 - 245898
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg-taannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaa 100  Q
    |||||||||||||||||||||| ||| ||| |||||||||||||  |        |||||||||  ||||||||||||||||||||  |||  | |||||    
T  245785 gtggcgtcttctcagcaattttcggatgaagggggccaaaattgccattttttttaataggggactaaaatcgcaacattttaaaacataggtggcgaaa 245884  T
Q  101 agtgcagtttagcc 114  Q
    |||||| |||||||    
T  245885 agtgcactttagcc 245898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 20654050 - 20654098
Alignment:
Q  66 caaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    ||||||| ||||||||| ||| |||| ||||||||||||||||||||||    
T  20654050 caaaatcacaacattttgaaacttaggggtcgaaaagtgcagtttagcc 20654098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 111
Target Start/End: Complemental strand, 23040057 - 23039954
Alignment:
Q  9 cttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnn--aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgca 106  Q
    ||||||||||||||||||||||| | | ||||||||||||         ||||| ||| |||||||| |||||||||||| |||  ||||||||||||||    
T  23040057 cttctcagcaattttgggacgaatgag-ccaaaattgtaatttttttttaatagaggaccaaaatcgtaacattttaaaacttataggtcgaaaagtgca 23039959  T
Q  107 gttta 111  Q
    |||||    
T  23039958 gttta 23039954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 114
Target Start/End: Complemental strand, 37961361 - 37961248
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaa-nnnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaa 100  Q
    |||| ||||||||||||||||||||| ||||||| |||| |||||||        |||||||| |||||||||||| ||||| ||| ||||  |  ||||    
T  37961361 gtggtgtcttctcagcaattttgggatgaaagggaccaagattgtaattttttttaatagggggtcaaaatcgcaatattttgaaacttaggaggtgaaa 37961262  T
Q  101 agtgcagtttagcc 114  Q
    ||||| ||||||||    
T  37961261 agtgcggtttagcc 37961248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 26639150 - 26639107
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    |||||||||||||| ||||||||||| ||| |||||||||||||    
T  26639150 gtggcgtcttctcaacaattttgggatgaagggggccaaaattg 26639107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 114
Target Start/End: Original strand, 26639286 - 26639341
Alignment:
Q  59 aggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    |||||| ||||||||||||||||| ||| |||| || ||||||||| |||||||||    
T  26639286 aggggaccaaaatcgcaacattttgaaacttagaggacgaaaagtgaagtttagcc 26639341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 31648175 - 31648218
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    ||||||||||||||||| |||||||| |||||||| ||||||||    
T  31648175 gtggcgtcttctcagcagttttgggatgaaaggggtcaaaattg 31648218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 4800981 - 4800935
Alignment:
Q  67 aaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagc 113  Q
    |||||||||||||||||||| |||| || |||||| |||||||||||    
T  4800981 aaaatcgcaacattttaaaacttagggggcgaaaaatgcagtttagc 4800935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 8645855 - 8645797
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    |||||||| |||||||||||||||||| ||| | || || ||||||||| |||||||||    
T  8645855 aatagggggtcaaaatcgcaacattttgaaactaagagggcgaaaagtgaagtttagcc 8645797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 8645946 - 8645984
Alignment:
Q  7 gtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    ||||||||| ||||||||||| |||||||||||||||||    
T  8645946 gtcttctcaacaattttgggatgaaaggggccaaaattg 8645984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 10293331 - 10293389
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    ||||| || |||||||| ||||||||| ||| ||||||| ||||||||||| |||||||    
T  10293331 aatagcgggtcaaaatcacaacattttgaaacttagtggacgaaaagtgcaatttagcc 10293389  T

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Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 23765635 - 23765693
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    ||||||||  |||||| |||||||||||||| |||| || ||||||||| |||||||||    
T  23765635 aatagggggccaaaattgcaacattttaaaacttagagggcgaaaagtgaagtttagcc 23765693  T

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Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 23815483 - 23815541
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    ||||||||  |||||| |||||||||||||| |||| || ||||||||| |||||||||    
T  23815483 aatagggggccaaaattgcaacattttaaaacttagagggcgaaaagtgaagtttagcc 23815541  T

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Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 25557120 - 25557178
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc 114  Q
    |||||||| |||||||||||||||||| ||| |||| || ||||||||  |||||||||    
T  25557120 aatagggggtcaaaatcgcaacattttgaaacttagggggcgaaaagtagagtttagcc 25557178  T

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Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 31648240 - 31648297
Alignment:
Q  66 caaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagccaataataaa 123  Q
    ||||||||||||||||| |||  ||| || ||||||||||||||||||| | ||||||    
T  31648240 caaaatcgcaacattttgaaacataggggacgaaaagtgcagtttagcctaaaataaa 31648297  T

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Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 36641335 - 36641376
Alignment:
Q  3 tggcgtcttctcagcaattttgggacgaaaggggccaaaatt 44  Q
    |||||||||||||||||||||  || ||||||||||||||||    
T  36641335 tggcgtcttctcagcaattttttgatgaaaggggccaaaatt 36641376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 10293201 - 10293161
Alignment:
Q  1 tgtggcgtcttctcagcaattttgggacgaaaggggccaaa 41  Q
    |||||||||||||||||| |||| |||||||| ||||||||    
T  10293201 tgtggcgtcttctcagcatttttaggacgaaatgggccaaa 10293161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 114
Target Start/End: Complemental strand, 17825610 - 17825497
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaattta-gtggtcgaaa 100  Q
    |||||||||||| |  ||||||| || ||||||||||||||||||||       ||| |||| ||||||| |||||||| | |||  || | ||||||||    
T  17825610 gtggcgtcttctaaaaaattttgagatgaaaggggccaaaattgtaatttttctaattgggggtcaaaattgcaacattctgaaacctagggggtcgaaa 17825511  T
Q  101 agtgcagtttagcc 114  Q
    ||| ||||||||||    
T  17825510 agtacagtttagcc 17825497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 34125251 - 34125295
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgt 46  Q
    ||||||| ||||||| |||||||||| ||| ||||||||||||||    
T  34125251 gtggcgtattctcagtaattttgggatgaagggggccaaaattgt 34125295  T

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Target: scaffold0419 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 116
Target Start/End: Complemental strand, 3073 - 2959
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaa 101  Q
    |||||||||||||| ||||||||||| ||| |||||||||||||  |       ||||||||  ||||||||||||||||| |||  ||| || ||||||    
T  3073 gtggcgtcttctcatcaattttgggatgaagggggccaaaattgccatttttttaatagggggccaaaatcgcaacattttgaaacatagggggcgaaaa 2974  T
Q  102 gtgcagtttagccaa 116  Q
    ||||| |||||||||    
T  2973 gtgcactttagccaa 2959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 2182 - 2294
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaa 101  Q
    |||||||||||||||||||||| ||| |||||||||||||||||  |       ||||| ||  |||||| ||||||||||||||  | | || ||||||    
T  2182 gtggcgtcttctcagcaatttttggatgaaaggggccaaaattgctatttttttaatagagggccaaaattgcaacattttaaaacatggggggcgaaaa 2281  T
Q  102 gtgcagtttagcc 114  Q
    |||||||||||||    
T  2282 gtgcagtttagcc 2294  T

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Target: scaffold0406; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 2055 - 1995
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagccaa 116  Q
    |||||||| |||||||||||||||||||||| |||| || ||||||||  |||||||||||    
T  2055 aatagggggtcaaaatcgcaacattttaaaacttagagggcgaaaagtaaagtttagccaa 1995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0607 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0607
Description:

Target: scaffold0607; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 114
Target Start/End: Complemental strand, 2162 - 2048
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaa--nnnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaa 99  Q
    |||||||||||||||||||||| ||| |||||||||||||||||  |         ||||||||  |||||| ||||||||||||||  ||| || ||||    
T  2162 gtggcgtcttctcagcaatttttggatgaaaggggccaaaattgctatttttttttaatagggggccaaaattgcaacattttaaaacatagggggcgaa 2063  T
Q  100 aagtgcagtttagcc 114  Q
    |||||||||||||||    
T  2062 aagtgcagtttagcc 2048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 6022 - 6134
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaa 101  Q
    ||||| |||||||||||||||||||| ||| |||||||||||||  |       ||||||||  |||||||||||||||| ||||  ||| || ||||||    
T  6022 gtggcatcttctcagcaattttgggatgaagggggccaaaattgccatttttttaatagggggccaaaatcgcaacatttaaaaacatagggggcgaaaa 6121  T
Q  102 gtgcagtttagcc 114  Q
    || || |||||||    
T  6122 gtacactttagcc 6134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 25077 - 25034
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    |||||||||||||||||||||||| | |||||||||||||||||    
T  25077 gtggcgtcttctcagcaattttggtatgaaaggggccaaaattg 25034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 112317 - 112429
Alignment:
Q  1 tgtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnnaataggggatcaaaatcgcaacattttaaaatttagtggtcgaaa 100  Q
    |||||||||||||| |||||||| ||||||||  ||||||||||||||       |||| ||   |||||| |||||||||||||| || | || |||||    
T  112317 tgtggcgtcttctctgcaattttaggacgaaaaaggccaaaattgtaatttttttaataaggagccaaaattgcaacattttaaaactttggggacgaaa 112416  T
Q  101 agtgcagtttagc 113  Q
    |||| ||||||||    
T  112417 agtgtagtttagc 112429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1875 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1875
Description:

Target: scaffold1875; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 868 - 826
Alignment:
Q  3 tggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    ||||||||||||| ||||||||||||||| |||||||||||||    
T  868 tggcgtcttctcaacaattttgggacgaagggggccaaaattg 826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 116
Target Start/End: Complemental strand, 250631 - 250516
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattgtaannnnnnn-aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaa 100  Q
    ||||||||||||||||||||||  || ||| |||||||||||||  |        |||||||| ||||| ||||||||||||||||  ||| || |||||    
T  250631 gtggcgtcttctcagcaattttcagatgaagggggccaaaattgccattttttttaatagggggtcaaagtcgcaacattttaaaacatagggggcgaaa 250532  T
Q  101 agtgcagtttagccaa 116  Q
    |||||| |||||||||    
T  250531 agtgcactttagccaa 250516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 3041 - 2996
Alignment:
Q  1 tgtggcgtcttctcagcaattttgggacgaaaggggccaaaattgt 46  Q
    ||||||||||||||  ||||||| ||||||||||||||||||||||    
T  3041 tgtggcgtcttctcttcaattttaggacgaaaggggccaaaattgt 2996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1891 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1891
Description:

Target: scaffold1891; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 818 - 865
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagt 103  Q
    |||| ||| |||||||||||||||||||||||||||||| | ||||||    
T  818 aatatggggtcaaaatcgcaacattttaaaatttagtggaccaaaagt 865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0683 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0683
Description:

Target: scaffold0683; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 5230 - 5191
Alignment:
Q  6 cgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    |||||||||||||||||| ||| |||||||||||||||||    
T  5230 cgtcttctcagcaatttttggatgaaaggggccaaaattg 5191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0474 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0474
Description:

Target: scaffold0474; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 91
Target Start/End: Complemental strand, 7712 - 7677
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttag 91  Q
    |||| |||||||||||||||||||||||||||||||    
T  7712 aataagggatcaaaatcgcaacattttaaaatttag 7677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 66365 - 66408
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    ||||||||||||||| |||||| ||| |||||||||||||||||    
T  66365 gtggcgtcttctcagaaatttttggatgaaaggggccaaaattg 66408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 66230 - 66174
Alignment:
Q  67 aaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagcc-aataataa 122  Q
    ||||| |||||||||||||| |||| || ||||||||| ||||||||| ||||||||    
T  66230 aaaattgcaacattttaaaacttagagggcgaaaagtgaagtttagcctaataataa 66174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 19473 - 19516
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    |||||||||||||||||||||| ||| |||| ||||||||||||    
T  19473 gtggcgtcttctcagcaatttttggatgaaatgggccaaaattg 19516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 62007 - 62050
Alignment:
Q  2 gtggcgtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    |||||||||||||| ||||||| ||| |||||||||||||||||    
T  62007 gtggcgtcttctcaacaatttttggatgaaaggggccaaaattg 62050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 19343 - 19283
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagtttagccaa 116  Q
    |||||||| |||||||||||||||||| ||| ||||  | ||||||||  |||||||||||    
T  19343 aatagggggtcaaaatcgcaacattttgaaacttaggaggcgaaaagtagagtttagccaa 19283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 142192 - 142247
Alignment:
Q  56 aataggggatcaaaatcgcaacattttaaaatttagtggtcgaaaagtgcagttta 111  Q
    ||||||||| |||||| |||||||||||||| |||| || ||||||||| ||||||    
T  142192 aataggggaccaaaattgcaacattttaaaacttagagggcgaaaagtgaagttta 142247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 4943 - 4981
Alignment:
Q  7 gtcttctcagcaattttgggacgaaaggggccaaaattg 45  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  4943 gtcttctcagcaattttgggatgaaaggggtcaaaattg 4981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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