View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7704_low_33 (Length: 217)

Name: NF7704_low_33
Description: NF7704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7704_low_33
NF7704_low_33
[»] chr2 (3 HSPs)
chr2 (9-204)||(13945398-13945583)
chr2 (9-204)||(14086587-14086772)
chr2 (22-204)||(24992648-24992829)
[»] chr7 (1 HSPs)
chr7 (22-204)||(610327-610508)
[»] chr6 (6 HSPs)
chr6 (22-204)||(8998441-8998622)
chr6 (22-204)||(9007610-9007792)
chr6 (96-194)||(27747224-27747322)
chr6 (19-159)||(11377388-11377527)
chr6 (96-194)||(25898162-25898260)
chr6 (102-195)||(17946105-17946198)
[»] chr5 (7 HSPs)
chr5 (22-204)||(724708-724889)
chr5 (22-202)||(15326999-15327178)
chr5 (22-159)||(18711591-18711727)
chr5 (96-194)||(24296793-24296891)
chr5 (104-194)||(24416304-24416394)
chr5 (104-194)||(30450814-30450904)
chr5 (12-44)||(23915162-23915194)
[»] chr4 (4 HSPs)
chr4 (22-204)||(115743-115924)
chr4 (22-159)||(14935893-14936029)
chr4 (104-194)||(54695998-54696088)
chr4 (11-83)||(17132939-17133011)
[»] chr3 (3 HSPs)
chr3 (22-157)||(25507621-25507755)
chr3 (22-204)||(19688392-19688573)
chr3 (106-204)||(2158928-2159026)
[»] scaffold0096 (1 HSPs)
scaffold0096 (22-204)||(52610-52791)
[»] chr8 (5 HSPs)
chr8 (22-159)||(45495483-45495619)
chr8 (104-194)||(20748095-20748185)
chr8 (22-83)||(19754300-19754361)
chr8 (96-194)||(18236395-18236493)
chr8 (96-194)||(18245846-18245944)
[»] scaffold0500 (1 HSPs)
scaffold0500 (96-204)||(9611-9719)
[»] scaffold0021 (1 HSPs)
scaffold0021 (19-159)||(166869-167008)
[»] scaffold0028 (2 HSPs)
scaffold0028 (96-204)||(85448-85556)
scaffold0028 (104-194)||(100512-100602)


Alignment Details
Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 9 - 204
Target Start/End: Original strand, 13945398 - 13945583
Alignment:
Q  9 aagcatcaacacttcttgctatattttgaacaaagtgtcaataagaaaaaatttaaacaaaaccacgtatgaactatgnnnnnnnnngaaatccaaacat 108  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||         ||||| |||||||||||||||         |||| ||||||||    
T  13945398 aagcatcaacacttcttgctatattttgaacaaagtgtcgataagaaa---------caaaatcacgtatgaactatgaaaaaaaa-gaaagccaaacat 13945487  T
Q  109 ttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttct 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||    
T  13945488 ttcatattttcgtatctttcaatgttattgttacattttaaacaataaggaaaatttaggcaagtttgattaaaaatcagacaaagctatatttct 13945583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 9 - 204
Target Start/End: Original strand, 14086587 - 14086772
Alignment:
Q  9 aagcatcaacacttcttgctatattttgaacaaagtgtcaataagaaaaaatttaaacaaaaccacgtatgaactatgnnnnnnnnngaaatccaaacat 108  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||         ||||| |||||||||||||||         |||| ||||||||    
T  14086587 aagcatcaacacttcttgctatattttgaacaaagtgtcgataagaaa---------caaaatcacgtatgaactatgaaaaaaaa-gaaagccaaacat 14086676  T
Q  109 ttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttct 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||    
T  14086677 ttcatattttcgtatctttcaatgttattgttacattttaaacaataaggaaaatttaggcaagtttgattaaaaatcagacaaagctatatttct 14086772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 204
Target Start/End: Original strand, 24992648 - 24992829
Alignment:
Q  22 tcttgctatattttgaacaaagtgtcaataagaaaaaatttaaacaaaaccacgtatgaactatgnnnnnnnnngaaatccaaacatttcatattttcgt 121  Q
    |||||||| ||||| |||| ||| ||||||||||||  ||||||||||||| |||||||||| ||         |||| ||| ||||||| ||||||| |    
T  24992648 tcttgctacattttaaacagagtttcaataagaaaatttttaaacaaaaccccgtatgaactctg-gaaagaaagaaagccagacatttcttattttcat 24992746  T
Q  122 atctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttct 204  Q
    || |||  ||| |||||||| ||||||||||| ||||| ||   ||  || ||||||| ||| ||||||||||||||||||||    
T  24992747 atttttggatgctattgttatattttaaacaacaaagataacctagaaaaatttgattcaaagtcagacaaagctatatttct 24992829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 22 - 204
Target Start/End: Original strand, 610327 - 610508
Alignment:
Q  22 tcttgctatattttgaacaaagtgtcaataagaaaaaatttaaacaaaaccacgtatgaactatgnnnnnnnnngaaatccaaacatttcatattttcgt 121  Q
    |||||||| ||||| |||| ||| ||||||||||||  ||||||||||||| |||||||||| ||         |||| ||| ||||||| ||||||| |    
T  610327 tcttgctacattttaaacagagtttcaataagaaaagttttaaacaaaaccccgtatgaactctggaaagaaa-gaaagccagacatttcttattttcat 610425  T
Q  122 atctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttct 204  Q
    || |||  |||||||||||| ||||||||||| ||||| ||   ||| || ||||||| ||||||||||||||||||||||||    
T  610426 atttttggatgttattgttatattttaaacaacaaagataacctaggaaaatttgattcaaaatcagacaaagctatatttct 610508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 9e-23; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 22 - 204
Target Start/End: Original strand, 8998441 - 8998622
Alignment:
Q  22 tcttgctatattttgaacaaagtgtcaataagaaaaaatttaaacaaaaccacgtatgaactatgnnnnnnnnngaaatccaaacatttcatattttcgt 121  Q
    |||||||| ||||| |||| ||| ||||||||||||  ||||||||||||| |||||||||| ||         |||| ||| ||||||| ||||||| |    
T  8998441 tcttgctacattttaaacagagtttcaataagaaaagttttaaacaaaaccccgtatgaactctggaaagaaa-gaaagccagacatttcttattttcat 8998539  T
Q  122 atctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttct 204  Q
    || |||  |||||||||||| ||||||||||| ||||| ||   ||| || ||||||| ||||||||||||||||||||||||    
T  8998540 atttttggatgttattgttatattttaaacaacaaagataacctaggaaaatttgattcaaaatcagacaaagctatatttct 8998622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 204
Target Start/End: Original strand, 9007610 - 9007792
Alignment:
Q  22 tcttgctatattttgaacaaagtgtcaataagaaaaaatttaaacaaaaccacgtatgaactatgnnnnnnnnngaaatccaaacatttcatattttcgt 121  Q
    |||||||| ||||| || | ||| ||||||||||||  ||||||||||||| |||||||||| |          |||| ||| ||||||| ||||||| |    
T  9007610 tcttgctacattttaaatagagtttcaataagaaaagttttaaacaaaaccccgtatgaactctagaaaagaaagaaagccagacatttcttattttcat 9007709  T
Q  122 atctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttct 204  Q
    || |||  |||||||||||| ||||||||||| ||||| ||   ||| || ||||||| ||| ||||||||||||||||||||    
T  9007710 atttttggatgttattgttatattttaaacaacaaagataacctaggaaaatttgattcaaagtcagacaaagctatatttct 9007792  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 194
Target Start/End: Complemental strand, 27747322 - 27747224
Alignment:
Q  96 gaaatccaaacatttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaag 194  Q
    |||| |||||||||||||||||||  ||||||  ||||||||| || ||| ||||||| ||||| |||  ||| |||||||||| ||||||||||||||    
T  27747322 gaaagccaaacatttcatattttcacatctttggatgttattgctatattctaaacaacaaagataatctaggaaagtttgattcaaaatcagacaaag 27747224  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 159
Target Start/End: Original strand, 11377388 - 11377527
Alignment:
Q  19 acttcttgctatattttgaacaaagtgtcaataagaaaaaatttaaacaaaaccacgtatgaactatgnnnnnnnnngaaatccaaacatttcatatttt 118  Q
    |||||||||||||| || |||||||| ||||||||||    ||||||||||||| |||||||||| ||         |||| ||||||||||||||||||    
T  11377388 acttcttgctatatcttaaacaaagtttcaataagaatttttttaaacaaaaccccgtatgaactctg-taaaggaagaaagccaaacatttcatatttt 11377486  T
Q  119 cgtatctttcaatgttattgttacattttaaacaataaaga 159  Q
    |  ||||||  ||||||||| |||||| ||||||| |||||    
T  11377487 cacatctttggatgttattgctacattctaaacaacaaaga 11377527  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 194
Target Start/End: Original strand, 25898162 - 25898260
Alignment:
Q  96 gaaatccaaacatttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaag 194  Q
    |||| ||||||||||| |||||||  ||||||   |||| ||| |||||||||||  ||||||| || | ||| || ||||||| ||||||||||||||    
T  25898162 gaaaaccaaacatttcttattttcacatctttggctgtttttgctacattttaaatgataaagaaaacttaggaaaatttgattcaaaatcagacaaag 25898260  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 17946105 - 17946198
Alignment:
Q  102 caaacatttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagc 195  Q
    |||||||||||||||||| ||| |||  |||||||  |||||| || ||||| |||||||  |  || |||||||| | |||||||||||||||    
T  17946105 caaacatttcatattttcatatttttggatgttatctttacatcttgaacaacaaagacatcttgggaaagtttgactcaaaatcagacaaagc 17946198  T

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Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 22 - 204
Target Start/End: Complemental strand, 724889 - 724708
Alignment:
Q  22 tcttgctatattttgaacaaagtgtcaataagaaaaaatttaaacaaaaccacgtatgaactatgnnnnnnnnngaaatccaaacatttcatattttcgt 121  Q
    |||||||| ||||| |||| ||| ||||||||||||  ||||||||||||| |||||||||| ||         |||| ||| ||||||| ||||||| |    
T  724889 tcttgctacattttaaacagagtttcaataagaaaagttttaaacaaaaccccgtatgaactctggaaagaaa-gaaagccagacatttcttattttcat 724791  T
Q  122 atctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttct 204  Q
    || |||  |||||||||||| ||||||||||| ||||| ||   ||| || ||||||| ||||||||||||||||||||||||    
T  724790 atttttggatgttattgttatattttaaacaacaaagataacctaggaaaatttgattcaaaatcagacaaagctatatttct 724708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 202
Target Start/End: Complemental strand, 15327178 - 15326999
Alignment:
Q  22 tcttgctatattttgaacaaagtgtcaataagaaaaaatttaaacaaaaccacgtatgaactatgnnnnnnnnngaaatccaaacatttcatattttcgt 121  Q
    ||||||||||| ||||||| ||| ||||| ||||||  ||||||||||||| |||||||||| ||         |||| ||||||||||||||||||| |    
T  15327178 tcttgctatatcttgaacagagtttcaattagaaaagttttaaacaaaaccccgtatgaactctg-gaaaggaagaaagccaaacatttcatattttcat 15327080  T
Q  122 atctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatattt 202  Q
    || |||   |||||||| |||||  ||||||||||||| | ||  || || ||||| | ||| ||||||||||| ||||||    
T  15327079 atttttggctgttattgctacatcctaaacaataaagatactttggggaaatttgactcaaagtcagacaaagcaatattt 15326999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 159
Target Start/End: Original strand, 18711591 - 18711727
Alignment:
Q  22 tcttgctatattttgaacaaagtgtcaataagaaaaaatttaaacaaaaccacgtatgaactatgnnnnnnnnngaaatccaaacatttcatattttcgt 121  Q
    ||||||||||| ||||||| ||| ||||| ||||||  ||||||||||||| |||||||||| ||         |||| ||||||||||||||||||| |    
T  18711591 tcttgctatatcttgaacagagtttcaattagaaaagttttaaacaaaaccccgtatgaactttg-gaaaggaagaaagccaaacatttcatattttcat 18711689  T
Q  122 atctttcaatgttattgttacattttaaacaataaaga 159  Q
    || |||   |||||||| |||||  |||||||||||||    
T  18711690 atatttggctgttattgctacatcctaaacaataaaga 18711727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 194
Target Start/End: Complemental strand, 24296891 - 24296793
Alignment:
Q  96 gaaatccaaacatttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaag 194  Q
    |||| ||||||||||| |||||||  ||||||   |||| ||| |||||||||||  ||||||| || | ||| || ||||||| ||||||||||||||    
T  24296891 gaaaaccaaacatttcttattttcacatctttggctgtttttgctacattttaaatgataaagaaaacttaggaaaatttgattcaaaatcagacaaag 24296793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 194
Target Start/End: Original strand, 24416304 - 24416394
Alignment:
Q  104 aacatttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaag 194  Q
    ||||| |||||||||| ||| |||  |||||||||||| ||||||||  ||||||| |||  ||| || ||||||| ||||||||| ||||    
T  24416304 aacatctcatattttcatatttttggatgttattgttatattttaaatgataaagaaaatctaggaaaatttgattcaaaatcagataaag 24416394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 194
Target Start/End: Complemental strand, 30450904 - 30450814
Alignment:
Q  104 aacatttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaag 194  Q
    ||||| |||||||||| ||| |||  |||||||||||| ||||||||  ||||||| |||  ||| || ||||||| ||||||||| ||||    
T  30450904 aacatctcatattttcatatttttggatgttattgttatattttaaatgataaagaaaatctaggaaaatttgattcaaaatcagataaag 30450814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 23915194 - 23915162
Alignment:
Q  12 catcaacacttcttgctatattttgaacaaagt 44  Q
    ||||||||||||||||||||||||| |||||||    
T  23915194 catcaacacttcttgctatattttggacaaagt 23915162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 22 - 204
Target Start/End: Original strand, 115743 - 115924
Alignment:
Q  22 tcttgctatattttgaacaaagtgtcaataagaaaaaatttaaacaaaaccacgtatgaactatgnnnnnnnnngaaatccaaacatttcatattttcgt 121  Q
    |||||||| ||||| |||| ||| ||||||||||||  ||||||||||||| |||||||||| ||         |||| ||| ||||||| ||||||| |    
T  115743 tcttgctacattttaaacagagtttcaataagaaaagttttaaacaaaaccccgtatgaactctggaaagaaa-gaaagccagacatttcttattttcat 115841  T
Q  122 atctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttct 204  Q
    || |||  |||||||||||| ||||||||||| ||||| ||   ||| || ||||||| ||||||||||||||||||||||||    
T  115842 atttttggatgttattgttatattttaaacaacaaagataacctaggaaaatttgattcaaaatcagacaaagctatatttct 115924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 159
Target Start/End: Original strand, 14935893 - 14936029
Alignment:
Q  22 tcttgctatattttgaacaaagtgtcaataagaaaaaatttaaacaaaaccacgtatgaactatgnnnnnnnnngaaatccaaacatttcatattttcgt 121  Q
    ||||||||||| ||||||| ||| ||||| ||||||  |||||| |||||| |||||||||| ||         |||| ||||||||||||||||||| |    
T  14935893 tcttgctatatcttgaacagagtttcaattagaaaagttttaaaaaaaaccccgtatgaactctggaaaggaa-gaaagccaaacatttcatattttcat 14935991  T
Q  122 atctttcaatgttattgttacattttaaacaataaaga 159  Q
    || |||   |||||||| ||||| ||||||||||||||    
T  14935992 atatttggctgttattgctacatcttaaacaataaaga 14936029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 194
Target Start/End: Complemental strand, 54696088 - 54695998
Alignment:
Q  104 aacatttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaag 194  Q
    ||||| |||||||||| ||| |||  |||||||||||| ||||||||  ||||||| |||  ||| || ||||||| ||||||||| ||||    
T  54696088 aacatctcatattttcatatttttggatgttattgttatattttaaatgataaagaaaatctaggaaaatttgattcaaaatcagataaag 54695998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 17132939 - 17133011
Alignment:
Q  11 gcatcaacacttcttgctatattttgaacaaagtgtcaataagaaaaaatttaaacaaaaccacgtatgaact 83  Q
    ||||||||| |||||| |||||| | |||| |||  |||||||||| | ||| ||||||||||| ||||||||    
T  17132939 gcatcaacaattcttgatatattctaaacatagttccaataagaaagattttgaacaaaaccacatatgaact 17133011  T

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Target: chr3 (Bit Score: 52; Significance: 5e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 22 - 157
Target Start/End: Complemental strand, 25507755 - 25507621
Alignment:
Q  22 tcttgctatattttgaacaaagtgtcaataagaaaaaatttaaacaaaaccacgtatgaactatgnnnnnnnnngaaatccaaacatttcatattttcgt 121  Q
    ||||||||||| ||||||| ||| ||||||||||||  ||||||||||||| |||||||||| ||         |||| | |||||||||||| |||| |    
T  25507755 tcttgctatatcttgaacagagtttcaataagaaaagttttaaacaaaaccccgtatgaactctggaaaggaa-gaaagctaaacatttcatactttcat 25507657  T
Q  122 atctttcaatgttattgttacattttaaacaataaa 157  Q
    |||||| ||||||||||||||||||| |||||||||    
T  25507656 atctttgaatgttattgttacattttgaacaataaa 25507621  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 22 - 204
Target Start/End: Original strand, 19688392 - 19688573
Alignment:
Q  22 tcttgctatattttgaacaaagtgtcaataagaaaaaatttaaacaaaaccacgtatgaactatgnnnnnnnnngaaatccaaacatttcatattttcgt 121  Q
    |||||||| ||||| |||| ||| ||||||||||||  ||||||||||||| |||||||||| ||         |||| ||| ||||||| ||||||| |    
T  19688392 tcttgctacattttaaacagagtttcaataagaaaagttttaaacaaaaccccgtatgaactctggaaagaaa-gaaagccagacatttcttattttcat 19688490  T
Q  122 atctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttct 204  Q
    || |||  |||||||||||| ||||||||||| ||| | ||   ||| || ||||||| ||| ||||||||||||||||||||    
T  19688491 atttttggatgttattgttatattttaaacaacaaatataacctaggaaaatttgattcaaagtcagacaaagctatatttct 19688573  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 204
Target Start/End: Original strand, 2158928 - 2159026
Alignment:
Q  106 catttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttct 204  Q
    |||| |||| |||| |||||||  |||||||||||||||||| ||||| ||||| ||||   | |||||||| |  || |||||||||||||| |||||    
T  2158928 cattgcatactttcatatctttggatgttattgttacattttgaacaacaaagataatttgagtaagtttgactctaagtcagacaaagctatttttct 2159026  T

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Target: scaffold0096 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 204
Target Start/End: Original strand, 52610 - 52791
Alignment:
Q  22 tcttgctatattttgaacaaagtgtcaataagaaaaaatttaaacaaaaccacgtatgaactatgnnnnnnnnngaaatccaaacatttcatattttcgt 121  Q
    |||||||| ||||| |||| ||| ||||||||||||  ||||||||||||| |||||||||| ||         |||| ||| ||||||| ||||||| |    
T  52610 tcttgctacattttaaacagagtttcaataagaaaagttttaaacaaaaccccgtatgaactctggaaagaaa-gaaagccagacatttcttattttcat 52708  T
Q  122 atctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagctatatttct 204  Q
    || |||  ||| |||||||| ||||||||||| ||||| ||   ||| || ||||||| ||||||||||||||||||||||||    
T  52709 atttttggatgatattgttatattttaaacaacaaagataacctaggaaaatttgattcaaaatcagacaaagctatatttct 52791  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 45495619 - 45495483
Alignment:
Q  22 tcttgctatattttgaacaaagtgtcaataagaaaaaatttaaacaaaaccacgtatgaactatgnnnnnnnnngaaatccaaacatttcatattttcgt 121  Q
    ||||||||||| ||||||| ||| ||||| ||||||  ||||||||||||| |||||||||| ||         |||| ||||||||||||||||||| |    
T  45495619 tcttgctatatcttgaacagagtttcaattagaaaagttttaaacaaaaccccgtatgaactctg-gaaaggaagaaaaccaaacatttcatattttcat 45495521  T
Q  122 atctttcaatgttattgttacattttaaacaataaaga 159  Q
    || |||   |||||||| ||||| ||||||||||||||    
T  45495520 atatttggctgttattgctacatcttaaacaataaaga 45495483  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 194
Target Start/End: Original strand, 20748095 - 20748185
Alignment:
Q  104 aacatttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaag 194  Q
    ||||| |||||||||| ||| |||  |||||||||||| |||||||| |||||||| |||  ||  |||||||||| ||||||||| ||||    
T  20748095 aacatctcatattttcatatttttggatgttattgttatattttaaataataaagaaaatctagaaaagtttgattcaaaatcagataaag 20748185  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 19754300 - 19754361
Alignment:
Q  22 tcttgctatattttgaacaaagtgtcaataagaaaaaatttaaacaaaaccacgtatgaact 83  Q
    |||||||||||||| || | ||| ||||||||||||  ||||||||||||| ||||||||||    
T  19754300 tcttgctatattttaaatagagtctcaataagaaaagttttaaacaaaaccccgtatgaact 19754361  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 194
Target Start/End: Original strand, 18236395 - 18236493
Alignment:
Q  96 gaaatccaaacatttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaag 194  Q
    |||| ||||||||||| |||||||  ||||||   |||| ||| |||||||||||  ||||||| || | ||| || ||||||| ||||||||||||||    
T  18236395 gaaaaccaaacatttcttattttcacatctttggctgtttttgctacattttaaatgataaagaaaacttaggaaaatttgattcaaaatcagacaaag 18236493  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 194
Target Start/End: Original strand, 18245846 - 18245944
Alignment:
Q  96 gaaatccaaacatttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaag 194  Q
    |||| ||||||||||| |||||||  ||||||   |||| ||| |||||||||||  ||||||| || | ||| || ||||||| ||||||||||||||    
T  18245846 gaaaaccaaacatttcttattttcacatctttggctgtttttgctacattttaaatgataaagaaaacttaggaaaatttgattcaaaatcagacaaag 18245944  T

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Target: scaffold0500 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 204
Target Start/End: Original strand, 9611 - 9719
Alignment:
Q  96 gaaatccaaacatttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagc 195  Q
    |||| ||||||||||| ||||||| ||| |||  |||  ||||||| ||||||||||| ||||| ||   ||| || ||||||| ||| |||||||||||    
T  9611 gaaagccaaacatttcttattttcatatttttggatgcaattgttatattttaaacaacaaagataacctaggaaaatttgattcaaagtcagacaaagc 9710  T
Q  196 tatatttct 204  Q
    |||||||||    
T  9711 tatatttct 9719  T

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Target: scaffold0021 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 159
Target Start/End: Original strand, 166869 - 167008
Alignment:
Q  19 acttcttgctatattttgaacaaagtgtcaataagaaaaaatttaaacaaaaccacgtatgaactatgnnnnnnnnngaaatccaaacatttcatatttt 118  Q
    |||||||||||||| || |||| ||| ||||||||||||  ||||||||||||| | |||||||| ||         |||| ||||||||||||||||||    
T  166869 acttcttgctatatcttaaacagagtttcaataagaaaagttttaaacaaaaccccatatgaactctg-gaaagggagaaagccaaacatttcatatttt 166967  T
Q  119 cgtatctttcaatgttattgttacattttaaacaataaaga 159  Q
    |  ||||||  ||||||||| || ||| ||||||| |||||    
T  166968 cacatctttggatgttattgctatattctaaacaacaaaga 167008  T

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Target: scaffold0028 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 204
Target Start/End: Original strand, 85448 - 85556
Alignment:
Q  96 gaaatccaaacatttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaagc 195  Q
    |||| ||||||||||| || |||| ||| |||  ||| |||||||| ||||||||||| ||||| ||   ||  || ||||||| ||| |||||||||||    
T  85448 gaaagccaaacatttcttaatttcatatttttggatgctattgttatattttaaacaacaaagagaacctagaaaaatttgattcaaagtcagacaaagc 85547  T
Q  196 tatatttct 204  Q
    |||||||||    
T  85548 tatatttct 85556  T

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Target: scaffold0028; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 194
Target Start/End: Complemental strand, 100602 - 100512
Alignment:
Q  104 aacatttcatattttcgtatctttcaatgttattgttacattttaaacaataaagacaattcaggcaagtttgattaaaaatcagacaaag 194  Q
    ||||| |||||||||| ||| |||  |||||||||||| ||||||||  ||||||| |||  ||| || ||||||| ||||||||| ||||    
T  100602 aacatctcatattttcatatttttggatgttattgttatattttaaatgataaagaaaatctaggaaaatttgattcaaaatcagataaag 100512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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