View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7704_low_28 (Length: 228)
Name: NF7704_low_28
Description: NF7704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7704_low_28 |
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| [»] chr6 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 9326655 - 9326428
Alignment:
| Q |
1 |
aatgaaaaggatgtacatttttcatttggaagcattcaaaaagatggaatcaagaaagcaacagaaggaatgcgtttgtcgaaattttgcctaaacatag |
100 |
Q |
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| T |
9326655 |
aatgaaaaggatgtacatttttcatttggaagcattcaaaaagatggaatcaagaaagcaacagaaggaatgcgtttgtcgaaattttgcctaaacatag |
9326556 |
T |
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| Q |
101 |
caggcgacacaccttcatcaaaccgcttgttcgacgcaattgctagtcattgtgtccctgtgatcatcagtgatgaaattgagctaccgttcgaggatat |
200 |
Q |
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| T |
9326555 |
caggcgacacaccttcatcaaaccgcttgttcgacgcaattgctagtcattgtgtccctgtgatcatcagtgatgaaattgagctaccgttcgaggatat |
9326456 |
T |
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| Q |
201 |
cctcgactactccgagttctgcatattt |
228 |
Q |
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| T |
9326455 |
cctcgactactccgagttctgcatattt |
9326428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 228
Target Start/End: Original strand, 33904947 - 33905171
Alignment:
| Q |
4 |
gaaaaggatgtacatttttcatttggaagcattcaaaaagatggaatcaagaaagcaacagaaggaatgcgtttgtcgaaattttgcctaaacatagcag |
103 |
Q |
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| T |
33904947 |
gaaaaagatgtacatttttcatttggaagtgtacagaaaggtggagtgaggaatgcaacaaacggcatgcgatcttcgaaattctgtctcaacatagctg |
33905046 |
T |
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| Q |
104 |
gcgacacaccttcatcaaaccgcttgttcgacgcaattgctagtcattgtgtccctgtgatcatcagtgatgaaattgagctaccgttcgaggatatcct |
203 |
Q |
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| T |
33905047 |
gcgacacgccatcatcaaatcgcttattcgatgcaattgcaagtcactgtgttcctgtcataatcagtgatgaaattgagcttccatatgaggatgttct |
33905146 |
T |
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| Q |
204 |
cgactactccgagttctgcatattt |
228 |
Q |
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| T |
33905147 |
cgactactccaagttctgcgtattt |
33905171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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