View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7704_low_26 (Length: 241)
Name: NF7704_low_26
Description: NF7704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7704_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 34886665 - 34886459
Alignment:
| Q |
17 |
catgaaacccttaacaaatttcccattatagttttggataatgtcgtcgcatccatatttactttgatgaactctcaatcgaggagactttgacaggtgc |
116 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||| |
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| T |
34886665 |
catgaaacccttaacaaatttcccattatagtttcggataatgtcgtcgcatccatatttactttgatgaactctcagtcgaggaggctttgaccggtgc |
34886566 |
T |
|
| Q |
117 |
atgtgtttccgnnnnnnnttctcatcttgagacataagtggacaattaaaattttcctcaatttgatatgccatgttgatggattttgaagtgatatgca |
216 |
Q |
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||||||||||| || |||||||||||||||||| ||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34886565 |
atgtgtttccgaaaaaaattatcatcttgagacataagtcaacaattaaactttttctaaatttgatatgccatgttgatggattttgaagtgatatgca |
34886466 |
T |
|
| Q |
217 |
taccaag |
223 |
Q |
| |
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||||||| |
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| T |
34886465 |
taccaag |
34886459 |
T |
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