View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7704_low_3 (Length: 811)
Name: NF7704_low_3
Description: NF7704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7704_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 357 - 794
Target Start/End: Original strand, 35197158 - 35197595
Alignment:
| Q |
357 |
gctaaacatataattgtttattgatagtcactaagaggaagaatcccaaatcaaattgatttctattgctaagttttgagactatcattttaagctccca |
456 |
Q |
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| T |
35197158 |
gctaaacatataattgcttattgatagtcactaagaggaagaatcccaaatcaaattgatttctattgctaagttttgagactatcattttaagctccca |
35197257 |
T |
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| Q |
457 |
cacccattccaagggaaataggaaaacattaaaataatcatattgaagcatctctcagtaaagtatatataacataacaacaataatacagtagaaaagt |
556 |
Q |
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| T |
35197258 |
cacccattccaagggaaataggaaaacattaaaataatcatattgaagcatctctcagtaaagtatatataacataacaacaataatacagtagaaaagt |
35197357 |
T |
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| Q |
557 |
ccctcacaaacattctaaaaggccccacaggattgaatatacttgaaacttccataaactagagtccaaagccataagtggtagattctgttgttaaaag |
656 |
Q |
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| T |
35197358 |
ccctcacaaacattctaaaaggccccacaggattgaatatacttgaaacttccataaactagagtccaaagccataagtggtagattctgttgttaaaag |
35197457 |
T |
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| Q |
657 |
accgtgtatgaccagtttccttactggatttttctatagctttgcttcttatggtctactttccaaggtgtgactcttttactattgcttgctacttact |
756 |
Q |
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| T |
35197458 |
accgtgtatgaccagtttccttactggatttttctatagctttgcttcttatggtctactttccaaggtgtgactcttttactattgcttgctacttact |
35197557 |
T |
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| Q |
757 |
tttcactatgatcgagtggtcaattattatgttaacac |
794 |
Q |
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| T |
35197558 |
tttcactatgatcgagtggtcaattattatgttaacac |
35197595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 35196818 - 35197096
Alignment:
| Q |
18 |
tgatgttacatattcaacaaaactttaagatatagaatgtttacttaaatat-attatgttatatggcccatatgtcatatgcttcgcaatacatattat |
116 |
Q |
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||||||||||||| |||||||| |||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35196818 |
tgatgttacatatccaacaaaattttaggatatagagtgtttacttaaatattattatgttatatggcccatatgtcatatgcttcgcaatacatattat |
35196917 |
T |
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| Q |
117 |
aatggactctaagaatactataaattaataaagggtataatgtaagcacataatttataagacatgatcattaaaatttaaaaatcataattattattaa |
216 |
Q |
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| T |
35196918 |
aatggacactaagaatactataaattaataaagggtataatgtaagcacataatttataagacatgatcattaaaatttaaaaatcataattatttataa |
35197017 |
T |
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| Q |
217 |
tagaaacttcatatctgcatatatgatctgtggacaggttgggagcaagtaacatctcattccacaatgcaaccattgg |
295 |
Q |
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| T |
35197018 |
tagaaacttcatatctgcatatatgatctgtggacaggttgggagcaagtaacatctcattccacaatgcaaccattgg |
35197096 |
T |
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